Wall clock time and date at job start Sat Apr 11 2020 04:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35999 * 116.99936 * 2 1 4 4 C 1.38566 * 120.06963 * 0.02562 * 3 2 1 5 5 C 1.38247 * 119.99432 * 179.97438 * 4 3 2 6 6 C 1.38248 * 120.14769 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.92253 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47180 * 90.00694 * 7 6 5 9 9 C 1.46896 * 111.00551 * 66.03913 * 8 7 6 10 10 C 1.46908 * 111.00232 * 189.99887 * 8 7 6 11 11 H 1.08998 * 109.46979 * 192.36948 * 10 8 7 12 12 C 1.52997 * 109.46669 * 312.37502 * 10 8 7 13 13 C 1.50703 * 109.47146 * 72.37157 * 10 8 7 14 14 O 1.21279 * 119.99997 * 344.03409 * 13 10 8 15 15 N 1.34776 * 119.99999 * 163.75867 * 13 10 8 16 16 C 1.46500 * 119.99603 * 0.02562 * 15 13 10 17 17 C 1.46493 * 120.00052 * 179.97438 * 15 13 10 18 18 C 1.50703 * 109.46838 * 89.99966 * 17 15 13 19 19 H 1.08003 * 120.00201 * 0.02562 * 18 17 15 20 20 C 1.37881 * 119.99969 * 179.97438 * 18 17 15 21 21 N 1.31511 * 120.00258 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99780 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46991 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47181 * 120.00117 * 22 20 18 25 25 H 1.48503 * 109.46484 * 240.00047 * 22 20 18 26 26 C 1.38238 * 120.14914 * 0.23808 * 6 5 4 27 27 C 1.38569 * 119.99619 * 359.49270 * 26 6 5 28 28 O 1.35997 * 120.07168 * 180.25309 * 27 26 6 29 29 H 1.08997 * 109.47415 * 59.99706 * 1 2 3 30 30 H 1.08996 * 109.46787 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46735 * 299.99146 * 1 2 3 32 32 H 1.08003 * 120.00331 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.92181 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47650 * 330.00283 * 7 6 5 35 35 H 1.09002 * 109.46874 * 210.00171 * 7 6 5 36 36 H 1.09003 * 109.47647 * 177.73123 * 9 8 7 37 37 H 1.09002 * 109.47400 * 297.73765 * 9 8 7 38 38 H 1.09008 * 109.46812 * 57.73297 * 9 8 7 39 39 H 1.09000 * 109.46871 * 299.99411 * 12 10 8 40 40 H 1.08998 * 109.47873 * 59.99993 * 12 10 8 41 41 H 1.08998 * 109.46733 * 180.02562 * 12 10 8 42 42 H 1.09001 * 109.47245 * 89.99948 * 16 15 13 43 43 H 1.09008 * 109.46660 * 209.99792 * 16 15 13 44 44 H 1.09003 * 109.47357 * 329.99420 * 16 15 13 45 45 H 1.08998 * 109.47209 * 209.99737 * 17 15 13 46 46 H 1.09000 * 109.47281 * 330.00763 * 17 15 13 47 47 H 0.96998 * 120.00118 * 180.02562 * 21 20 18 48 48 H 1.07996 * 120.00221 * 179.73990 * 26 6 5 49 49 H 0.96699 * 113.99698 * 270.26996 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6058 0.0011 6 6 3.3029 3.6799 0.0005 7 6 3.9835 5.0244 0.0005 8 7 4.2054 5.4609 1.3855 9 6 5.1659 4.5829 2.0669 10 6 4.6474 6.8612 1.4318 11 1 5.0128 7.0939 2.4320 12 6 5.7708 7.0751 0.4155 13 6 3.4887 7.7650 1.0974 14 8 2.4964 7.3089 0.5701 15 7 3.5530 9.0791 1.3895 16 6 4.7495 9.6290 2.0315 17 6 2.4270 9.9578 1.0640 18 6 1.4721 10.0032 2.2290 19 1 1.6832 9.4347 3.1227 20 6 0.3295 10.7713 2.1544 21 7 0.0727 11.4640 1.0664 22 14 -0.8537 10.8280 3.5989 23 1 -0.3397 9.9665 4.6938 24 1 -0.9757 12.2261 4.0841 25 1 -2.1864 10.3360 3.1665 26 6 4.0603 2.5235 -0.0055 27 6 3.4359 1.2864 -0.0004 28 8 4.1796 0.1477 -0.0011 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 0.2146 2.3196 0.0005 33 1 1.3341 4.5115 0.0019 34 1 3.3535 5.7507 -0.5128 35 1 4.9415 4.9467 -0.5137 36 1 5.3424 4.9520 3.0772 37 1 4.7629 3.5713 2.1148 38 1 6.1054 4.5738 1.5141 39 1 6.6089 6.4214 0.6574 40 1 5.4054 6.8424 -0.5846 41 1 6.0991 8.1139 0.4502 42 1 5.4568 9.9506 1.2670 43 1 4.4704 10.4820 2.6501 44 1 5.2116 8.8637 2.6552 45 1 2.7974 10.9621 0.8585 46 1 1.9093 9.5744 0.1847 47 1 -0.7310 12.0046 1.0141 48 1 5.1385 2.5841 -0.0101 49 1 4.3945 -0.1810 -0.8848 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080963219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:40 Heat of formation + Delta-G solvation = -68.413244 kcal Electronic energy + Delta-G solvation = -29800.998973 eV Core-core repulsion = 25729.693050 eV Total energy + Delta-G solvation = -4071.305922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.55398 -39.64832 -38.07338 -37.30475 -36.10233 -34.74133 -32.69193 -31.52938 -30.08889 -29.93339 -27.94927 -27.69886 -26.29977 -25.97826 -25.01018 -23.26979 -22.59244 -21.71512 -20.55332 -18.56054 -18.24842 -17.64200 -16.74302 -16.53906 -16.37296 -15.95107 -15.92334 -15.27105 -14.78582 -14.68729 -14.54398 -14.34558 -14.08300 -14.00490 -13.97111 -13.45009 -13.20736 -12.61066 -12.50658 -12.27339 -12.26306 -12.17749 -12.02546 -11.93486 -11.74426 -11.48307 -11.35828 -11.34509 -11.18679 -10.97878 -10.94612 -10.81266 -10.61109 -10.54097 -10.12977 -9.57439 -8.91856 -8.77637 -8.42348 -8.14071 -7.99406 -7.59700 -6.02878 -4.06980 1.20800 1.29751 3.09862 3.30894 3.36650 3.39260 3.44897 3.56353 3.83287 4.08648 4.37117 4.48432 4.73364 4.82835 4.91825 4.97262 5.02043 5.10963 5.17778 5.18343 5.26812 5.31553 5.34067 5.35591 5.43405 5.49828 5.56661 5.59032 5.75531 5.77303 5.84142 5.94253 5.95071 6.04971 6.08043 6.17233 6.25098 6.31126 6.65698 6.69042 6.97863 7.08632 7.16203 7.21800 7.45798 7.57748 7.64237 7.94338 8.25645 8.45575 8.93656 9.15566 9.58284 11.05168 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012156 B = 0.003004 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.895713 B = 9317.661402 C =11028.636110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.098 3.902 4 C -0.196 4.196 5 C -0.055 4.055 6 C -0.089 4.089 7 C 0.091 3.909 8 N -0.513 5.513 9 C 0.021 3.979 10 C 0.061 3.939 11 H 0.100 0.900 12 C -0.180 4.180 13 C 0.515 3.485 14 O -0.527 6.527 15 N -0.603 5.603 16 C 0.082 3.918 17 C 0.247 3.753 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.103 4.103 27 C 0.065 3.935 28 O -0.488 6.488 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.038 0.962 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.024 0.976 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.262 0.738 48 H 0.130 0.870 49 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.736 -17.887 -3.528 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.052 3.948 4 C -0.215 4.215 5 C -0.073 4.073 6 C -0.090 4.090 7 C -0.036 4.036 8 N -0.236 5.236 9 C -0.127 4.127 10 C -0.051 4.051 11 H 0.118 0.882 12 C -0.240 4.240 13 C 0.300 3.700 14 O -0.403 6.403 15 N -0.335 5.335 16 C -0.062 4.062 17 C 0.128 3.872 18 C -0.561 4.561 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.122 4.122 27 C 0.020 3.980 28 O -0.296 6.296 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.127 0.873 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.148 0.852 49 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 9.655 -18.149 -3.016 20.778 hybrid contribution -0.122 0.304 0.049 0.331 sum 9.533 -17.845 -2.967 20.448 Atomic orbital electron populations 1.23070 0.78588 1.03759 1.01560 1.86110 1.21138 1.26496 1.88832 1.19447 0.91706 0.84792 0.98877 1.21219 1.00157 0.91853 1.08243 1.21101 0.94261 0.97455 0.94497 1.19585 0.93602 0.94169 1.01623 1.21245 0.98783 0.93954 0.89572 1.61793 1.45293 1.00431 1.16070 1.22497 0.93395 0.98163 0.98634 1.21747 0.93634 0.89082 1.00602 0.88174 1.22383 0.98282 1.03118 1.00170 1.20029 0.87902 0.82403 0.79659 1.90590 1.32655 1.73959 1.43097 1.48127 1.18250 1.08103 1.59065 1.21687 0.87760 0.99714 0.97018 1.19266 0.82680 0.88046 0.97254 1.21483 1.05995 1.27504 1.01150 0.92403 1.24931 0.97668 0.95399 0.96145 1.69940 1.26742 1.29911 1.26948 0.86458 0.81010 0.77555 0.82506 1.19776 1.21028 1.20907 1.21135 1.00055 0.90528 1.00488 1.17623 0.86061 0.86331 1.08032 1.84903 1.71881 1.39907 1.32957 0.92631 0.88373 0.92513 0.85084 0.84318 0.87321 0.94392 0.91528 0.90916 0.95735 0.91999 0.91627 0.91130 0.93796 0.90801 0.92526 0.95127 0.93881 0.92836 0.85243 0.76438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.79 10.28 -34.24 -0.35 -4.15 16 3 C 0.10 1.27 6.70 -39.12 -0.26 1.01 16 4 C -0.20 -2.52 9.04 -39.46 -0.36 -2.88 16 5 C -0.05 -0.79 9.69 -39.57 -0.38 -1.17 16 6 C -0.09 -1.22 4.87 -104.62 -0.51 -1.73 16 7 C 0.09 1.30 3.61 -4.98 -0.02 1.28 16 8 N -0.51 -7.63 4.46 -237.73 -1.06 -8.69 16 9 C 0.02 0.25 8.85 60.06 0.53 0.78 16 10 C 0.06 0.91 1.93 -68.86 -0.13 0.78 16 11 H 0.10 1.36 6.22 -51.93 -0.32 1.04 16 12 C -0.18 -2.14 8.22 37.16 0.31 -1.83 16 13 C 0.51 10.41 6.81 -10.98 -0.07 10.34 16 14 O -0.53 -12.67 13.90 5.56 0.08 -12.59 16 15 N -0.60 -12.53 2.86 -182.95 -0.52 -13.05 16 16 C 0.08 1.27 9.36 59.85 0.56 1.83 16 17 C 0.25 6.39 5.16 -5.20 -0.03 6.36 16 18 C -0.52 -14.81 9.39 -34.44 -0.32 -15.13 16 19 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 22 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 26 C -0.10 -1.25 7.97 -39.46 -0.31 -1.57 16 27 C 0.06 0.82 6.72 -39.12 -0.26 0.56 16 28 O -0.49 -5.57 13.29 -34.23 -0.45 -6.03 16 29 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 32 H 0.13 1.43 6.30 -52.48 -0.33 1.10 16 33 H 0.14 2.19 8.06 -52.48 -0.42 1.77 16 34 H 0.11 1.85 5.82 -51.93 -0.30 1.55 16 35 H 0.04 0.47 6.78 -51.93 -0.35 0.11 16 36 H 0.07 0.74 7.95 -51.93 -0.41 0.32 16 37 H 0.07 0.89 6.33 -51.93 -0.33 0.56 16 38 H 0.02 0.25 7.12 -51.92 -0.37 -0.12 16 39 H 0.06 0.60 7.09 -51.93 -0.37 0.24 16 40 H 0.06 0.82 6.53 -51.93 -0.34 0.48 16 41 H 0.07 0.79 6.47 -51.93 -0.34 0.45 16 42 H 0.04 0.57 7.45 -51.93 -0.39 0.19 16 43 H 0.07 1.18 8.07 -51.92 -0.42 0.77 16 44 H 0.06 0.72 6.02 -51.93 -0.31 0.41 16 45 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 46 H 0.04 1.25 7.43 -51.93 -0.39 0.87 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.13 1.34 8.04 -52.49 -0.42 0.92 16 49 H 0.38 2.56 9.06 45.56 0.41 2.97 16 LS Contribution 390.91 15.07 5.89 5.89 Total: -1.00 -35.04 390.91 -7.66 -42.70 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.58 Total: 3.34 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -0.37 Total: 1.46 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.85 Total: -47.59 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.73 Total: -22.76 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.04 -7.66 -42.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080963219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.713 kcal (2) G-P(sol) polarization free energy of solvation -35.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds