Wall clock time and date at job start Sat Apr 11 2020 04:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47208 * 2 1 4 4 C 1.46900 * 110.99636 * 73.18758 * 3 2 1 5 5 C 1.50698 * 109.47457 * 284.33633 * 4 3 2 6 6 H 1.07997 * 119.99988 * 0.22387 * 5 4 3 7 7 C 1.37877 * 120.00434 * 180.22662 * 5 4 3 8 8 N 1.31509 * 120.00553 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99806 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46971 * 89.99926 * 9 7 5 11 11 H 1.48497 * 109.47542 * 210.00250 * 9 7 5 12 12 H 1.48503 * 109.47201 * 330.00142 * 9 7 5 13 13 C 1.46901 * 111.00196 * 197.13820 * 3 2 1 14 14 H 1.08997 * 109.46939 * 186.04729 * 13 3 2 15 15 C 1.52992 * 109.47237 * 306.05200 * 13 3 2 16 16 C 1.50702 * 109.46603 * 66.05241 * 13 3 2 17 17 O 1.21296 * 120.00192 * 359.97438 * 16 13 3 18 18 N 1.34776 * 119.99816 * 180.02562 * 16 13 3 19 19 C 1.40098 * 120.00004 * 185.10006 * 18 16 13 20 20 C 1.38846 * 119.99543 * 320.85687 * 19 18 16 21 21 C 1.38186 * 120.07326 * 179.72586 * 20 19 18 22 22 C 1.38552 * 120.07010 * 0.55543 * 21 20 19 23 23 O 1.36063 * 120.00836 * 179.70485 * 22 21 20 24 24 C 1.42902 * 116.99645 * 0.02562 * 23 22 21 25 25 C 1.39163 * 119.99255 * 359.72023 * 22 21 20 26 26 O 1.35991 * 120.03711 * 180.02562 * 25 22 21 27 27 C 1.42898 * 116.99533 * 179.97438 * 26 25 22 28 28 C 1.38505 * 119.92305 * 0.02562 * 25 22 21 29 29 H 1.09001 * 109.47204 * 288.99116 * 1 2 3 30 30 H 1.08997 * 109.47152 * 48.99028 * 1 2 3 31 31 H 1.08995 * 109.47318 * 168.99374 * 1 2 3 32 32 H 1.09003 * 109.46848 * 240.00265 * 2 1 3 33 33 H 1.08996 * 109.46923 * 120.00675 * 2 1 3 34 34 H 1.08999 * 109.47149 * 44.33406 * 4 3 2 35 35 H 1.09002 * 109.47233 * 164.33158 * 4 3 2 36 36 H 0.96998 * 120.00520 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.47426 * 179.97438 * 15 13 3 38 38 H 1.09000 * 109.47309 * 299.99511 * 15 13 3 39 39 H 1.09007 * 109.47142 * 59.99521 * 15 13 3 40 40 H 0.97000 * 119.99872 * 5.09182 * 18 16 13 41 41 H 1.08003 * 119.96458 * 359.97438 * 20 19 18 42 42 H 1.08003 * 119.96393 * 180.25694 * 21 20 19 43 43 H 1.08995 * 109.47237 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.47306 * 300.00433 * 24 23 22 45 45 H 1.08998 * 109.47288 * 60.00016 * 24 23 22 46 46 H 1.09005 * 109.47349 * 299.99722 * 27 26 25 47 47 H 1.09001 * 109.47331 * 59.99996 * 27 26 25 48 48 H 1.09001 * 109.46622 * 179.97438 * 27 26 25 49 49 H 1.07991 * 120.02981 * 180.02562 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8212 2.0134 1.3128 5 6 0.3671 2.3701 1.4844 6 1 -0.3396 2.1485 0.6984 7 6 -0.0611 2.9794 2.6447 8 7 -1.3300 3.2912 2.7942 9 14 1.1611 3.3622 4.0045 10 1 1.7263 4.7193 3.7945 11 1 0.4716 3.3111 5.3187 12 1 2.2572 2.3605 3.9814 13 6 3.4308 1.4445 -0.4041 14 1 3.7978 2.4647 -0.2927 15 6 4.2546 0.5065 0.4803 16 6 3.5591 1.0189 -1.8441 17 8 2.5723 0.6972 -2.4718 18 7 4.7706 0.9948 -2.4342 19 6 4.8788 0.7030 -3.8002 20 6 4.0705 -0.2730 -4.3676 21 6 4.1719 -0.5582 -5.7159 22 6 5.0883 0.1212 -6.5022 23 8 5.1912 -0.1647 -7.8284 24 6 4.3229 -1.1763 -8.3432 25 6 5.9038 1.0960 -5.9353 26 8 6.8032 1.7638 -6.7063 27 6 7.6068 2.7514 -6.0576 28 6 5.7983 1.3853 -4.5849 29 1 -0.3634 0.3344 0.9717 30 1 -0.3633 0.6743 -0.7754 31 1 -0.3634 -1.0087 -0.1962 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.1196 1.3181 2.0974 35 1 2.4272 2.9171 1.3785 36 1 -1.6312 3.7202 3.6104 37 1 5.3015 0.5503 0.1802 38 1 4.1617 0.8143 1.5218 39 1 3.8873 -0.5138 0.3689 40 1 5.5676 1.1796 -1.9131 41 1 3.3590 -0.8072 -3.7553 42 1 3.5394 -1.3148 -6.1563 43 1 4.5078 -1.3056 -9.4095 44 1 4.5130 -2.1163 -7.8252 45 1 3.2860 -0.8788 -8.1873 46 1 6.9629 3.5187 -5.6276 47 1 8.1910 2.2820 -5.2661 48 1 8.2798 3.2067 -6.7842 49 1 6.4300 2.1417 -4.1432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040222.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:47 Heat of formation + Delta-G solvation = -55.651602 kcal Electronic energy + Delta-G solvation = -29630.792694 eV Core-core repulsion = 25560.040158 eV Total energy + Delta-G solvation = -4070.752536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.99387 -40.00824 -38.61838 -37.68563 -36.42367 -34.30226 -32.71701 -31.46964 -30.52105 -29.62434 -29.07983 -27.47023 -27.10901 -26.77823 -24.41888 -22.69520 -22.24031 -22.12780 -20.55657 -19.31748 -18.80174 -17.85407 -17.38275 -16.74487 -16.42320 -16.20143 -16.10633 -15.44464 -15.16492 -14.78044 -14.71548 -14.68301 -14.45906 -14.15192 -13.85171 -13.37800 -13.32894 -12.91251 -12.87802 -12.58364 -12.44625 -12.23537 -12.02840 -11.70632 -11.69870 -11.51437 -11.43321 -11.40312 -11.25749 -11.02759 -10.90273 -10.61592 -10.40323 -10.13934 -9.95922 -9.70303 -9.30421 -9.01416 -8.75205 -8.51653 -7.67871 -7.40231 -6.02296 -3.98010 1.05944 1.27087 2.73858 2.91729 3.06841 3.15323 3.26212 3.33545 3.34644 3.59386 4.41564 4.56057 4.63862 4.73264 4.80577 4.81141 4.91126 4.96645 5.03678 5.10246 5.15206 5.19903 5.23603 5.25473 5.28226 5.29373 5.34831 5.62026 5.63348 5.83084 5.97063 6.10180 6.16579 6.18277 6.22479 6.27793 6.45015 6.62360 6.70929 6.74342 6.82952 6.87120 7.12020 7.32897 7.38759 7.47273 7.63395 7.88513 8.01481 8.30267 8.67492 9.11053 9.58245 11.09910 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019374 B = 0.002510 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.913370 B =11153.672113 C =11904.736298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.067 3.933 3 N -0.504 5.504 4 C 0.163 3.837 5 C -0.506 4.506 6 H 0.095 0.905 7 C 0.067 3.933 8 N -0.899 5.899 9 Si 0.870 3.130 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.064 3.936 14 H 0.105 0.895 15 C -0.183 4.183 16 C 0.520 3.480 17 O -0.491 6.491 18 N -0.681 5.681 19 C 0.158 3.842 20 C -0.111 4.111 21 C -0.153 4.153 22 C 0.081 3.919 23 O -0.309 6.309 24 C 0.026 3.974 25 C 0.115 3.885 26 O -0.306 6.306 27 C 0.026 3.974 28 C -0.199 4.199 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.019 0.981 34 H -0.006 1.006 35 H 0.020 0.980 36 H 0.263 0.737 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.407 0.593 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.099 0.901 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.275 -7.461 -16.247 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.060 4.060 3 N -0.228 5.228 4 C 0.038 3.962 5 C -0.544 4.544 6 H 0.113 0.887 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.697 3.303 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.194 1.194 13 C -0.049 4.049 14 H 0.123 0.877 15 C -0.243 4.243 16 C 0.307 3.693 17 O -0.362 6.362 18 N -0.329 5.329 19 C 0.063 3.937 20 C -0.132 4.132 21 C -0.172 4.172 22 C 0.035 3.965 23 O -0.223 6.223 24 C -0.069 4.069 25 C 0.069 3.931 26 O -0.219 6.219 27 C -0.069 4.069 28 C -0.220 4.220 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.011 0.989 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.243 0.757 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.116 0.884 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.117 0.883 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 18.238 -7.250 -17.194 26.093 hybrid contribution 1.382 0.049 2.021 2.449 sum 19.620 -7.200 -15.173 25.827 Atomic orbital electron populations 1.21967 0.94373 0.98761 1.04906 1.21966 0.97369 0.88314 0.98367 1.61969 1.11093 1.17891 1.31845 1.20277 0.98906 0.93206 0.83852 1.21265 0.91933 1.37960 1.03282 0.88694 1.24901 0.94929 0.95582 0.97987 1.69878 1.14350 1.42426 1.27206 0.86958 0.81973 0.79093 0.82266 1.20298 1.21285 1.19411 1.21695 0.92860 1.00546 0.89801 0.87675 1.22479 0.99371 1.00841 1.01568 1.21041 0.81961 0.76659 0.89633 1.90700 1.36577 1.44247 1.64689 1.43667 1.10035 1.71694 1.07548 1.17334 0.97499 0.94867 0.83981 1.20977 1.00503 0.96975 0.94721 1.20968 0.99800 1.02207 0.94245 1.18195 0.97350 0.96978 0.83971 1.86154 1.59613 1.56111 1.20428 1.23050 0.93884 0.90095 0.99854 1.17874 0.92325 0.93925 0.89015 1.86174 1.48564 1.50884 1.36310 1.23068 0.94267 0.90412 0.99198 1.20767 1.05223 1.04084 0.91920 0.89420 0.92305 0.95194 0.91986 0.96303 0.98854 0.96199 0.92720 0.92497 0.90886 0.91745 0.75689 0.84105 0.84456 0.88366 0.92785 0.92622 0.92589 0.92753 0.88257 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16 2 C 0.07 1.33 4.05 -3.83 -0.02 1.31 16 3 N -0.50 -10.40 4.16 -229.48 -0.95 -11.35 16 4 C 0.16 3.79 3.16 -4.98 -0.02 3.77 16 5 C -0.51 -13.93 7.73 -34.44 -0.27 -14.20 16 6 H 0.10 2.85 5.84 -52.49 -0.31 2.54 16 7 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 9 Si 0.87 20.86 27.46 -169.99 -4.67 16.19 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.14 6.55 56.52 0.37 -5.77 16 13 C 0.06 1.01 2.72 -68.87 -0.19 0.82 16 14 H 0.11 1.55 7.83 -51.93 -0.41 1.14 16 15 C -0.18 -2.36 8.42 37.15 0.31 -2.05 16 16 C 0.52 8.01 6.53 -10.98 -0.07 7.94 16 17 O -0.49 -9.34 12.18 5.54 0.07 -9.27 16 18 N -0.68 -7.96 5.26 -9.84 -0.05 -8.01 16 19 C 0.16 1.97 6.23 -83.64 -0.52 1.45 16 20 C -0.11 -1.47 8.67 -39.38 -0.34 -1.81 16 21 C -0.15 -1.79 9.03 -39.48 -0.36 -2.15 16 22 C 0.08 1.01 6.70 -39.12 -0.26 0.74 16 23 O -0.31 -3.67 10.28 -34.54 -0.36 -4.02 16 24 C 0.03 0.20 9.81 101.05 0.99 1.19 16 25 C 0.11 1.40 6.70 -39.14 -0.26 1.14 16 26 O -0.31 -3.53 10.28 -34.32 -0.35 -3.88 16 27 C 0.03 0.18 9.81 101.05 0.99 1.17 16 28 C -0.20 -2.19 8.95 -39.27 -0.35 -2.54 16 29 H 0.09 2.10 5.81 -51.93 -0.30 1.80 16 30 H 0.06 1.34 7.79 -51.93 -0.40 0.93 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.17 5.82 -51.93 -0.30 0.87 16 33 H 0.02 0.36 6.95 -51.93 -0.36 0.00 16 34 H -0.01 -0.14 6.28 -51.93 -0.33 -0.47 16 35 H 0.02 0.45 7.15 -51.93 -0.37 0.08 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.06 0.53 7.46 -51.93 -0.39 0.14 16 38 H 0.07 1.02 7.16 -51.93 -0.37 0.65 16 39 H 0.06 0.86 6.72 -51.93 -0.35 0.51 16 40 H 0.41 3.37 8.11 -40.82 -0.33 3.04 16 41 H 0.14 2.03 6.52 -52.48 -0.34 1.68 16 42 H 0.14 1.29 6.29 -52.48 -0.33 0.96 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 45 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 46 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 47 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 48 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.14 1.15 6.29 -52.49 -0.33 0.82 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -34.37 382.22 -7.16 -41.53 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.25 Total: 3.53 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -0.14 Total: -4.11 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.23 Total: -45.73 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.64 Total: -17.18 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.37 -7.16 -41.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040222.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.119 kcal (2) G-P(sol) polarization free energy of solvation -34.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds