Wall clock time and date at job start Sat Apr 11 2020 04:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35999 * 117.00083 * 2 1 4 4 C 1.38567 * 120.06830 * 0.02562 * 3 2 1 5 5 C 1.38242 * 119.99834 * 179.97438 * 4 3 2 6 6 C 1.38260 * 120.14639 * 0.27394 * 5 4 3 7 7 C 1.50693 * 119.92938 * 179.69832 * 6 5 4 8 8 N 1.46904 * 109.47027 * 90.00102 * 7 6 5 9 9 C 1.46899 * 110.99814 * 66.04416 * 8 7 6 10 10 C 1.46896 * 111.00485 * 190.00309 * 8 7 6 11 11 H 1.09001 * 109.47243 * 54.99222 * 10 8 7 12 12 C 1.53010 * 109.46732 * 295.00079 * 10 8 7 13 13 C 1.50700 * 109.47699 * 175.00047 * 10 8 7 14 14 O 1.21278 * 119.99523 * 11.11124 * 13 10 8 15 15 N 1.34769 * 120.00101 * 191.11459 * 13 10 8 16 16 C 1.46498 * 120.00212 * 5.01501 * 15 13 10 17 17 C 1.46501 * 119.99741 * 185.01714 * 15 13 10 18 18 C 1.50700 * 109.47161 * 90.00440 * 17 15 13 19 19 H 1.07999 * 120.00075 * 359.97438 * 18 17 15 20 20 C 1.37875 * 119.99865 * 180.02562 * 18 17 15 21 21 N 1.31519 * 120.00270 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00047 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46924 * 59.99520 * 22 20 18 24 24 H 1.48493 * 109.47346 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47075 * 299.99847 * 22 20 18 26 26 C 1.38243 * 120.14207 * 359.44515 * 6 5 4 27 27 C 1.38564 * 119.99987 * 0.55551 * 26 6 5 28 28 O 1.35997 * 120.07515 * 179.70125 * 27 26 6 29 29 H 1.08995 * 109.47403 * 300.00206 * 1 2 3 30 30 H 1.08998 * 109.47082 * 60.00071 * 1 2 3 31 31 H 1.09003 * 109.47209 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.00511 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.93281 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.47331 * 209.99812 * 7 6 5 35 35 H 1.09000 * 109.47165 * 330.00250 * 7 6 5 36 36 H 1.08999 * 109.47227 * 60.00531 * 9 8 7 37 37 H 1.09008 * 109.46906 * 180.02562 * 9 8 7 38 38 H 1.08998 * 109.47680 * 300.00389 * 9 8 7 39 39 H 1.08995 * 109.46833 * 67.65707 * 12 10 8 40 40 H 1.09003 * 109.46612 * 187.65718 * 12 10 8 41 41 H 1.08992 * 109.46822 * 307.65904 * 12 10 8 42 42 H 1.09000 * 109.47118 * 93.83460 * 16 15 13 43 43 H 1.09001 * 109.47305 * 213.83484 * 16 15 13 44 44 H 1.08994 * 109.47259 * 333.83705 * 16 15 13 45 45 H 1.09009 * 109.47053 * 209.99799 * 17 15 13 46 46 H 1.09001 * 109.47445 * 329.99639 * 17 15 13 47 47 H 0.97003 * 119.99921 * 180.02562 * 21 20 18 48 48 H 1.07999 * 119.99898 * 180.25327 * 26 6 5 49 49 H 0.96704 * 114.00093 * 270.02376 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9223 3.6058 0.0011 6 6 3.3029 3.6799 -0.0046 7 6 3.9835 5.0244 -0.0109 8 7 4.2103 5.4649 1.3721 9 6 5.1733 4.5887 2.0524 10 6 4.6524 6.8651 1.4129 11 1 3.9307 7.4895 0.8861 12 6 6.0206 6.9878 0.7391 13 6 4.7561 7.3177 2.8466 14 8 4.6869 6.5061 3.7451 15 7 4.9258 8.6242 3.1302 16 6 4.8993 9.6170 2.0533 17 6 5.1367 9.0516 4.5155 18 6 6.6122 9.0527 4.8218 19 1 7.3219 8.7635 4.0608 20 6 7.0561 9.4219 6.0739 21 7 6.1919 9.7736 7.0008 22 14 8.8851 9.4225 6.4538 23 1 9.5810 10.3595 5.5356 24 1 9.0988 9.8559 7.8579 25 1 9.4294 8.0532 6.2695 26 6 4.0602 2.5234 0.0007 27 6 3.4359 1.2864 0.0001 28 8 4.1795 0.1477 -0.0008 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2146 2.3197 0.0005 33 1 1.3341 4.5115 0.0011 34 1 4.9396 4.9452 -0.5283 35 1 3.3516 5.7492 -0.5241 36 1 6.1235 4.6095 1.5188 37 1 5.3224 4.9371 3.0745 38 1 4.7883 3.5691 2.0690 39 1 5.9188 6.7916 -0.3282 40 1 6.4099 7.9949 0.8880 41 1 6.7076 6.2641 1.1776 42 1 3.8908 10.0184 1.9538 43 1 5.5909 10.4262 2.2880 44 1 5.1966 9.1452 1.1168 45 1 4.7369 10.0567 4.6505 46 1 4.6260 8.3640 5.1897 47 1 6.5042 10.0337 7.8815 48 1 5.1385 2.5841 0.0003 49 1 4.3946 -0.1809 -0.8845 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080963225.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:43 Heat of formation + Delta-G solvation = -60.871813 kcal Electronic energy + Delta-G solvation = -29516.409227 eV Core-core repulsion = 25445.430326 eV Total energy + Delta-G solvation = -4070.978901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.67716 -39.72329 -38.21265 -37.37676 -36.11460 -34.81010 -32.72398 -31.68485 -30.25984 -29.71334 -28.01449 -27.64086 -26.49771 -26.02226 -24.91833 -23.30834 -22.74288 -21.76783 -20.55733 -18.63521 -18.32668 -17.73428 -16.74346 -16.66430 -16.50551 -16.08219 -15.85057 -15.11757 -14.96876 -14.75422 -14.62677 -14.38188 -14.24785 -14.20364 -13.92845 -13.74135 -13.02218 -12.71441 -12.55459 -12.43432 -12.33597 -12.08803 -12.04128 -11.97309 -11.58555 -11.47039 -11.35767 -11.26027 -11.17264 -11.08347 -10.97630 -10.78065 -10.66412 -10.53955 -10.11364 -9.63178 -9.01677 -8.67963 -8.42806 -8.29949 -7.97075 -7.60028 -6.03623 -4.08810 1.05340 1.13780 2.97511 3.31288 3.34243 3.36185 3.37172 3.45384 3.81941 4.00402 4.37368 4.45290 4.56026 4.68405 4.73961 4.84410 4.99101 5.00690 5.12558 5.15816 5.19249 5.23866 5.27430 5.30908 5.38831 5.51930 5.59131 5.65750 5.73152 5.74515 5.87003 5.92492 5.95380 6.01241 6.05538 6.18126 6.31211 6.42659 6.48699 6.65851 6.96955 7.02132 7.19798 7.26279 7.49131 7.55546 7.58204 7.93136 8.24160 8.45516 8.91111 9.14722 9.56367 11.04260 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019100 B = 0.002340 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.589309 B =11963.382944 C =12233.459204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.099 3.901 4 C -0.196 4.196 5 C -0.064 4.064 6 C -0.091 4.091 7 C 0.094 3.906 8 N -0.512 5.512 9 C -0.003 4.003 10 C 0.063 3.937 11 H 0.098 0.902 12 C -0.187 4.187 13 C 0.515 3.485 14 O -0.525 6.525 15 N -0.602 5.602 16 C 0.075 3.925 17 C 0.246 3.754 18 C -0.527 4.527 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.096 4.096 27 C 0.071 3.929 28 O -0.486 6.486 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.019 0.981 37 H 0.116 0.884 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.031 0.969 46 H 0.045 0.955 47 H 0.264 0.736 48 H 0.133 0.867 49 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.315 -12.762 -21.442 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.053 3.947 4 C -0.215 4.215 5 C -0.082 4.082 6 C -0.092 4.092 7 C -0.033 4.033 8 N -0.235 5.235 9 C -0.150 4.150 10 C -0.049 4.049 11 H 0.116 0.884 12 C -0.246 4.246 13 C 0.301 3.699 14 O -0.402 6.402 15 N -0.334 5.334 16 C -0.069 4.069 17 C 0.127 3.873 18 C -0.566 4.566 19 H 0.074 0.926 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.115 4.115 27 C 0.026 3.974 28 O -0.295 6.295 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.037 0.963 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.049 0.951 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.151 0.849 49 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -9.774 -13.270 -19.868 25.814 hybrid contribution 1.558 0.256 -0.704 1.729 sum -8.216 -13.014 -20.572 25.692 Atomic orbital electron populations 1.23075 0.78567 1.03912 1.01397 1.86134 1.21153 1.26401 1.88715 1.19452 0.91733 0.84853 0.98627 1.21143 1.00035 0.91877 1.08440 1.20853 0.93891 0.97075 0.96430 1.19525 0.93457 0.94311 1.01909 1.21036 0.98785 0.93087 0.90410 1.61988 1.46946 1.00859 1.13691 1.23022 0.92002 0.97003 1.02962 1.21685 0.96681 0.90896 0.95636 0.88391 1.22496 0.97713 1.04111 1.00285 1.20002 0.77298 0.82779 0.89811 1.90519 1.49957 1.51564 1.48144 1.48093 1.69903 1.05204 1.10210 1.21807 1.01049 0.93511 0.90510 1.19276 0.96718 0.95679 0.75659 1.21383 0.92092 1.45532 0.97572 0.92609 1.24936 0.97975 0.95193 0.95981 1.69926 1.33909 1.45233 1.04198 0.86575 0.85166 0.78480 0.77287 1.20291 1.21163 1.20196 1.21171 1.00427 0.90475 0.99463 1.17666 0.86107 0.86481 1.07171 1.84926 1.71825 1.39729 1.32982 0.92500 0.92729 0.88269 0.85094 0.85238 0.93801 0.90014 0.96280 0.86623 0.91910 0.92053 0.90601 0.91371 0.93702 0.90935 0.91846 0.95078 0.93685 0.92651 0.84910 0.76249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.40 10.28 -34.24 -0.35 -3.76 16 3 C 0.10 1.15 6.70 -39.12 -0.26 0.89 16 4 C -0.20 -2.00 9.04 -39.46 -0.36 -2.36 16 5 C -0.06 -0.68 9.69 -39.57 -0.38 -1.06 16 6 C -0.09 -1.04 4.89 -104.62 -0.51 -1.55 16 7 C 0.09 1.06 4.56 -4.98 -0.02 1.03 16 8 N -0.51 -7.63 4.61 -237.73 -1.10 -8.73 16 9 C 0.00 -0.05 8.22 60.06 0.49 0.45 16 10 C 0.06 0.95 1.91 -68.86 -0.13 0.82 16 11 H 0.10 1.26 7.34 -51.93 -0.38 0.88 16 12 C -0.19 -2.44 8.06 37.16 0.30 -2.14 16 13 C 0.52 10.65 6.80 -10.99 -0.07 10.58 16 14 O -0.52 -13.08 13.05 5.56 0.07 -13.01 16 15 N -0.60 -12.65 2.86 -182.96 -0.52 -13.17 16 16 C 0.08 1.17 9.81 59.85 0.59 1.75 16 17 C 0.25 6.44 5.22 -5.19 -0.03 6.41 16 18 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 19 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 22 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C -0.10 -1.10 7.88 -39.46 -0.31 -1.42 16 27 C 0.07 0.85 6.72 -39.12 -0.26 0.58 16 28 O -0.49 -5.46 13.29 -34.24 -0.45 -5.91 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.04 0.45 7.06 -51.93 -0.37 0.09 16 35 H 0.08 0.78 7.94 -51.93 -0.41 0.36 16 36 H 0.02 0.28 6.34 -51.93 -0.33 -0.05 16 37 H 0.12 2.36 4.99 -51.92 -0.26 2.10 16 38 H 0.06 0.99 6.15 -51.93 -0.32 0.67 16 39 H 0.06 0.63 7.15 -51.93 -0.37 0.25 16 40 H 0.08 1.00 5.97 -51.93 -0.31 0.69 16 41 H 0.07 0.99 6.08 -51.93 -0.32 0.67 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 44 H 0.06 0.79 4.43 -51.93 -0.23 0.56 16 45 H 0.03 0.83 8.07 -51.92 -0.42 0.41 16 46 H 0.05 1.34 7.36 -51.93 -0.38 0.96 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.13 1.41 8.01 -52.49 -0.42 0.99 16 49 H 0.38 2.39 9.06 45.56 0.41 2.81 16 LS Contribution 388.53 15.07 5.86 5.86 Total: -1.00 -35.58 388.53 -7.64 -43.22 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.46 Total: 2.97 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -0.39 Total: 1.63 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.88 Total: -47.82 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.73 Total: -22.68 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.58 -7.64 -43.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080963225.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.652 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds