Wall clock time and date at job start Sat Apr 11 2020 04:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46904 * 109.46775 * 2 1 4 4 C 1.46900 * 111.00069 * 64.20657 * 3 2 1 5 5 C 1.50697 * 109.47183 * 66.04248 * 4 3 2 6 6 H 1.07995 * 120.00152 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99869 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00084 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00134 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47082 * 59.99624 * 9 7 5 11 11 H 1.48491 * 109.47227 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46744 * 300.00025 * 9 7 5 13 13 C 1.46904 * 111.00141 * 300.24681 * 3 2 1 14 14 H 1.09003 * 109.46585 * 60.87651 * 13 3 2 15 15 C 1.52999 * 109.47008 * 180.87244 * 13 3 2 16 16 C 1.50692 * 109.47437 * 300.87942 * 13 3 2 17 17 O 1.21425 * 119.99872 * 336.32280 * 16 13 3 18 18 C 1.41551 * 120.00490 * 156.32628 * 16 13 3 19 19 N 1.38014 * 125.97428 * 0.02562 * 18 16 13 20 20 H 0.96997 * 125.36690 * 0.02562 * 19 18 16 21 21 C 1.34111 * 109.26404 * 180.02562 * 19 18 16 22 22 C 1.50703 * 125.65339 * 179.97438 * 21 19 18 23 23 C 1.38408 * 108.68395 * 0.02562 * 21 19 18 24 24 C 1.47281 * 126.40606 * 180.02562 * 23 21 19 25 25 O 1.21527 * 119.99637 * 89.96815 * 24 23 21 26 26 O 1.34751 * 119.99919 * 269.97257 * 24 23 21 27 27 C 1.45203 * 117.00006 * 179.97438 * 26 24 23 28 28 C 1.37811 * 125.97934 * 179.71475 * 18 16 13 29 29 C 1.50702 * 126.59511 * 359.97438 * 28 18 16 30 30 H 1.08994 * 109.47366 * 298.82222 * 1 2 3 31 31 H 1.09004 * 109.46701 * 58.81953 * 1 2 3 32 32 H 1.08996 * 109.46891 * 178.81564 * 1 2 3 33 33 H 1.08997 * 109.47171 * 240.00224 * 2 1 3 34 34 H 1.08992 * 109.46950 * 119.99522 * 2 1 3 35 35 H 1.08997 * 109.46911 * 306.03865 * 4 3 2 36 36 H 1.09001 * 109.47157 * 186.04578 * 4 3 2 37 37 H 0.97006 * 120.00077 * 180.02562 * 8 7 5 38 38 H 1.09007 * 109.46912 * 60.00271 * 15 13 3 39 39 H 1.08995 * 109.46821 * 179.97438 * 15 13 3 40 40 H 1.08994 * 109.47385 * 300.00643 * 15 13 3 41 41 H 1.09004 * 109.46814 * 90.03123 * 22 21 19 42 42 H 1.08998 * 109.46766 * 210.02332 * 22 21 19 43 43 H 1.08996 * 109.47437 * 330.02714 * 22 21 19 44 44 H 1.08993 * 109.47591 * 300.00522 * 27 26 24 45 45 H 1.09003 * 109.46779 * 60.00059 * 27 26 24 46 46 H 1.09003 * 109.47273 * 179.97438 * 27 26 24 47 47 H 1.08996 * 109.47473 * 89.99718 * 29 28 18 48 48 H 1.08998 * 109.47553 * 210.00131 * 29 28 18 49 49 H 1.09004 * 109.46504 * 330.00202 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6325 2.0803 1.2348 5 6 2.3379 1.4506 2.4081 6 1 3.0073 0.6176 2.2522 7 6 2.1288 1.9380 3.6808 8 7 1.3141 2.9528 3.8707 9 14 3.0038 1.1580 5.1353 10 1 4.4726 1.2674 4.9460 11 1 2.6123 1.8607 6.3834 12 1 2.6225 -0.2740 5.2323 13 6 1.5438 2.1117 -1.1848 14 1 0.4541 2.1397 -1.1803 15 6 2.0907 3.5404 -1.1605 16 6 2.0232 1.4112 -2.4299 17 8 3.0065 0.7002 -2.3860 18 6 1.3272 1.5820 -3.6506 19 7 0.2015 2.3576 -3.8404 20 1 -0.2440 2.8781 -3.1538 21 6 -0.1793 2.2782 -5.1239 22 6 -1.3655 2.9800 -5.7332 23 6 0.6973 1.4438 -5.7956 24 6 0.6420 1.0847 -7.2229 25 8 1.2280 1.7634 -8.0432 26 8 -0.0584 0.0039 -7.6191 27 6 -0.0694 -0.2896 -9.0411 28 6 1.6587 1.0077 -4.8587 29 6 2.8214 0.0873 -5.1270 30 1 -0.3634 0.4954 0.9003 31 1 -0.3633 0.5321 -0.8793 32 1 -0.3633 -1.0274 -0.0212 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 0.5543 2.0008 1.3737 36 1 1.9130 3.1311 1.1633 37 1 1.1672 3.2959 4.7660 38 1 3.1804 3.5123 -1.1649 39 1 1.7380 4.0793 -2.0398 40 1 1.7440 4.0470 -0.2600 41 1 -1.0573 3.9566 -6.1069 42 1 -1.7572 2.3830 -6.5568 43 1 -2.1398 3.1081 -4.9769 44 1 -0.4995 0.5528 -9.5827 45 1 0.9510 -0.4596 -9.3848 46 1 -0.6673 -1.1826 -9.2233 47 1 2.5115 -0.9455 -4.9682 48 1 3.1537 0.2125 -6.1575 49 1 3.6401 0.3293 -4.4493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040433.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:53 Heat of formation + Delta-G solvation = -93.262193 kcal Electronic energy + Delta-G solvation = -30099.139864 eV Core-core repulsion = 26026.756410 eV Total energy + Delta-G solvation = -4072.383454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.97576 -41.21614 -40.46461 -38.31972 -37.43302 -34.81010 -34.20010 -33.58174 -32.56612 -30.62198 -29.57219 -28.36498 -28.21136 -28.11073 -25.63393 -24.70766 -24.04039 -22.54425 -21.22571 -20.54030 -20.14386 -18.67532 -18.40897 -18.26987 -17.39294 -17.27747 -16.85747 -16.70932 -16.55485 -15.96431 -15.87471 -15.60318 -14.91952 -14.71140 -14.51585 -14.45829 -14.24374 -14.09083 -14.05614 -13.79545 -13.72825 -13.48754 -13.34029 -13.27350 -13.20073 -13.00687 -12.96874 -12.72782 -12.65290 -12.62779 -12.39104 -12.34179 -11.94647 -11.81600 -11.79060 -11.55315 -11.25435 -10.59171 -10.44185 -10.06433 -9.30019 -8.91801 -8.18149 -6.24847 -0.04652 0.94592 0.98155 1.40866 1.42970 1.50681 1.70342 1.94811 2.09632 2.41032 2.94460 3.14563 3.32231 3.58864 3.79566 3.80409 4.03228 4.08073 4.12619 4.21681 4.32957 4.35268 4.37876 4.39922 4.43409 4.53957 4.58043 4.61095 4.65027 4.69705 4.74156 4.81603 4.89203 4.93459 4.97997 5.03772 5.07293 5.18582 5.21288 5.29718 5.37491 5.38940 5.45536 5.59750 5.68715 6.09317 6.23765 6.34188 6.53804 6.65606 6.72782 6.89627 7.43106 8.91914 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024703 B = 0.002573 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.170822 B =10877.795204 C =11193.856047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.057 3.943 3 N -0.530 5.530 4 C 0.204 3.796 5 C -0.521 4.521 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.271 1.271 13 C 0.034 3.966 14 H 0.068 0.932 15 C -0.135 4.135 16 C 0.430 3.570 17 O -0.461 6.461 18 C -0.100 4.100 19 N -0.498 5.498 20 H 0.439 0.561 21 C 0.147 3.853 22 C -0.101 4.101 23 C -0.250 4.250 24 C 0.558 3.442 25 O -0.526 6.526 26 O -0.356 6.356 27 C 0.025 3.975 28 C -0.027 4.027 29 C -0.097 4.097 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.060 0.940 35 H -0.019 1.019 36 H 0.022 0.978 37 H 0.264 0.736 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.132 0.868 47 H 0.083 0.917 48 H 0.068 0.932 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 -1.943 -24.161 26.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.072 4.072 3 N -0.255 5.255 4 C 0.078 3.922 5 C -0.559 4.559 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.569 5.569 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.196 1.196 13 C -0.076 4.076 14 H 0.085 0.915 15 C -0.193 4.193 16 C 0.310 3.690 17 O -0.337 6.337 18 C -0.208 4.208 19 N -0.095 5.095 20 H 0.281 0.719 21 C 0.021 3.979 22 C -0.158 4.158 23 C -0.257 4.257 24 C 0.401 3.599 25 O -0.415 6.415 26 O -0.272 6.272 27 C -0.068 4.068 28 C -0.034 4.034 29 C -0.154 4.154 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.078 0.922 35 H -0.001 1.001 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.125 0.875 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.150 0.850 47 H 0.101 0.899 48 H 0.087 0.913 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.384 -1.969 -24.094 25.587 hybrid contribution -0.403 0.014 1.316 1.376 sum -8.788 -1.955 -22.778 24.493 Atomic orbital electron populations 1.22267 0.97650 1.02502 1.01087 1.22010 0.93294 0.90432 1.01421 1.62114 1.59554 1.02175 1.01643 1.19528 0.93091 0.93883 0.85663 1.21399 1.26155 1.16328 0.92054 0.92963 1.25716 0.96139 0.95639 1.01486 1.70031 1.37830 1.26229 1.22858 0.85599 0.78982 0.78676 0.78340 1.19915 1.20661 1.19592 1.22082 0.98577 0.95963 0.90949 0.91478 1.21764 1.01693 0.92759 1.03040 1.20098 0.82840 0.78765 0.87342 1.90541 1.24006 1.32525 1.86590 1.19375 0.96501 1.08393 0.96531 1.41614 1.21895 1.36282 1.09669 0.71909 1.21167 0.96780 0.96841 0.83143 1.20815 0.91977 1.00853 1.02190 1.18379 1.03764 1.11885 0.91644 1.20247 0.74225 0.77456 0.87926 1.90836 1.43282 1.52172 1.55258 1.86684 1.65944 1.44219 1.30343 1.23638 1.03730 1.03535 0.75932 1.20220 0.96148 0.96883 0.90191 1.20461 0.94869 0.97935 1.02094 0.93818 0.92319 0.91021 0.91543 0.92182 1.00102 0.96051 0.92754 0.92954 0.89483 0.91616 0.88012 0.88975 0.87453 0.91153 0.92021 0.84977 0.89858 0.91307 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.07 9.24 71.98 0.67 -5.41 16 2 C 0.06 2.29 5.49 86.30 0.47 2.76 16 3 N -0.53 -23.02 4.29 -879.93 -3.77 -26.79 16 4 C 0.20 10.36 4.31 85.56 0.37 10.73 16 5 C -0.52 -29.43 8.45 25.60 0.22 -29.21 16 6 H 0.05 3.00 7.13 -2.91 -0.02 2.98 16 7 C 0.01 0.48 5.46 84.65 0.46 0.94 16 8 N -0.93 -54.32 13.29 21.45 0.28 -54.03 16 9 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 C 0.03 1.15 1.66 44.17 0.07 1.22 16 14 H 0.07 2.00 5.71 -2.39 -0.01 1.99 16 15 C -0.14 -4.27 8.88 71.98 0.64 -3.63 16 16 C 0.43 13.97 5.26 26.50 0.14 14.11 16 17 O -0.46 -17.85 13.44 -3.48 -0.05 -17.90 16 18 C -0.10 -2.64 6.75 38.89 0.26 -2.38 16 19 N -0.50 -9.23 5.84 -174.81 -1.02 -10.25 16 20 H 0.44 5.81 8.20 -92.71 -0.76 5.05 16 21 C 0.15 2.56 7.19 42.25 0.30 2.87 16 22 C -0.10 -0.89 10.23 71.24 0.73 -0.17 16 23 C -0.25 -5.86 6.00 -20.15 -0.12 -5.98 16 24 C 0.56 13.10 7.12 70.20 0.50 13.60 16 25 O -0.53 -14.70 16.90 19.75 0.33 -14.37 16 26 O -0.36 -6.96 10.58 -56.61 -0.60 -7.56 16 27 C 0.02 0.30 10.57 113.37 1.20 1.49 16 28 C -0.03 -0.73 6.25 -19.25 -0.12 -0.85 16 29 C -0.10 -2.52 9.61 71.24 0.68 -1.83 16 30 H 0.04 1.72 6.43 -2.39 -0.02 1.71 16 31 H 0.06 1.75 6.36 -2.38 -0.02 1.73 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.07 2.59 6.17 -2.39 -0.01 2.58 16 34 H 0.06 2.70 6.75 -2.39 -0.02 2.68 16 35 H -0.02 -0.99 6.17 -2.39 -0.01 -1.01 16 36 H 0.02 1.15 5.73 -2.39 -0.01 1.14 16 37 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 38 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.06 2.29 6.15 -2.39 -0.01 2.27 16 41 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.09 0.77 7.92 -2.39 -0.02 0.75 16 43 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.07 1.64 8.05 -2.39 -0.02 1.62 16 49 H 0.07 2.21 6.42 -2.38 -0.02 2.19 16 Total: -1.00 -74.48 396.41 3.90 -70.58 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.22 Total: 15.43 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 6.47 Total: -1.73 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -4.51 Total: -91.07 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -0.31 Total: -39.82 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -74.48 3.90 -70.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040433.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.680 kcal (2) G-P(sol) polarization free energy of solvation -74.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds