Wall clock time and date at job start Sat Apr 11 2020 04:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35999 * 117.00083 * 2 1 4 4 C 1.38567 * 120.06830 * 0.02562 * 3 2 1 5 5 C 1.38242 * 119.99834 * 179.97438 * 4 3 2 6 6 C 1.38260 * 120.14639 * 0.27394 * 5 4 3 7 7 C 1.50693 * 119.92938 * 179.69832 * 6 5 4 8 8 N 1.46904 * 109.47027 * 90.00102 * 7 6 5 9 9 C 1.46899 * 110.99814 * 66.04416 * 8 7 6 10 10 C 1.46896 * 111.00485 * 190.00309 * 8 7 6 11 11 H 1.09001 * 109.47243 * 54.99222 * 10 8 7 12 12 C 1.53010 * 109.46732 * 295.00079 * 10 8 7 13 13 C 1.50700 * 109.47699 * 175.00047 * 10 8 7 14 14 O 1.21278 * 119.99523 * 11.11124 * 13 10 8 15 15 N 1.34769 * 120.00101 * 191.11459 * 13 10 8 16 16 C 1.46498 * 120.00212 * 5.01501 * 15 13 10 17 17 C 1.46501 * 119.99741 * 185.01714 * 15 13 10 18 18 C 1.50700 * 109.47161 * 90.00440 * 17 15 13 19 19 H 1.07999 * 120.00075 * 359.97438 * 18 17 15 20 20 C 1.37875 * 119.99865 * 180.02562 * 18 17 15 21 21 N 1.31519 * 120.00270 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00047 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46924 * 59.99520 * 22 20 18 24 24 H 1.48493 * 109.47346 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47075 * 299.99847 * 22 20 18 26 26 C 1.38243 * 120.14207 * 359.44515 * 6 5 4 27 27 C 1.38564 * 119.99987 * 0.55551 * 26 6 5 28 28 O 1.35997 * 120.07515 * 179.70125 * 27 26 6 29 29 H 1.08995 * 109.47403 * 300.00206 * 1 2 3 30 30 H 1.08998 * 109.47082 * 60.00071 * 1 2 3 31 31 H 1.09003 * 109.47209 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.00511 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.93281 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.47331 * 209.99812 * 7 6 5 35 35 H 1.09000 * 109.47165 * 330.00250 * 7 6 5 36 36 H 1.08999 * 109.47227 * 60.00531 * 9 8 7 37 37 H 1.09008 * 109.46906 * 180.02562 * 9 8 7 38 38 H 1.08998 * 109.47680 * 300.00389 * 9 8 7 39 39 H 1.08995 * 109.46833 * 67.65707 * 12 10 8 40 40 H 1.09003 * 109.46612 * 187.65718 * 12 10 8 41 41 H 1.08992 * 109.46822 * 307.65904 * 12 10 8 42 42 H 1.09000 * 109.47118 * 93.83460 * 16 15 13 43 43 H 1.09001 * 109.47305 * 213.83484 * 16 15 13 44 44 H 1.08994 * 109.47259 * 333.83705 * 16 15 13 45 45 H 1.09009 * 109.47053 * 209.99799 * 17 15 13 46 46 H 1.09001 * 109.47445 * 329.99639 * 17 15 13 47 47 H 0.97003 * 119.99921 * 180.02562 * 21 20 18 48 48 H 1.07999 * 119.99898 * 180.25327 * 26 6 5 49 49 H 0.96704 * 114.00093 * 270.02376 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9223 3.6058 0.0011 6 6 3.3029 3.6799 -0.0046 7 6 3.9835 5.0244 -0.0109 8 7 4.2103 5.4649 1.3721 9 6 5.1733 4.5887 2.0524 10 6 4.6524 6.8651 1.4129 11 1 3.9307 7.4895 0.8861 12 6 6.0206 6.9878 0.7391 13 6 4.7561 7.3177 2.8466 14 8 4.6869 6.5061 3.7451 15 7 4.9258 8.6242 3.1302 16 6 4.8993 9.6170 2.0533 17 6 5.1367 9.0516 4.5155 18 6 6.6122 9.0527 4.8218 19 1 7.3219 8.7635 4.0608 20 6 7.0561 9.4219 6.0739 21 7 6.1919 9.7736 7.0008 22 14 8.8851 9.4225 6.4538 23 1 9.5810 10.3595 5.5356 24 1 9.0988 9.8559 7.8579 25 1 9.4294 8.0532 6.2695 26 6 4.0602 2.5234 0.0007 27 6 3.4359 1.2864 0.0001 28 8 4.1795 0.1477 -0.0008 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2146 2.3197 0.0005 33 1 1.3341 4.5115 0.0011 34 1 4.9396 4.9452 -0.5283 35 1 3.3516 5.7492 -0.5241 36 1 6.1235 4.6095 1.5188 37 1 5.3224 4.9371 3.0745 38 1 4.7883 3.5691 2.0690 39 1 5.9188 6.7916 -0.3282 40 1 6.4099 7.9949 0.8880 41 1 6.7076 6.2641 1.1776 42 1 3.8908 10.0184 1.9538 43 1 5.5909 10.4262 2.2880 44 1 5.1966 9.1452 1.1168 45 1 4.7369 10.0567 4.6505 46 1 4.6260 8.3640 5.1897 47 1 6.5042 10.0337 7.8815 48 1 5.1385 2.5841 0.0003 49 1 4.3946 -0.1809 -0.8845 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080963225.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:42 Heat of formation + Delta-G solvation = -87.755539 kcal Electronic energy + Delta-G solvation = -29517.574993 eV Core-core repulsion = 25445.430326 eV Total energy + Delta-G solvation = -4072.144667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.53086 -41.07219 -39.11829 -38.36694 -37.16103 -36.51014 -34.77054 -32.75542 -31.08672 -30.83212 -29.45540 -28.74051 -27.59359 -27.27943 -26.20775 -24.98329 -23.56459 -22.95767 -21.63053 -19.83487 -19.41424 -18.66084 -18.53253 -18.01442 -17.52482 -17.24734 -16.77518 -16.65798 -16.19536 -15.98964 -15.89078 -15.58540 -15.40122 -14.98885 -14.91794 -14.82732 -14.47235 -14.13762 -13.97112 -13.51233 -13.39074 -13.31038 -13.15085 -13.06800 -12.96416 -12.89232 -12.65879 -12.58199 -12.46711 -12.35056 -12.15577 -12.06791 -11.99034 -11.88575 -11.68128 -11.50310 -10.63806 -10.24377 -9.80948 -9.36747 -9.23174 -8.97290 -8.21364 -6.36537 0.25990 0.31582 1.35978 1.40297 1.47458 1.88126 2.24014 2.32328 2.41203 2.64044 3.07788 3.15553 3.30844 3.70633 3.82424 3.84682 4.07342 4.09760 4.17016 4.35575 4.37149 4.38095 4.41089 4.41650 4.50350 4.58439 4.66888 4.71252 4.72265 4.74595 4.79775 4.81524 4.96318 4.99201 5.03804 5.17228 5.24176 5.25292 5.27614 5.31996 5.59483 5.61416 5.72363 5.88136 6.01332 6.07916 6.17352 6.29489 6.71957 6.85606 6.88067 7.30085 7.57027 8.85269 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019100 B = 0.002340 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.589309 B =11963.382944 C =12233.459204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.086 3.914 4 C -0.196 4.196 5 C -0.069 4.069 6 C -0.102 4.102 7 C 0.098 3.902 8 N -0.528 5.528 9 C 0.010 3.990 10 C 0.076 3.924 11 H 0.133 0.867 12 C -0.181 4.181 13 C 0.502 3.498 14 O -0.580 6.580 15 N -0.610 5.610 16 C 0.070 3.930 17 C 0.260 3.740 18 C -0.539 4.539 19 H 0.055 0.945 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.966 3.034 23 H -0.258 1.258 24 H -0.280 1.280 25 H -0.278 1.278 26 C -0.103 4.103 27 C 0.054 3.946 28 O -0.502 6.502 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.021 0.979 46 H -0.005 1.005 47 H 0.267 0.733 48 H 0.136 0.864 49 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.236 -12.351 -24.523 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.040 3.960 4 C -0.215 4.215 5 C -0.088 4.088 6 C -0.103 4.103 7 C -0.029 4.029 8 N -0.251 5.251 9 C -0.138 4.138 10 C -0.035 4.035 11 H 0.151 0.849 12 C -0.240 4.240 13 C 0.290 3.710 14 O -0.460 6.460 15 N -0.341 5.341 16 C -0.072 4.072 17 C 0.139 3.861 18 C -0.578 4.578 19 H 0.073 0.927 20 C -0.193 4.193 21 N -0.569 5.569 22 Si 0.791 3.209 23 H -0.183 1.183 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.122 4.122 27 C 0.008 3.992 28 O -0.314 6.314 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.135 0.865 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.120 0.880 45 H 0.039 0.961 46 H 0.013 0.987 47 H 0.075 0.925 48 H 0.154 0.846 49 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -9.703 -12.843 -23.021 28.090 hybrid contribution 1.427 0.043 0.241 1.448 sum -8.276 -12.801 -22.780 27.409 Atomic orbital electron populations 1.23356 0.76574 1.05523 1.02283 1.86103 1.23313 1.26403 1.88704 1.19654 0.91915 0.85578 0.98833 1.21407 1.01185 0.91346 1.07557 1.21121 0.93884 0.97869 0.95912 1.19644 0.93903 0.94351 1.02382 1.21136 1.00078 0.93498 0.88143 1.61903 1.46488 1.00481 1.16251 1.22712 0.93233 0.97001 1.00849 1.21646 0.99006 0.91453 0.91398 0.84900 1.22478 0.95685 1.03549 1.02291 1.21182 0.75757 0.81904 0.92137 1.90520 1.52061 1.52937 1.50513 1.48114 1.69840 1.06842 1.09346 1.22107 1.02530 0.92445 0.90084 1.18709 0.95322 0.93687 0.78407 1.21662 0.92962 1.45311 0.97877 0.92710 1.25874 1.02938 0.94675 0.95804 1.70056 1.36168 1.46037 1.04639 0.85488 0.79272 0.78566 0.77613 1.18281 1.20493 1.20394 1.21259 1.00690 0.90598 0.99700 1.17900 0.86684 0.86781 1.07786 1.84860 1.71874 1.39779 1.34886 0.92269 0.91081 0.86455 0.82906 0.83594 0.92274 0.87343 0.94963 0.91213 0.92023 0.87934 0.90603 0.93340 0.91356 0.91658 0.87993 0.96073 0.98659 0.92460 0.84644 0.74124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.99 10.28 -79.67 -0.82 -7.81 16 3 C 0.09 1.92 6.70 22.57 0.15 2.07 16 4 C -0.20 -3.67 9.04 22.35 0.20 -3.47 16 5 C -0.07 -1.32 9.69 22.28 0.22 -1.11 16 6 C -0.10 -2.12 4.89 -19.86 -0.10 -2.21 16 7 C 0.10 1.86 4.56 85.55 0.39 2.25 16 8 N -0.53 -14.81 4.61 -906.03 -4.18 -18.99 16 9 C 0.01 0.32 8.22 127.69 1.05 1.37 16 10 C 0.08 2.11 1.91 44.17 0.08 2.20 16 11 H 0.13 2.78 7.34 -2.39 -0.02 2.76 16 12 C -0.18 -4.12 8.06 71.99 0.58 -3.54 16 13 C 0.50 20.89 6.80 87.66 0.60 21.48 16 14 O -0.58 -30.43 13.05 -3.02 -0.04 -30.47 16 15 N -0.61 -25.77 2.86 -851.15 -2.43 -28.20 16 16 C 0.07 2.02 9.81 127.77 1.25 3.28 16 17 C 0.26 14.23 5.22 85.63 0.45 14.68 16 18 C -0.54 -31.16 9.39 25.60 0.24 -30.92 16 19 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 20 C 0.01 0.35 5.46 84.65 0.46 0.81 16 21 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 22 Si 0.97 45.17 29.54 68.60 2.03 47.19 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 C -0.10 -2.27 7.88 22.35 0.18 -2.10 16 27 C 0.05 1.26 6.72 22.57 0.15 1.41 16 28 O -0.50 -11.24 13.29 -79.65 -1.06 -12.30 16 29 H 0.06 0.66 7.66 -2.39 -0.02 0.65 16 30 H 0.07 0.59 7.66 -2.39 -0.02 0.58 16 31 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.15 2.04 6.30 -2.91 -0.02 2.02 16 33 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.06 0.97 7.06 -2.39 -0.02 0.95 16 35 H 0.11 1.51 7.94 -2.39 -0.02 1.49 16 36 H 0.03 0.93 6.34 -2.39 -0.02 0.92 16 37 H 0.07 3.00 4.99 -2.39 -0.01 2.99 16 38 H 0.06 1.98 6.15 -2.39 -0.01 1.96 16 39 H 0.10 1.53 7.15 -2.39 -0.02 1.52 16 40 H 0.08 1.74 5.97 -2.39 -0.01 1.72 16 41 H 0.05 1.31 6.08 -2.39 -0.01 1.30 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.98 8.10 -2.39 -0.02 1.96 16 44 H 0.10 2.13 4.43 -2.39 -0.01 2.12 16 45 H 0.02 1.18 8.07 -2.38 -0.02 1.16 16 46 H 0.00 -0.30 7.36 -2.39 -0.02 -0.32 16 47 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 48 H 0.14 2.77 8.01 -2.91 -0.02 2.75 16 49 H 0.40 4.91 9.06 -74.05 -0.67 4.24 16 Total: -1.00 -82.54 388.53 1.11 -81.43 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.31 Total: 18.35 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 7.02 Total: 7.50 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -6.32 Total: -103.89 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -1.92 Total: -50.58 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -82.54 1.11 -81.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080963225.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.330 kcal (2) G-P(sol) polarization free energy of solvation -82.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds