Wall clock time and date at job start Sat Apr 11 2020 04:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.46871 * 2 1 4 4 C 1.46898 * 111.00055 * 302.15304 * 3 2 1 5 5 C 1.50706 * 109.47348 * 298.53966 * 4 3 2 6 6 H 1.07994 * 119.99731 * 2.41130 * 5 4 3 7 7 C 1.37881 * 119.99886 * 182.41702 * 5 4 3 8 8 N 1.31510 * 119.99921 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99686 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47607 * 59.99874 * 9 7 5 11 11 H 1.48499 * 109.47301 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47286 * 299.99702 * 9 7 5 13 13 C 1.46893 * 111.00385 * 66.11169 * 3 2 1 14 14 H 1.08998 * 109.47282 * 296.47130 * 13 3 2 15 15 C 1.52997 * 109.46955 * 176.46858 * 13 3 2 16 16 C 1.50702 * 109.47239 * 56.46807 * 13 3 2 17 17 O 1.21292 * 119.99699 * 28.34752 * 16 13 3 18 18 N 1.34777 * 120.00101 * 208.34727 * 16 13 3 19 19 C 1.40098 * 119.99919 * 185.10867 * 18 16 13 20 20 C 1.38847 * 119.99880 * 32.71597 * 19 18 16 21 21 C 1.38186 * 120.07412 * 180.02562 * 20 19 18 22 22 C 1.38550 * 120.06925 * 359.95195 * 21 20 19 23 23 O 1.36063 * 120.00388 * 180.30098 * 22 21 20 24 24 C 1.42905 * 116.99943 * 359.72525 * 23 22 21 25 25 C 1.39154 * 119.99387 * 0.02562 * 22 21 20 26 26 O 1.35994 * 120.03720 * 179.97438 * 25 22 21 27 27 C 1.42903 * 116.99907 * 180.02562 * 26 25 22 28 28 C 1.38498 * 119.92883 * 0.02562 * 25 22 21 29 29 H 1.09001 * 109.46872 * 64.71007 * 1 2 3 30 30 H 1.08998 * 109.47218 * 184.70380 * 1 2 3 31 31 H 1.08994 * 109.47052 * 304.71357 * 1 2 3 32 32 H 1.08997 * 109.46817 * 239.99562 * 2 1 3 33 33 H 1.09000 * 109.46308 * 119.99553 * 2 1 3 34 34 H 1.09004 * 109.46909 * 58.53636 * 4 3 2 35 35 H 1.09004 * 109.47488 * 178.53499 * 4 3 2 36 36 H 0.97005 * 119.99267 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47314 * 299.99676 * 15 13 3 38 38 H 1.08996 * 109.47656 * 60.00168 * 15 13 3 39 39 H 1.09000 * 109.47009 * 179.97438 * 15 13 3 40 40 H 0.96996 * 119.99835 * 5.10981 * 18 16 13 41 41 H 1.08001 * 119.96235 * 359.97438 * 20 19 18 42 42 H 1.08001 * 119.96224 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.46849 * 59.99660 * 24 23 22 44 44 H 1.08997 * 109.46673 * 179.97438 * 24 23 22 45 45 H 1.08994 * 109.46707 * 300.00143 * 24 23 22 46 46 H 1.09002 * 109.47228 * 179.97438 * 27 26 25 47 47 H 1.08999 * 109.46818 * 299.99998 * 27 26 25 48 48 H 1.09004 * 109.47210 * 59.99562 * 27 26 25 49 49 H 1.07994 * 120.03868 * 179.97438 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5070 2.1246 -1.1611 5 6 1.9947 1.4710 -2.4284 6 1 2.5903 0.5716 -2.3774 7 6 1.6806 2.0214 -3.6529 8 7 0.9550 3.1165 -3.7150 9 14 2.2858 1.2116 -5.2237 10 1 1.7523 -0.1718 -5.3048 11 1 1.8166 1.9931 -6.3960 12 1 3.7703 1.1702 -5.2192 13 6 1.6716 2.0665 1.2539 14 1 0.5873 2.1344 1.3416 15 6 2.2723 3.4736 1.2533 16 6 2.2219 1.2858 2.4195 17 8 3.2189 0.6092 2.2797 18 7 1.6063 1.3393 3.6173 19 6 2.1759 0.7011 4.7268 20 6 3.5567 0.6149 4.8449 21 6 4.1201 -0.0147 5.9384 22 6 3.3085 -0.5605 6.9196 23 8 3.8648 -1.1748 7.9988 24 6 5.2919 -1.2257 8.0520 25 6 1.9244 -0.4754 6.8043 26 8 1.1268 -1.0113 7.7667 27 6 -0.2849 -0.8874 7.5827 28 6 1.3598 0.1548 5.7078 29 1 -0.3633 0.4390 -0.9292 30 1 -0.3633 -1.0242 0.0843 31 1 -0.3633 0.5852 0.8447 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.4171 2.1168 -1.1445 35 1 1.8636 3.1539 -1.1226 36 1 0.7338 3.5034 -4.5765 37 1 3.3567 3.4057 1.1656 38 1 1.8743 4.0383 0.4103 39 1 2.0137 3.9794 2.1835 40 1 0.7689 1.8197 3.7111 41 1 4.1910 1.0398 4.0810 42 1 5.1944 -0.0803 6.0286 43 1 5.6918 -0.2117 8.0537 44 1 5.6034 -1.7403 8.9610 45 1 5.6690 -1.7635 7.1822 46 1 -0.8029 -1.3562 8.4193 47 1 -0.5535 0.1679 7.5337 48 1 -0.5748 -1.3796 6.6543 49 1 0.2858 0.2215 5.6164 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040226.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:50 Heat of formation + Delta-G solvation = -62.871068 kcal Electronic energy + Delta-G solvation = -29655.912561 eV Core-core repulsion = 25584.846965 eV Total energy + Delta-G solvation = -4071.065596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.97961 -39.97352 -38.60063 -37.61919 -36.38391 -34.21901 -32.68274 -31.66829 -30.50322 -29.66360 -28.61356 -27.45769 -27.06876 -26.45186 -24.21038 -22.99993 -22.62050 -22.07546 -20.61596 -19.17197 -18.72376 -17.73948 -17.20900 -16.55621 -16.27036 -16.16900 -16.02512 -15.43157 -15.29936 -15.02576 -14.85965 -14.69411 -14.53118 -13.93164 -13.71433 -13.19038 -13.12203 -12.89622 -12.81691 -12.40796 -12.37990 -12.17971 -11.95151 -11.77198 -11.68859 -11.57010 -11.39077 -11.34811 -11.19923 -11.04794 -10.85162 -10.76179 -10.56784 -10.04168 -9.95761 -9.81576 -9.28281 -9.15038 -8.74769 -8.43587 -7.61568 -7.23193 -6.04931 -4.04836 1.08107 1.28853 2.77395 2.94308 3.08492 3.17962 3.33747 3.37410 3.41527 3.63767 4.41569 4.57271 4.76537 4.79569 4.82504 4.86874 4.92216 4.97726 5.06636 5.11676 5.17612 5.24724 5.29622 5.31561 5.34900 5.44566 5.52544 5.65352 5.78326 5.90577 5.97485 6.09189 6.15111 6.19188 6.23940 6.29605 6.39247 6.57092 6.69845 6.72355 6.84554 6.92360 7.24109 7.33787 7.38774 7.43100 7.77283 8.02892 8.14829 8.32112 8.51536 9.01945 9.58929 11.06107 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021065 B = 0.002398 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.913086 B =11675.632946 C =12082.411623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 N -0.512 5.512 4 C 0.189 3.811 5 C -0.505 4.505 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.068 3.932 14 H 0.051 0.949 15 C -0.139 4.139 16 C 0.521 3.479 17 O -0.495 6.495 18 N -0.680 5.680 19 C 0.163 3.837 20 C -0.118 4.118 21 C -0.150 4.150 22 C 0.077 3.923 23 O -0.310 6.310 24 C 0.027 3.973 25 C 0.117 3.883 26 O -0.306 6.306 27 C 0.026 3.974 28 C -0.204 4.204 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.057 0.943 34 H -0.003 1.003 35 H 0.039 0.961 36 H 0.261 0.739 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.408 0.592 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.054 0.946 44 H 0.098 0.902 45 H 0.055 0.945 46 H 0.099 0.901 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 -3.996 23.829 24.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.072 4.072 3 N -0.237 5.237 4 C 0.065 3.935 5 C -0.543 4.543 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.044 4.044 14 H 0.069 0.931 15 C -0.197 4.197 16 C 0.308 3.692 17 O -0.366 6.366 18 N -0.327 5.327 19 C 0.068 3.932 20 C -0.138 4.138 21 C -0.169 4.169 22 C 0.031 3.969 23 O -0.224 6.224 24 C -0.069 4.069 25 C 0.071 3.929 26 O -0.219 6.219 27 C -0.069 4.069 28 C -0.225 4.225 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.014 0.986 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.244 0.756 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.072 0.928 44 H 0.116 0.884 45 H 0.073 0.927 46 H 0.117 0.883 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.805 -4.521 23.800 24.239 hybrid contribution -1.157 0.032 -1.131 1.618 sum -0.352 -4.489 22.669 23.112 Atomic orbital electron populations 1.22395 0.99433 1.00640 1.02094 1.22075 0.91820 0.91092 1.02223 1.62278 1.59405 1.01847 1.00132 1.19885 0.93449 0.94279 0.85935 1.21101 1.32516 1.10909 0.89822 0.91889 1.24944 0.95317 0.95055 0.99140 1.69937 1.38301 1.20331 1.25338 0.86573 0.79318 0.79248 0.82366 1.20315 1.21407 1.20137 1.21526 0.97756 0.94844 0.90306 0.93109 1.21801 1.02578 0.93306 1.02028 1.21147 0.84116 0.80980 0.82937 1.90687 1.24595 1.38398 1.82964 1.43787 1.27003 1.54095 1.07784 1.17384 0.91956 0.96188 0.87716 1.20950 0.93488 1.01235 0.98139 1.20954 0.99763 1.01796 0.94386 1.18170 0.89382 0.99762 0.89604 1.86151 1.21979 1.73903 1.40319 1.23044 0.78919 1.01779 1.03122 1.17855 0.87701 0.97633 0.89679 1.86173 1.17597 1.74543 1.43630 1.23067 0.79006 1.01769 1.03101 1.20705 1.00077 1.05511 0.96222 0.90852 0.93480 0.94343 0.89734 0.92458 0.98578 0.94342 0.92901 0.91229 0.90062 0.92929 0.75642 0.83955 0.84458 0.92780 0.88398 0.92682 0.88258 0.92709 0.92646 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.37 9.16 37.16 0.34 -3.03 16 2 C 0.06 1.14 5.41 -3.82 -0.02 1.12 16 3 N -0.51 -10.92 4.35 -229.47 -1.00 -11.92 16 4 C 0.19 4.67 4.08 -4.97 -0.02 4.65 16 5 C -0.50 -13.85 8.56 -34.44 -0.29 -14.15 16 6 H 0.06 1.74 6.68 -52.49 -0.35 1.39 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -25.93 13.29 55.43 0.74 -25.19 16 9 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.07 1.16 2.12 -68.87 -0.15 1.02 16 14 H 0.05 0.80 6.54 -51.93 -0.34 0.46 16 15 C -0.14 -2.20 8.94 37.16 0.33 -1.86 16 16 C 0.52 8.41 5.62 -10.98 -0.06 8.35 16 17 O -0.50 -9.65 13.01 5.55 0.07 -9.58 16 18 N -0.68 -8.51 5.35 -9.84 -0.05 -8.56 16 19 C 0.16 2.10 6.29 -83.64 -0.53 1.58 16 20 C -0.12 -1.60 8.66 -39.37 -0.34 -1.94 16 21 C -0.15 -1.79 9.03 -39.49 -0.36 -2.15 16 22 C 0.08 0.97 6.70 -39.13 -0.26 0.71 16 23 O -0.31 -3.71 10.28 -34.54 -0.36 -4.07 16 24 C 0.03 0.20 9.81 101.05 0.99 1.19 16 25 C 0.12 1.46 6.70 -39.15 -0.26 1.20 16 26 O -0.31 -3.59 10.28 -34.32 -0.35 -3.94 16 27 C 0.03 0.19 9.81 101.05 0.99 1.18 16 28 C -0.20 -2.31 8.95 -39.27 -0.35 -2.66 16 29 H 0.07 1.51 6.61 -51.93 -0.34 1.16 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.62 6.42 -51.93 -0.33 0.29 16 32 H 0.08 1.86 6.58 -51.93 -0.34 1.52 16 33 H 0.06 1.14 5.98 -51.93 -0.31 0.83 16 34 H 0.00 -0.09 6.29 -51.93 -0.33 -0.41 16 35 H 0.04 1.00 6.02 -51.93 -0.31 0.69 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.39 6.28 -51.93 -0.33 1.06 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.41 3.82 8.82 -40.82 -0.36 3.46 16 41 H 0.14 2.13 6.35 -52.49 -0.33 1.80 16 42 H 0.14 1.31 6.29 -52.49 -0.33 0.98 16 43 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 48 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 49 H 0.14 1.20 6.29 -52.49 -0.33 0.87 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -33.35 387.53 -7.39 -40.74 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.18 Total: 3.51 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -0.08 Total: -3.33 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.31 Total: -45.68 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.64 Total: -17.59 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.35 -7.39 -40.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040226.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.128 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds