Wall clock time and date at job start Sat Apr 11 2020 04:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.46871 * 2 1 4 4 C 1.46898 * 111.00055 * 302.15304 * 3 2 1 5 5 C 1.50706 * 109.47348 * 298.53966 * 4 3 2 6 6 H 1.07994 * 119.99731 * 2.41130 * 5 4 3 7 7 C 1.37881 * 119.99886 * 182.41702 * 5 4 3 8 8 N 1.31510 * 119.99921 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99686 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47607 * 59.99874 * 9 7 5 11 11 H 1.48499 * 109.47301 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47286 * 299.99702 * 9 7 5 13 13 C 1.46893 * 111.00385 * 66.11169 * 3 2 1 14 14 H 1.08998 * 109.47282 * 296.47130 * 13 3 2 15 15 C 1.52997 * 109.46955 * 176.46858 * 13 3 2 16 16 C 1.50702 * 109.47239 * 56.46807 * 13 3 2 17 17 O 1.21292 * 119.99699 * 28.34752 * 16 13 3 18 18 N 1.34777 * 120.00101 * 208.34727 * 16 13 3 19 19 C 1.40098 * 119.99919 * 185.10867 * 18 16 13 20 20 C 1.38847 * 119.99880 * 32.71597 * 19 18 16 21 21 C 1.38186 * 120.07412 * 180.02562 * 20 19 18 22 22 C 1.38550 * 120.06925 * 359.95195 * 21 20 19 23 23 O 1.36063 * 120.00388 * 180.30098 * 22 21 20 24 24 C 1.42905 * 116.99943 * 359.72525 * 23 22 21 25 25 C 1.39154 * 119.99387 * 0.02562 * 22 21 20 26 26 O 1.35994 * 120.03720 * 179.97438 * 25 22 21 27 27 C 1.42903 * 116.99907 * 180.02562 * 26 25 22 28 28 C 1.38498 * 119.92883 * 0.02562 * 25 22 21 29 29 H 1.09001 * 109.46872 * 64.71007 * 1 2 3 30 30 H 1.08998 * 109.47218 * 184.70380 * 1 2 3 31 31 H 1.08994 * 109.47052 * 304.71357 * 1 2 3 32 32 H 1.08997 * 109.46817 * 239.99562 * 2 1 3 33 33 H 1.09000 * 109.46308 * 119.99553 * 2 1 3 34 34 H 1.09004 * 109.46909 * 58.53636 * 4 3 2 35 35 H 1.09004 * 109.47488 * 178.53499 * 4 3 2 36 36 H 0.97005 * 119.99267 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47314 * 299.99676 * 15 13 3 38 38 H 1.08996 * 109.47656 * 60.00168 * 15 13 3 39 39 H 1.09000 * 109.47009 * 179.97438 * 15 13 3 40 40 H 0.96996 * 119.99835 * 5.10981 * 18 16 13 41 41 H 1.08001 * 119.96235 * 359.97438 * 20 19 18 42 42 H 1.08001 * 119.96224 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.46849 * 59.99660 * 24 23 22 44 44 H 1.08997 * 109.46673 * 179.97438 * 24 23 22 45 45 H 1.08994 * 109.46707 * 300.00143 * 24 23 22 46 46 H 1.09002 * 109.47228 * 179.97438 * 27 26 25 47 47 H 1.08999 * 109.46818 * 299.99998 * 27 26 25 48 48 H 1.09004 * 109.47210 * 59.99562 * 27 26 25 49 49 H 1.07994 * 120.03868 * 179.97438 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5070 2.1246 -1.1611 5 6 1.9947 1.4710 -2.4284 6 1 2.5903 0.5716 -2.3774 7 6 1.6806 2.0214 -3.6529 8 7 0.9550 3.1165 -3.7150 9 14 2.2858 1.2116 -5.2237 10 1 1.7523 -0.1718 -5.3048 11 1 1.8166 1.9931 -6.3960 12 1 3.7703 1.1702 -5.2192 13 6 1.6716 2.0665 1.2539 14 1 0.5873 2.1344 1.3416 15 6 2.2723 3.4736 1.2533 16 6 2.2219 1.2858 2.4195 17 8 3.2189 0.6092 2.2797 18 7 1.6063 1.3393 3.6173 19 6 2.1759 0.7011 4.7268 20 6 3.5567 0.6149 4.8449 21 6 4.1201 -0.0147 5.9384 22 6 3.3085 -0.5605 6.9196 23 8 3.8648 -1.1748 7.9988 24 6 5.2919 -1.2257 8.0520 25 6 1.9244 -0.4754 6.8043 26 8 1.1268 -1.0113 7.7667 27 6 -0.2849 -0.8874 7.5827 28 6 1.3598 0.1548 5.7078 29 1 -0.3633 0.4390 -0.9292 30 1 -0.3633 -1.0242 0.0843 31 1 -0.3633 0.5852 0.8447 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.4171 2.1168 -1.1445 35 1 1.8636 3.1539 -1.1226 36 1 0.7338 3.5034 -4.5765 37 1 3.3567 3.4057 1.1656 38 1 1.8743 4.0383 0.4103 39 1 2.0137 3.9794 2.1835 40 1 0.7689 1.8197 3.7111 41 1 4.1910 1.0398 4.0810 42 1 5.1944 -0.0803 6.0286 43 1 5.6918 -0.2117 8.0537 44 1 5.6034 -1.7403 8.9610 45 1 5.6690 -1.7635 7.1822 46 1 -0.8029 -1.3562 8.4193 47 1 -0.5535 0.1679 7.5337 48 1 -0.5748 -1.3796 6.6543 49 1 0.2858 0.2215 5.6164 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040226.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:49 Heat of formation + Delta-G solvation = -86.097761 kcal Electronic energy + Delta-G solvation = -29656.919746 eV Core-core repulsion = 25584.846965 eV Total energy + Delta-G solvation = -4072.072781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.00111 -41.09391 -39.39943 -38.93717 -37.63105 -35.32643 -34.72577 -33.09621 -31.38363 -30.79384 -30.12678 -28.19537 -28.05743 -27.89717 -25.69967 -24.63643 -23.67943 -23.08477 -21.95185 -20.57235 -19.62904 -18.68447 -18.57328 -18.14918 -17.41007 -17.16987 -16.99554 -16.79048 -16.57480 -16.27960 -16.12244 -15.75261 -15.46194 -15.34975 -15.04716 -14.67191 -14.23837 -14.10722 -13.82189 -13.75494 -13.63707 -13.43307 -13.27015 -13.08765 -12.96077 -12.71685 -12.63269 -12.47798 -12.40028 -12.35765 -12.32147 -12.08172 -12.05728 -11.90300 -11.56169 -11.20184 -10.94070 -10.62577 -10.50399 -9.64777 -8.91221 -8.56543 -8.17682 -6.24203 0.15553 0.32219 1.41358 1.43474 1.50735 1.54684 1.87405 2.33960 2.38560 2.42904 2.69101 3.14770 3.27043 3.61906 3.80174 4.02255 4.06938 4.10844 4.14247 4.22216 4.24921 4.38600 4.42228 4.43620 4.45885 4.46303 4.50033 4.58004 4.66247 4.70308 4.76221 4.78304 4.85612 4.92416 5.04587 5.19160 5.22553 5.25022 5.26861 5.33712 5.40170 5.46731 5.68425 5.72289 6.07123 6.08764 6.33913 6.36818 6.58183 6.67401 6.89531 7.14093 7.43753 8.92831 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021065 B = 0.002398 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.913086 B =11675.632946 C =12082.411623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.060 3.940 3 N -0.530 5.530 4 C 0.208 3.792 5 C -0.521 4.521 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.958 3.042 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.065 3.935 14 H 0.072 0.928 15 C -0.134 4.134 16 C 0.528 3.472 17 O -0.534 6.534 18 N -0.659 5.659 19 C 0.147 3.853 20 C -0.134 4.134 21 C -0.150 4.150 22 C 0.067 3.933 23 O -0.328 6.328 24 C 0.017 3.983 25 C 0.108 3.892 26 O -0.324 6.324 27 C 0.015 3.985 28 C -0.192 4.192 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.063 0.937 34 H -0.017 1.017 35 H 0.021 0.979 36 H 0.264 0.736 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.426 0.574 41 H 0.124 0.876 42 H 0.155 0.845 43 H 0.065 0.935 44 H 0.119 0.881 45 H 0.059 0.941 46 H 0.119 0.881 47 H 0.069 0.931 48 H 0.062 0.938 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.252 -4.546 25.486 25.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.068 4.068 3 N -0.255 5.255 4 C 0.082 3.918 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.568 5.568 9 Si 0.783 3.217 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.199 1.199 13 C -0.047 4.047 14 H 0.090 0.910 15 C -0.192 4.192 16 C 0.316 3.684 17 O -0.408 6.408 18 N -0.307 5.307 19 C 0.052 3.948 20 C -0.155 4.155 21 C -0.169 4.169 22 C 0.022 3.978 23 O -0.242 6.242 24 C -0.077 4.077 25 C 0.061 3.939 26 O -0.238 6.238 27 C -0.079 4.079 28 C -0.213 4.213 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.000 1.000 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.264 0.736 41 H 0.142 0.858 42 H 0.173 0.827 43 H 0.083 0.917 44 H 0.138 0.862 45 H 0.078 0.922 46 H 0.137 0.863 47 H 0.088 0.912 48 H 0.080 0.920 49 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.144 -5.067 25.504 26.003 hybrid contribution -0.860 0.164 -1.468 1.710 sum -1.004 -4.903 24.036 24.552 Atomic orbital electron populations 1.22255 0.97511 1.02223 1.01406 1.21969 0.93356 0.90324 1.01122 1.62083 1.60098 1.02336 1.01009 1.19493 0.92232 0.93419 0.86651 1.21397 1.32371 1.10764 0.91436 0.92878 1.25707 0.95446 0.95588 1.02178 1.70035 1.39251 1.21434 1.26128 0.85609 0.78729 0.78582 0.78732 1.19601 1.20667 1.19941 1.21613 0.99082 0.95128 0.88831 0.91020 1.21761 1.01254 0.92775 1.03396 1.20822 0.83620 0.80406 0.83565 1.90683 1.26289 1.40169 1.83686 1.43448 1.27150 1.53534 1.06559 1.17474 0.91977 0.97219 0.88114 1.20923 0.93951 1.02234 0.98392 1.21086 1.00767 1.01261 0.93772 1.18416 0.89951 0.99638 0.89834 1.86129 1.24224 1.73757 1.40099 1.23333 0.76938 1.02940 1.04480 1.18088 0.88036 0.97644 0.90112 1.86159 1.19596 1.74477 1.43603 1.23385 0.76892 1.03183 1.04424 1.20865 1.01249 1.04152 0.95019 0.93763 0.91232 0.92178 0.92393 0.91886 0.99988 0.96145 0.92744 0.92926 0.91804 0.88906 0.73568 0.85816 0.82726 0.91661 0.86248 0.92214 0.86315 0.91199 0.91967 0.81772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.14 9.16 71.98 0.66 -5.48 16 2 C 0.06 2.46 5.41 86.31 0.47 2.92 16 3 N -0.53 -22.94 4.35 -879.92 -3.83 -26.77 16 4 C 0.21 10.52 4.08 85.56 0.35 10.86 16 5 C -0.52 -29.30 8.56 25.60 0.22 -29.08 16 6 H 0.05 3.03 6.68 -2.91 -0.02 3.01 16 7 C 0.01 0.52 5.46 84.66 0.46 0.98 16 8 N -0.93 -54.22 13.29 21.45 0.28 -53.93 16 9 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 C 0.07 2.18 2.12 44.17 0.09 2.28 16 14 H 0.07 2.11 6.54 -2.39 -0.02 2.10 16 15 C -0.13 -4.16 8.94 71.98 0.64 -3.52 16 16 C 0.53 16.55 5.62 87.66 0.49 17.04 16 17 O -0.53 -20.88 13.01 -3.07 -0.04 -20.92 16 18 N -0.66 -15.14 5.35 -303.42 -1.62 -16.76 16 19 C 0.15 3.57 6.29 38.10 0.24 3.81 16 20 C -0.13 -3.60 8.66 22.40 0.19 -3.41 16 21 C -0.15 -3.48 9.03 22.33 0.20 -3.28 16 22 C 0.07 1.63 6.70 22.56 0.15 1.78 16 23 O -0.33 -7.48 10.28 -80.30 -0.83 -8.30 16 24 C 0.02 0.24 9.81 113.37 1.11 1.35 16 25 C 0.11 2.49 6.70 22.55 0.15 2.64 16 26 O -0.32 -6.98 10.28 -79.52 -0.82 -7.80 16 27 C 0.02 0.18 9.81 113.37 1.11 1.29 16 28 C -0.19 -3.91 8.95 22.47 0.20 -3.71 16 29 H 0.04 1.81 6.61 -2.39 -0.02 1.80 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.06 1.81 6.42 -2.39 -0.02 1.80 16 32 H 0.06 2.62 6.58 -2.39 -0.02 2.61 16 33 H 0.06 2.49 5.98 -2.39 -0.01 2.48 16 34 H -0.02 -0.92 6.29 -2.38 -0.01 -0.94 16 35 H 0.02 1.11 6.02 -2.39 -0.01 1.09 16 36 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 38 H 0.06 2.21 6.28 -2.39 -0.02 2.19 16 39 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.43 6.60 8.82 -92.71 -0.82 5.79 16 41 H 0.12 3.78 6.35 -2.91 -0.02 3.77 16 42 H 0.16 2.84 6.29 -2.91 -0.02 2.82 16 43 H 0.06 0.74 7.65 -2.39 -0.02 0.72 16 44 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 0.76 7.67 -2.39 -0.02 0.74 16 46 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 48 H 0.06 0.65 7.66 -2.38 -0.02 0.64 16 49 H 0.16 2.29 6.29 -2.91 -0.02 2.27 16 Total: -1.00 -73.72 387.53 2.09 -71.62 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.17 Total: 19.86 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 6.75 Total: -3.51 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -5.17 Total: -97.46 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -1.68 Total: -37.03 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -73.72 2.09 -71.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040226.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.473 kcal (2) G-P(sol) polarization free energy of solvation -73.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds