Wall clock time and date at job start Sat Apr 11 2020 04:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47208 * 2 1 4 4 C 1.46900 * 110.99636 * 73.18758 * 3 2 1 5 5 C 1.50698 * 109.47457 * 284.33633 * 4 3 2 6 6 H 1.07997 * 119.99988 * 0.22387 * 5 4 3 7 7 C 1.37877 * 120.00434 * 180.22662 * 5 4 3 8 8 N 1.31509 * 120.00553 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99806 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46971 * 89.99926 * 9 7 5 11 11 H 1.48497 * 109.47542 * 210.00250 * 9 7 5 12 12 H 1.48503 * 109.47201 * 330.00142 * 9 7 5 13 13 C 1.46901 * 111.00196 * 197.13820 * 3 2 1 14 14 H 1.08997 * 109.46939 * 186.04729 * 13 3 2 15 15 C 1.52992 * 109.47237 * 306.05200 * 13 3 2 16 16 C 1.50702 * 109.46603 * 66.05241 * 13 3 2 17 17 O 1.21296 * 120.00192 * 359.97438 * 16 13 3 18 18 N 1.34776 * 119.99816 * 180.02562 * 16 13 3 19 19 C 1.40098 * 120.00004 * 185.10006 * 18 16 13 20 20 C 1.38846 * 119.99543 * 320.85687 * 19 18 16 21 21 C 1.38186 * 120.07326 * 179.72586 * 20 19 18 22 22 C 1.38552 * 120.07010 * 0.55543 * 21 20 19 23 23 O 1.36063 * 120.00836 * 179.70485 * 22 21 20 24 24 C 1.42902 * 116.99645 * 0.02562 * 23 22 21 25 25 C 1.39163 * 119.99255 * 359.72023 * 22 21 20 26 26 O 1.35991 * 120.03711 * 180.02562 * 25 22 21 27 27 C 1.42898 * 116.99533 * 179.97438 * 26 25 22 28 28 C 1.38505 * 119.92305 * 0.02562 * 25 22 21 29 29 H 1.09001 * 109.47204 * 288.99116 * 1 2 3 30 30 H 1.08997 * 109.47152 * 48.99028 * 1 2 3 31 31 H 1.08995 * 109.47318 * 168.99374 * 1 2 3 32 32 H 1.09003 * 109.46848 * 240.00265 * 2 1 3 33 33 H 1.08996 * 109.46923 * 120.00675 * 2 1 3 34 34 H 1.08999 * 109.47149 * 44.33406 * 4 3 2 35 35 H 1.09002 * 109.47233 * 164.33158 * 4 3 2 36 36 H 0.96998 * 120.00520 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.47426 * 179.97438 * 15 13 3 38 38 H 1.09000 * 109.47309 * 299.99511 * 15 13 3 39 39 H 1.09007 * 109.47142 * 59.99521 * 15 13 3 40 40 H 0.97000 * 119.99872 * 5.09182 * 18 16 13 41 41 H 1.08003 * 119.96458 * 359.97438 * 20 19 18 42 42 H 1.08003 * 119.96393 * 180.25694 * 21 20 19 43 43 H 1.08995 * 109.47237 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.47306 * 300.00433 * 24 23 22 45 45 H 1.08998 * 109.47288 * 60.00016 * 24 23 22 46 46 H 1.09005 * 109.47349 * 299.99722 * 27 26 25 47 47 H 1.09001 * 109.47331 * 59.99996 * 27 26 25 48 48 H 1.09001 * 109.46622 * 179.97438 * 27 26 25 49 49 H 1.07991 * 120.02981 * 180.02562 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8212 2.0134 1.3128 5 6 0.3671 2.3701 1.4844 6 1 -0.3396 2.1485 0.6984 7 6 -0.0611 2.9794 2.6447 8 7 -1.3300 3.2912 2.7942 9 14 1.1611 3.3622 4.0045 10 1 1.7263 4.7193 3.7945 11 1 0.4716 3.3111 5.3187 12 1 2.2572 2.3605 3.9814 13 6 3.4308 1.4445 -0.4041 14 1 3.7978 2.4647 -0.2927 15 6 4.2546 0.5065 0.4803 16 6 3.5591 1.0189 -1.8441 17 8 2.5723 0.6972 -2.4718 18 7 4.7706 0.9948 -2.4342 19 6 4.8788 0.7030 -3.8002 20 6 4.0705 -0.2730 -4.3676 21 6 4.1719 -0.5582 -5.7159 22 6 5.0883 0.1212 -6.5022 23 8 5.1912 -0.1647 -7.8284 24 6 4.3229 -1.1763 -8.3432 25 6 5.9038 1.0960 -5.9353 26 8 6.8032 1.7638 -6.7063 27 6 7.6068 2.7514 -6.0576 28 6 5.7983 1.3853 -4.5849 29 1 -0.3634 0.3344 0.9717 30 1 -0.3633 0.6743 -0.7754 31 1 -0.3634 -1.0087 -0.1962 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.1196 1.3181 2.0974 35 1 2.4272 2.9171 1.3785 36 1 -1.6312 3.7202 3.6104 37 1 5.3015 0.5503 0.1802 38 1 4.1617 0.8143 1.5218 39 1 3.8873 -0.5138 0.3689 40 1 5.5676 1.1796 -1.9131 41 1 3.3590 -0.8072 -3.7553 42 1 3.5394 -1.3148 -6.1563 43 1 4.5078 -1.3056 -9.4095 44 1 4.5130 -2.1163 -7.8252 45 1 3.2860 -0.8788 -8.1873 46 1 6.9629 3.5187 -5.6276 47 1 8.1910 2.2820 -5.2661 48 1 8.2798 3.2067 -6.7842 49 1 6.4300 2.1417 -4.1432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040222.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:46 Heat of formation + Delta-G solvation = -80.714788 kcal Electronic energy + Delta-G solvation = -29631.879516 eV Core-core repulsion = 25560.040158 eV Total energy + Delta-G solvation = -4071.839357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.96211 -41.07494 -39.40158 -38.93616 -37.61000 -35.36978 -34.68803 -32.93044 -31.37433 -31.05182 -30.31175 -28.48121 -28.05815 -27.84229 -25.62598 -24.05856 -23.69449 -23.07954 -21.87211 -20.69701 -19.68217 -19.11674 -18.62148 -18.10410 -17.49393 -17.11910 -16.99906 -16.39739 -16.25650 -16.12491 -16.00619 -15.71861 -15.65791 -15.39592 -15.32056 -14.80733 -14.52387 -14.18238 -13.82396 -13.66653 -13.51723 -13.33452 -13.30924 -13.08342 -12.98409 -12.71003 -12.61084 -12.36585 -12.34085 -12.33194 -12.10518 -12.05676 -12.03914 -11.90037 -11.57285 -11.09644 -10.77747 -10.64687 -10.58789 -9.63530 -8.96244 -8.59042 -8.17483 -6.18391 0.16664 0.33697 1.38552 1.40249 1.49836 1.59108 1.91292 2.34610 2.38608 2.40892 2.68685 3.13511 3.20412 3.64200 3.80845 4.02539 4.05378 4.11829 4.15367 4.23316 4.34714 4.38996 4.41479 4.43996 4.46142 4.51408 4.53763 4.63727 4.70865 4.75287 4.76105 4.78549 4.83373 4.83590 5.03061 5.10572 5.18145 5.22481 5.27672 5.34232 5.35841 5.61063 5.67204 5.75662 6.05477 6.08724 6.34932 6.48409 6.58749 6.73212 6.89996 7.20343 7.42049 8.98254 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019374 B = 0.002510 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.913370 B =11153.672113 C =11904.736298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.076 3.924 3 N -0.531 5.531 4 C 0.175 3.825 5 C -0.508 4.508 6 H 0.052 0.948 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.942 3.058 10 H -0.267 1.267 11 H -0.290 1.290 12 H -0.244 1.244 13 C 0.061 3.939 14 H 0.120 0.880 15 C -0.176 4.176 16 C 0.523 3.477 17 O -0.535 6.535 18 N -0.659 5.659 19 C 0.143 3.857 20 C -0.128 4.128 21 C -0.154 4.154 22 C 0.069 3.931 23 O -0.328 6.328 24 C 0.018 3.982 25 C 0.104 3.896 26 O -0.325 6.325 27 C 0.015 3.985 28 C -0.188 4.188 29 H 0.053 0.947 30 H 0.030 0.970 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.029 0.971 34 H -0.001 1.001 35 H 0.031 0.969 36 H 0.263 0.737 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.426 0.574 41 H 0.124 0.876 42 H 0.154 0.846 43 H 0.119 0.881 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.118 0.882 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.165 -7.576 -16.158 29.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.052 4.052 3 N -0.255 5.255 4 C 0.049 3.951 5 C -0.547 4.547 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.594 5.594 9 Si 0.766 3.234 10 H -0.192 1.192 11 H -0.216 1.216 12 H -0.167 1.167 13 C -0.051 4.051 14 H 0.138 0.862 15 C -0.235 4.235 16 C 0.311 3.689 17 O -0.410 6.410 18 N -0.308 5.308 19 C 0.048 3.952 20 C -0.149 4.149 21 C -0.173 4.173 22 C 0.023 3.977 23 O -0.242 6.242 24 C -0.077 4.077 25 C 0.057 3.943 26 O -0.239 6.239 27 C -0.079 4.079 28 C -0.209 4.209 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.017 0.983 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.266 0.734 41 H 0.142 0.858 42 H 0.171 0.829 43 H 0.137 0.863 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.136 0.864 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 22.207 -7.374 -17.127 28.997 hybrid contribution 0.166 0.062 1.777 1.785 sum 22.373 -7.312 -15.350 28.100 Atomic orbital electron populations 1.21813 0.96191 0.99298 1.01780 1.21869 0.95712 0.88394 0.99188 1.61722 1.15090 1.18277 1.30437 1.20010 0.95793 0.93864 0.85473 1.21536 0.93926 1.37097 1.02122 0.92958 1.25833 0.96871 0.95604 1.01015 1.70061 1.16951 1.44233 1.28200 0.85794 0.79756 0.79751 0.78104 1.19249 1.21586 1.16711 1.21800 0.90438 1.02389 0.90507 0.86216 1.22415 1.01315 0.99381 1.00362 1.20959 0.82411 0.76169 0.89362 1.90697 1.38299 1.46512 1.65503 1.43333 1.09601 1.70393 1.07464 1.17441 0.98122 0.95330 0.84257 1.20969 1.00809 0.97830 0.95262 1.21103 0.99935 1.02533 0.93769 1.18451 0.97537 0.97238 0.84427 1.86129 1.60679 1.57303 1.20128 1.23329 0.93543 0.89682 1.01120 1.18121 0.92543 0.94034 0.89565 1.86157 1.48766 1.51671 1.37330 1.23383 0.94309 0.89849 1.00334 1.20937 1.04662 1.03928 0.91344 0.92805 0.95086 0.92692 0.90968 0.95285 0.98294 0.95052 0.92806 0.88193 0.91497 0.92299 0.73424 0.85774 0.82852 0.86263 0.91598 0.92301 0.92006 0.91075 0.86389 0.81685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 8.51 71.98 0.61 -5.25 16 2 C 0.08 2.97 4.05 86.30 0.35 3.32 16 3 N -0.53 -21.58 4.16 -879.95 -3.66 -25.24 16 4 C 0.18 7.93 3.16 85.56 0.27 8.20 16 5 C -0.51 -28.71 7.73 25.60 0.20 -28.51 16 6 H 0.05 3.33 5.84 -2.91 -0.02 3.32 16 7 C 0.00 0.17 5.47 84.66 0.46 0.63 16 8 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 9 Si 0.94 42.68 27.46 68.60 1.88 44.56 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.24 -9.95 6.55 99.48 0.65 -9.30 16 13 C 0.06 1.78 2.72 44.17 0.12 1.90 16 14 H 0.12 3.14 7.83 -2.39 -0.02 3.12 16 15 C -0.18 -3.88 8.42 71.98 0.61 -3.28 16 16 C 0.52 15.28 6.53 87.66 0.57 15.85 16 17 O -0.54 -20.36 12.18 -3.08 -0.04 -20.39 16 18 N -0.66 -13.68 5.26 -303.42 -1.59 -15.28 16 19 C 0.14 3.32 6.23 38.10 0.24 3.56 16 20 C -0.13 -3.33 8.67 22.40 0.19 -3.14 16 21 C -0.15 -3.55 9.03 22.33 0.20 -3.34 16 22 C 0.07 1.67 6.70 22.57 0.15 1.82 16 23 O -0.33 -7.51 10.28 -80.30 -0.83 -8.34 16 24 C 0.02 0.24 9.81 113.37 1.11 1.36 16 25 C 0.10 2.38 6.70 22.56 0.15 2.53 16 26 O -0.33 -6.95 10.28 -79.49 -0.82 -7.77 16 27 C 0.02 0.18 9.81 113.37 1.11 1.29 16 28 C -0.19 -3.70 8.95 22.47 0.20 -3.50 16 29 H 0.05 2.71 5.81 -2.39 -0.01 2.69 16 30 H 0.03 1.48 7.79 -2.39 -0.02 1.47 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.07 2.70 5.82 -2.39 -0.01 2.69 16 33 H 0.03 1.07 6.95 -2.39 -0.02 1.06 16 34 H 0.00 -0.02 6.28 -2.39 -0.01 -0.04 16 35 H 0.03 1.35 7.15 -2.39 -0.02 1.34 16 36 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.10 1.34 7.46 -2.39 -0.02 1.32 16 38 H 0.07 1.60 7.16 -2.39 -0.02 1.59 16 39 H 0.06 1.38 6.72 -2.38 -0.02 1.37 16 40 H 0.43 5.34 8.11 -92.71 -0.75 4.58 16 41 H 0.12 3.63 6.52 -2.91 -0.02 3.62 16 42 H 0.15 2.81 6.29 -2.91 -0.02 2.79 16 43 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 45 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 46 H 0.06 0.64 7.66 -2.38 -0.02 0.62 16 47 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 48 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.17 2.17 6.29 -2.92 -0.02 2.15 16 Total: -1.00 -78.64 382.22 1.98 -76.66 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.17 Total: 21.68 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 6.55 Total: -6.56 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -4.95 Total: -99.85 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -1.68 Total: -36.50 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.88 Total: 44.56 kcal Total: -78.64 1.98 -76.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040222.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.054 kcal (2) G-P(sol) polarization free energy of solvation -78.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds