Wall clock time and date at job start Sat Apr 11 2020 04:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35999 * 116.99936 * 2 1 4 4 C 1.38566 * 120.06963 * 0.02562 * 3 2 1 5 5 C 1.38247 * 119.99432 * 179.97438 * 4 3 2 6 6 C 1.38248 * 120.14769 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.92253 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47180 * 90.00694 * 7 6 5 9 9 C 1.46896 * 111.00551 * 66.03913 * 8 7 6 10 10 C 1.46908 * 111.00232 * 189.99887 * 8 7 6 11 11 H 1.08998 * 109.46979 * 192.36948 * 10 8 7 12 12 C 1.52997 * 109.46669 * 312.37502 * 10 8 7 13 13 C 1.50703 * 109.47146 * 72.37157 * 10 8 7 14 14 O 1.21279 * 119.99997 * 344.03409 * 13 10 8 15 15 N 1.34776 * 119.99999 * 163.75867 * 13 10 8 16 16 C 1.46500 * 119.99603 * 0.02562 * 15 13 10 17 17 C 1.46493 * 120.00052 * 179.97438 * 15 13 10 18 18 C 1.50703 * 109.46838 * 89.99966 * 17 15 13 19 19 H 1.08003 * 120.00201 * 0.02562 * 18 17 15 20 20 C 1.37881 * 119.99969 * 179.97438 * 18 17 15 21 21 N 1.31511 * 120.00258 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99780 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46991 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47181 * 120.00117 * 22 20 18 25 25 H 1.48503 * 109.46484 * 240.00047 * 22 20 18 26 26 C 1.38238 * 120.14914 * 0.23808 * 6 5 4 27 27 C 1.38569 * 119.99619 * 359.49270 * 26 6 5 28 28 O 1.35997 * 120.07168 * 180.25309 * 27 26 6 29 29 H 1.08997 * 109.47415 * 59.99706 * 1 2 3 30 30 H 1.08996 * 109.46787 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46735 * 299.99146 * 1 2 3 32 32 H 1.08003 * 120.00331 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.92181 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47650 * 330.00283 * 7 6 5 35 35 H 1.09002 * 109.46874 * 210.00171 * 7 6 5 36 36 H 1.09003 * 109.47647 * 177.73123 * 9 8 7 37 37 H 1.09002 * 109.47400 * 297.73765 * 9 8 7 38 38 H 1.09008 * 109.46812 * 57.73297 * 9 8 7 39 39 H 1.09000 * 109.46871 * 299.99411 * 12 10 8 40 40 H 1.08998 * 109.47873 * 59.99993 * 12 10 8 41 41 H 1.08998 * 109.46733 * 180.02562 * 12 10 8 42 42 H 1.09001 * 109.47245 * 89.99948 * 16 15 13 43 43 H 1.09008 * 109.46660 * 209.99792 * 16 15 13 44 44 H 1.09003 * 109.47357 * 329.99420 * 16 15 13 45 45 H 1.08998 * 109.47209 * 209.99737 * 17 15 13 46 46 H 1.09000 * 109.47281 * 330.00763 * 17 15 13 47 47 H 0.96998 * 120.00118 * 180.02562 * 21 20 18 48 48 H 1.07996 * 120.00221 * 179.73990 * 26 6 5 49 49 H 0.96699 * 113.99698 * 270.26996 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6058 0.0011 6 6 3.3029 3.6799 0.0005 7 6 3.9835 5.0244 0.0005 8 7 4.2054 5.4609 1.3855 9 6 5.1659 4.5829 2.0669 10 6 4.6474 6.8612 1.4318 11 1 5.0128 7.0939 2.4320 12 6 5.7708 7.0751 0.4155 13 6 3.4887 7.7650 1.0974 14 8 2.4964 7.3089 0.5701 15 7 3.5530 9.0791 1.3895 16 6 4.7495 9.6290 2.0315 17 6 2.4270 9.9578 1.0640 18 6 1.4721 10.0032 2.2290 19 1 1.6832 9.4347 3.1227 20 6 0.3295 10.7713 2.1544 21 7 0.0727 11.4640 1.0664 22 14 -0.8537 10.8280 3.5989 23 1 -0.3397 9.9665 4.6938 24 1 -0.9757 12.2261 4.0841 25 1 -2.1864 10.3360 3.1665 26 6 4.0603 2.5235 -0.0055 27 6 3.4359 1.2864 -0.0004 28 8 4.1796 0.1477 -0.0011 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 0.2146 2.3196 0.0005 33 1 1.3341 4.5115 0.0019 34 1 3.3535 5.7507 -0.5128 35 1 4.9415 4.9467 -0.5137 36 1 5.3424 4.9520 3.0772 37 1 4.7629 3.5713 2.1148 38 1 6.1054 4.5738 1.5141 39 1 6.6089 6.4214 0.6574 40 1 5.4054 6.8424 -0.5846 41 1 6.0991 8.1139 0.4502 42 1 5.4568 9.9506 1.2670 43 1 4.4704 10.4820 2.6501 44 1 5.2116 8.8637 2.6552 45 1 2.7974 10.9621 0.8585 46 1 1.9093 9.5744 0.1847 47 1 -0.7310 12.0046 1.0141 48 1 5.1385 2.5841 -0.0101 49 1 4.3945 -0.1810 -0.8848 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080963219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:39 Heat of formation + Delta-G solvation = -94.485823 kcal Electronic energy + Delta-G solvation = -29802.129564 eV Core-core repulsion = 25729.693050 eV Total energy + Delta-G solvation = -4072.436514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.54896 -40.98403 -39.10845 -38.36274 -37.17290 -36.45086 -34.74981 -32.68640 -31.12785 -30.96058 -29.52695 -28.74899 -27.39800 -27.21463 -26.31255 -24.96093 -23.57154 -22.94111 -21.73329 -19.76956 -19.40472 -18.69352 -18.56510 -17.95234 -17.49863 -17.31860 -16.83454 -16.60723 -16.34046 -15.92172 -15.62900 -15.48785 -15.42477 -15.13045 -14.92981 -14.61590 -14.43515 -14.15738 -13.82151 -13.56784 -13.40128 -13.25779 -13.16825 -13.09260 -12.96698 -12.87187 -12.76636 -12.60047 -12.50961 -12.35833 -12.27736 -12.20098 -11.97510 -11.89239 -11.64365 -11.50940 -10.64153 -10.35462 -9.84319 -9.37298 -9.16682 -9.00265 -8.21481 -6.35695 0.22327 0.29369 1.35341 1.37864 1.49770 1.91946 2.27628 2.31200 2.41642 2.57124 3.07704 3.13646 3.31220 3.71280 3.81136 3.87028 4.04291 4.04846 4.09751 4.34067 4.34323 4.38833 4.39389 4.44338 4.52501 4.58609 4.63417 4.67110 4.69532 4.80388 4.82586 4.86659 4.96524 4.98554 5.05203 5.08334 5.15680 5.21002 5.25433 5.26315 5.58896 5.66565 5.67497 5.87553 6.03882 6.08846 6.20009 6.24965 6.73019 6.87516 6.88285 7.30881 7.59345 8.85302 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012156 B = 0.003004 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.895713 B = 9317.661402 C =11028.636110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.324 6.324 3 C 0.090 3.910 4 C -0.196 4.196 5 C -0.078 4.078 6 C -0.096 4.096 7 C 0.100 3.900 8 N -0.540 5.540 9 C 0.024 3.976 10 C 0.075 3.925 11 H 0.121 0.879 12 C -0.173 4.173 13 C 0.502 3.498 14 O -0.578 6.578 15 N -0.612 5.612 16 C 0.077 3.923 17 C 0.262 3.738 18 C -0.538 4.538 19 H 0.050 0.950 20 C 0.008 3.992 21 N -0.928 5.928 22 Si 0.965 3.035 23 H -0.269 1.269 24 H -0.268 1.268 25 H -0.282 1.282 26 C -0.094 4.094 27 C 0.065 3.935 28 O -0.495 6.495 29 H 0.063 0.937 30 H 0.123 0.877 31 H 0.057 0.943 32 H 0.143 0.857 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.022 0.978 46 H -0.003 1.003 47 H 0.266 0.734 48 H 0.154 0.846 49 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.988 -19.482 -2.183 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.238 6.238 3 C 0.044 3.956 4 C -0.215 4.215 5 C -0.097 4.097 6 C -0.096 4.096 7 C -0.027 4.027 8 N -0.264 5.264 9 C -0.123 4.123 10 C -0.037 4.037 11 H 0.139 0.861 12 C -0.231 4.231 13 C 0.290 3.710 14 O -0.457 6.457 15 N -0.344 5.344 16 C -0.065 4.065 17 C 0.141 3.859 18 C -0.577 4.577 19 H 0.068 0.932 20 C -0.191 4.191 21 N -0.569 5.569 22 Si 0.790 3.210 23 H -0.193 1.193 24 H -0.193 1.193 25 H -0.208 1.208 26 C -0.112 4.112 27 C 0.020 3.980 28 O -0.307 6.307 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.109 0.891 45 H 0.040 0.960 46 H 0.015 0.985 47 H 0.075 0.925 48 H 0.171 0.829 49 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 11.960 -19.753 -1.668 23.152 hybrid contribution -0.841 0.723 -0.421 1.186 sum 11.119 -19.030 -2.088 22.139 Atomic orbital electron populations 1.23342 0.76802 1.05595 1.02006 1.86093 1.23043 1.25974 1.88704 1.19584 0.92197 0.85002 0.98865 1.21283 1.00903 0.91382 1.07944 1.20985 0.94934 0.97053 0.96765 1.19590 0.93263 0.94674 1.02115 1.21054 0.99076 0.93088 0.89477 1.61677 1.47293 1.00853 1.16613 1.22515 0.93585 0.97049 0.99125 1.21651 0.91653 0.87970 1.02391 0.86142 1.22349 0.97761 1.04567 0.98469 1.21180 0.88998 0.82494 0.78345 1.90575 1.35167 1.74876 1.45114 1.48150 1.18481 1.08193 1.59574 1.21977 0.86117 1.00381 0.97995 1.18697 0.84101 0.88236 0.94913 1.21727 1.07047 1.27454 1.01430 0.93200 1.25824 0.99397 0.94930 0.98952 1.70051 1.27466 1.30497 1.28843 0.85407 0.78304 0.78291 0.79042 1.19340 1.19311 1.20807 1.21222 1.00971 0.89538 0.99513 1.17755 0.86142 0.86916 1.07187 1.84839 1.71508 1.39345 1.34965 0.91812 0.85893 0.92457 0.83906 0.87227 0.91145 0.92010 0.90558 0.91523 0.93099 0.88659 0.92811 0.90202 0.90932 0.91757 0.89068 0.95972 0.98464 0.92462 0.82879 0.73929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.32 -7.51 10.28 -79.68 -0.82 -8.33 16 3 C 0.09 2.27 6.70 22.57 0.15 2.42 16 4 C -0.20 -5.18 9.04 22.35 0.20 -4.98 16 5 C -0.08 -2.40 9.69 22.27 0.22 -2.19 16 6 C -0.10 -2.63 4.87 -19.86 -0.10 -2.73 16 7 C 0.10 2.84 3.61 85.56 0.31 3.15 16 8 N -0.54 -15.48 4.46 -906.03 -4.04 -19.52 16 9 C 0.02 0.50 8.85 127.69 1.13 1.63 16 10 C 0.07 2.10 1.93 44.17 0.09 2.19 16 11 H 0.12 2.87 6.22 -2.39 -0.01 2.86 16 12 C -0.17 -3.57 8.22 71.98 0.59 -2.98 16 13 C 0.50 20.77 6.81 87.66 0.60 21.36 16 14 O -0.58 -29.66 13.90 -3.03 -0.04 -29.70 16 15 N -0.61 -25.87 2.86 -851.13 -2.43 -28.30 16 16 C 0.08 2.26 9.36 127.77 1.20 3.46 16 17 C 0.26 14.26 5.16 85.64 0.44 14.70 16 18 C -0.54 -31.51 9.39 25.60 0.24 -31.27 16 19 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 20 C 0.01 0.45 5.46 84.66 0.46 0.91 16 21 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 22 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 26 C -0.09 -2.12 7.97 22.35 0.18 -1.94 16 27 C 0.07 1.55 6.72 22.57 0.15 1.71 16 28 O -0.49 -10.12 13.29 -79.65 -1.06 -11.18 16 29 H 0.06 0.87 7.66 -2.39 -0.02 0.86 16 30 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 32 H 0.14 3.23 6.30 -2.91 -0.02 3.21 16 33 H 0.11 3.92 8.06 -2.91 -0.02 3.90 16 34 H 0.07 2.57 5.82 -2.39 -0.01 2.55 16 35 H 0.06 1.41 6.78 -2.39 -0.02 1.39 16 36 H 0.08 1.42 7.95 -2.39 -0.02 1.40 16 37 H 0.07 1.47 6.33 -2.39 -0.02 1.45 16 38 H 0.05 0.78 7.12 -2.38 -0.02 0.77 16 39 H 0.09 1.38 7.09 -2.39 -0.02 1.36 16 40 H 0.05 1.26 6.53 -2.39 -0.02 1.24 16 41 H 0.08 1.51 6.47 -2.39 -0.02 1.50 16 42 H 0.07 1.71 7.45 -2.39 -0.02 1.69 16 43 H 0.06 2.00 8.07 -2.38 -0.02 1.98 16 44 H 0.09 2.02 6.02 -2.39 -0.01 2.00 16 45 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 46 H 0.00 -0.17 7.43 -2.39 -0.02 -0.19 16 47 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 48 H 0.15 2.67 8.04 -2.91 -0.02 2.65 16 49 H 0.40 4.36 9.06 -74.06 -0.67 3.69 16 Total: -1.00 -80.66 390.91 1.19 -79.47 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.30 Total: 19.39 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 6.97 Total: 6.82 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -6.18 Total: -104.22 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -1.92 Total: -49.21 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -80.66 1.19 -79.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080963219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.017 kcal (2) G-P(sol) polarization free energy of solvation -80.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds