Wall clock time and date at job start Sat Apr 11 2020 04:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46904 * 109.46775 * 2 1 4 4 C 1.46900 * 111.00069 * 64.20657 * 3 2 1 5 5 C 1.50697 * 109.47183 * 66.04248 * 4 3 2 6 6 H 1.07995 * 120.00152 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99869 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00084 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00134 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47082 * 59.99624 * 9 7 5 11 11 H 1.48491 * 109.47227 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46744 * 300.00025 * 9 7 5 13 13 C 1.46904 * 111.00141 * 300.24681 * 3 2 1 14 14 H 1.09003 * 109.46585 * 60.87651 * 13 3 2 15 15 C 1.52999 * 109.47008 * 180.87244 * 13 3 2 16 16 C 1.50692 * 109.47437 * 300.87942 * 13 3 2 17 17 O 1.21425 * 119.99872 * 336.32280 * 16 13 3 18 18 C 1.41551 * 120.00490 * 156.32628 * 16 13 3 19 19 N 1.38014 * 125.97428 * 0.02562 * 18 16 13 20 20 H 0.96997 * 125.36690 * 0.02562 * 19 18 16 21 21 C 1.34111 * 109.26404 * 180.02562 * 19 18 16 22 22 C 1.50703 * 125.65339 * 179.97438 * 21 19 18 23 23 C 1.38408 * 108.68395 * 0.02562 * 21 19 18 24 24 C 1.47281 * 126.40606 * 180.02562 * 23 21 19 25 25 O 1.21527 * 119.99637 * 89.96815 * 24 23 21 26 26 O 1.34751 * 119.99919 * 269.97257 * 24 23 21 27 27 C 1.45203 * 117.00006 * 179.97438 * 26 24 23 28 28 C 1.37811 * 125.97934 * 179.71475 * 18 16 13 29 29 C 1.50702 * 126.59511 * 359.97438 * 28 18 16 30 30 H 1.08994 * 109.47366 * 298.82222 * 1 2 3 31 31 H 1.09004 * 109.46701 * 58.81953 * 1 2 3 32 32 H 1.08996 * 109.46891 * 178.81564 * 1 2 3 33 33 H 1.08997 * 109.47171 * 240.00224 * 2 1 3 34 34 H 1.08992 * 109.46950 * 119.99522 * 2 1 3 35 35 H 1.08997 * 109.46911 * 306.03865 * 4 3 2 36 36 H 1.09001 * 109.47157 * 186.04578 * 4 3 2 37 37 H 0.97006 * 120.00077 * 180.02562 * 8 7 5 38 38 H 1.09007 * 109.46912 * 60.00271 * 15 13 3 39 39 H 1.08995 * 109.46821 * 179.97438 * 15 13 3 40 40 H 1.08994 * 109.47385 * 300.00643 * 15 13 3 41 41 H 1.09004 * 109.46814 * 90.03123 * 22 21 19 42 42 H 1.08998 * 109.46766 * 210.02332 * 22 21 19 43 43 H 1.08996 * 109.47437 * 330.02714 * 22 21 19 44 44 H 1.08993 * 109.47591 * 300.00522 * 27 26 24 45 45 H 1.09003 * 109.46779 * 60.00059 * 27 26 24 46 46 H 1.09003 * 109.47273 * 179.97438 * 27 26 24 47 47 H 1.08996 * 109.47473 * 89.99718 * 29 28 18 48 48 H 1.08998 * 109.47553 * 210.00131 * 29 28 18 49 49 H 1.09004 * 109.46504 * 330.00202 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6325 2.0803 1.2348 5 6 2.3379 1.4506 2.4081 6 1 3.0073 0.6176 2.2522 7 6 2.1288 1.9380 3.6808 8 7 1.3141 2.9528 3.8707 9 14 3.0038 1.1580 5.1353 10 1 4.4726 1.2674 4.9460 11 1 2.6123 1.8607 6.3834 12 1 2.6225 -0.2740 5.2323 13 6 1.5438 2.1117 -1.1848 14 1 0.4541 2.1397 -1.1803 15 6 2.0907 3.5404 -1.1605 16 6 2.0232 1.4112 -2.4299 17 8 3.0065 0.7002 -2.3860 18 6 1.3272 1.5820 -3.6506 19 7 0.2015 2.3576 -3.8404 20 1 -0.2440 2.8781 -3.1538 21 6 -0.1793 2.2782 -5.1239 22 6 -1.3655 2.9800 -5.7332 23 6 0.6973 1.4438 -5.7956 24 6 0.6420 1.0847 -7.2229 25 8 1.2280 1.7634 -8.0432 26 8 -0.0584 0.0039 -7.6191 27 6 -0.0694 -0.2896 -9.0411 28 6 1.6587 1.0077 -4.8587 29 6 2.8214 0.0873 -5.1270 30 1 -0.3634 0.4954 0.9003 31 1 -0.3633 0.5321 -0.8793 32 1 -0.3633 -1.0274 -0.0212 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 0.5543 2.0008 1.3737 36 1 1.9130 3.1311 1.1633 37 1 1.1672 3.2959 4.7660 38 1 3.1804 3.5123 -1.1649 39 1 1.7380 4.0793 -2.0398 40 1 1.7440 4.0470 -0.2600 41 1 -1.0573 3.9566 -6.1069 42 1 -1.7572 2.3830 -6.5568 43 1 -2.1398 3.1081 -4.9769 44 1 -0.4995 0.5528 -9.5827 45 1 0.9510 -0.4596 -9.3848 46 1 -0.6673 -1.1826 -9.2233 47 1 2.5115 -0.9455 -4.9682 48 1 3.1537 0.2125 -6.1575 49 1 3.6401 0.3293 -4.4493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040433.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:54 Heat of formation + Delta-G solvation = -72.062090 kcal Electronic energy + Delta-G solvation = -30098.220559 eV Core-core repulsion = 26026.756410 eV Total energy + Delta-G solvation = -4071.464148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.00361 -40.25612 -39.18679 -36.78084 -36.54535 -33.29430 -32.76365 -32.37876 -31.40450 -28.91875 -28.80477 -27.62187 -27.06710 -26.41754 -24.32632 -23.15137 -22.80704 -21.31371 -20.18372 -19.42071 -18.89565 -17.52072 -17.41638 -16.54057 -16.35090 -16.24406 -15.56720 -15.38785 -14.93307 -14.77563 -14.48444 -14.29810 -13.75693 -13.67672 -13.57386 -13.27923 -13.11665 -13.11211 -12.92763 -12.53468 -12.45295 -12.36986 -12.33462 -12.19270 -11.97110 -11.78175 -11.75456 -11.28875 -11.05946 -11.03630 -10.88207 -10.84861 -10.77785 -10.50749 -10.04062 -9.95775 -9.25549 -9.14173 -9.05091 -8.42862 -8.32760 -7.23994 -6.04948 -4.04705 1.03466 1.83610 1.90769 2.54925 2.93567 3.12599 3.33656 3.37243 3.41273 4.19533 4.31727 4.44186 4.59798 4.70173 4.80426 4.82172 4.89145 5.00533 5.06101 5.08488 5.25425 5.30830 5.36294 5.42832 5.46790 5.50949 5.62293 5.71328 5.73585 5.84279 5.89008 5.93309 6.01443 6.06118 6.16779 6.20119 6.31703 6.40747 6.54377 6.58555 6.64366 6.87698 7.03692 7.23854 7.33838 7.53739 7.75744 7.83970 8.07024 8.16428 8.51142 9.02445 9.59044 11.05923 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024703 B = 0.002573 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.170822 B =10877.795204 C =11193.856047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 N -0.512 5.512 4 C 0.186 3.814 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.036 3.964 14 H 0.048 0.952 15 C -0.141 4.141 16 C 0.421 3.579 17 O -0.424 6.424 18 C -0.077 4.077 19 N -0.509 5.509 20 H 0.426 0.574 21 C 0.116 3.884 22 C -0.099 4.099 23 C -0.221 4.221 24 C 0.551 3.449 25 O -0.500 6.500 26 O -0.352 6.352 27 C 0.033 3.967 28 C -0.022 4.022 29 C -0.099 4.099 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.086 0.914 35 H -0.003 1.003 36 H 0.037 0.963 37 H 0.261 0.739 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.102 0.898 47 H 0.077 0.923 48 H 0.061 0.939 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.677 -1.949 -22.623 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.074 4.074 3 N -0.236 5.236 4 C 0.061 3.939 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.074 4.074 14 H 0.065 0.935 15 C -0.198 4.198 16 C 0.298 3.702 17 O -0.296 6.296 18 C -0.186 4.186 19 N -0.104 5.104 20 H 0.266 0.734 21 C -0.008 4.008 22 C -0.157 4.157 23 C -0.229 4.229 24 C 0.394 3.606 25 O -0.386 6.386 26 O -0.268 6.268 27 C -0.061 4.061 28 C -0.029 4.029 29 C -0.155 4.155 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.015 0.985 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.120 0.880 47 H 0.095 0.905 48 H 0.080 0.920 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.537 -1.967 -22.557 23.568 hybrid contribution -0.910 0.029 1.009 1.359 sum -7.446 -1.938 -21.549 22.881 Atomic orbital electron populations 1.22406 0.99700 1.01113 1.01476 1.22094 0.91606 0.91264 1.02449 1.62285 1.58411 1.01485 1.01456 1.19905 0.94589 0.94713 0.84645 1.21102 1.26099 1.16445 0.90557 0.91872 1.24950 0.95471 0.95176 0.98926 1.69934 1.36749 1.25185 1.22196 0.86568 0.80185 0.79280 0.81452 1.20132 1.21435 1.20297 1.21952 0.97434 0.95787 0.92200 0.93497 1.21820 1.02918 0.93084 1.02006 1.20177 0.83353 0.79720 0.86959 1.90547 1.22341 1.30621 1.86109 1.19877 0.94855 1.06160 0.97679 1.41654 1.22871 1.36871 1.09040 0.73390 1.20560 0.97155 0.99208 0.83867 1.20584 0.93039 1.00667 1.01372 1.18197 1.02959 1.10363 0.91360 1.20299 0.74680 0.77464 0.88199 1.90851 1.42054 1.51154 1.54587 1.86700 1.66658 1.45211 1.28209 1.23301 1.03070 1.01892 0.77825 1.20025 0.95992 0.97178 0.89708 1.20496 0.95303 0.97551 1.02188 0.91319 0.94368 0.93157 0.92211 0.89565 0.98527 0.94483 0.92929 0.91098 0.93394 0.90018 0.89484 0.89648 0.90140 0.91879 0.91801 0.88008 0.90493 0.91962 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 9.24 37.16 0.34 -2.96 16 2 C 0.05 1.08 5.49 -3.82 -0.02 1.06 16 3 N -0.51 -10.87 4.29 -229.48 -0.98 -11.86 16 4 C 0.19 4.59 4.31 -4.98 -0.02 4.57 16 5 C -0.50 -13.85 8.45 -34.44 -0.29 -14.14 16 6 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.99 13.29 55.43 0.74 -25.26 16 9 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.04 0.62 1.66 -68.87 -0.11 0.51 16 14 H 0.05 0.74 5.71 -51.93 -0.30 0.44 16 15 C -0.14 -2.24 8.88 37.16 0.33 -1.91 16 16 C 0.42 6.92 5.26 -33.05 -0.17 6.74 16 17 O -0.42 -8.03 13.44 5.43 0.07 -7.96 16 18 C -0.08 -1.07 6.75 -83.98 -0.57 -1.64 16 19 N -0.51 -5.42 5.84 -6.61 -0.04 -5.46 16 20 H 0.43 3.54 8.20 -40.82 -0.33 3.21 16 21 C 0.12 1.19 7.19 -81.53 -0.59 0.60 16 22 C -0.10 -0.64 10.23 36.01 0.37 -0.27 16 23 C -0.22 -2.80 6.00 -105.06 -0.63 -3.43 16 24 C 0.55 6.91 7.12 34.41 0.24 7.16 16 25 O -0.50 -7.27 16.90 -19.29 -0.33 -7.60 16 26 O -0.35 -3.78 10.58 -40.63 -0.43 -4.21 16 27 C 0.03 0.23 10.57 101.05 1.07 1.30 16 28 C -0.02 -0.31 6.25 -103.68 -0.65 -0.96 16 29 C -0.10 -1.28 9.61 36.01 0.35 -0.93 16 30 H 0.07 1.36 6.43 -51.93 -0.33 1.02 16 31 H 0.04 0.60 6.36 -51.93 -0.33 0.27 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.15 6.17 -51.93 -0.32 0.83 16 34 H 0.09 1.87 6.75 -51.93 -0.35 1.52 16 35 H 0.00 -0.08 6.17 -51.93 -0.32 -0.40 16 36 H 0.04 0.96 5.73 -51.93 -0.30 0.66 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.07 1.22 8.14 -51.92 -0.42 0.79 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.40 6.15 -51.93 -0.32 1.08 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 49 H 0.09 1.29 6.42 -51.93 -0.33 0.96 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -33.50 396.41 -7.85 -41.35 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.38 Total: 1.34 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -0.45 Total: -2.84 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: -0.29 Total: -42.57 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.68 Total: -19.77 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.50 -7.85 -41.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040433.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.711 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds