Wall clock time and date at job start Sat Apr 11 2020 04:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47322 * 2 1 4 4 C 1.53003 * 109.46720 * 239.99950 * 2 1 3 5 5 C 1.50703 * 109.47242 * 65.00243 * 4 2 1 6 6 O 1.21280 * 119.99564 * 0.02562 * 5 4 2 7 7 N 1.34772 * 120.00059 * 179.97438 * 5 4 2 8 8 C 1.46929 * 120.63003 * 4.72966 * 7 5 4 9 9 C 1.53192 * 108.77324 * 126.41573 * 8 7 5 10 10 C 1.53033 * 109.31663 * 54.63660 * 9 8 7 11 11 C 1.53076 * 109.65521 * 298.69951 * 10 9 8 12 12 C 1.46925 * 120.63374 * 184.75582 * 7 5 4 13 13 H 1.08993 * 109.59219 * 113.65478 * 12 7 5 14 14 C 1.53009 * 109.58334 * 353.37086 * 12 7 5 15 15 N 1.46492 * 109.46946 * 179.54533 * 14 12 7 16 16 C 1.46505 * 119.99942 * 273.61870 * 15 14 12 17 17 C 1.36938 * 120.00289 * 93.61708 * 15 14 12 18 18 H 1.07996 * 119.99973 * 326.82785 * 17 15 14 19 19 C 1.38816 * 120.00181 * 146.81719 * 17 15 14 20 20 N 1.31626 * 119.99945 * 334.40738 * 19 17 15 21 21 Si 1.86796 * 120.00001 * 154.40024 * 19 17 15 22 22 H 1.48497 * 109.47339 * 60.00381 * 21 19 17 23 23 H 1.48497 * 109.47022 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47182 * 300.00134 * 21 19 17 25 25 C 1.52992 * 109.47086 * 120.00353 * 2 1 3 26 26 F 1.39903 * 109.47469 * 179.97438 * 25 2 1 27 27 F 1.39903 * 109.46970 * 299.99688 * 25 2 1 28 28 F 1.39901 * 109.47582 * 59.99786 * 25 2 1 29 29 H 1.09001 * 109.46988 * 300.00331 * 1 2 3 30 30 H 1.09006 * 109.46917 * 59.99793 * 1 2 3 31 31 H 1.08995 * 109.47322 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47545 * 305.00273 * 4 2 1 33 33 H 1.09001 * 109.46936 * 185.00181 * 4 2 1 34 34 H 1.09000 * 109.58986 * 246.19849 * 8 7 5 35 35 H 1.08999 * 109.58728 * 6.48547 * 8 7 5 36 36 H 1.09005 * 109.49877 * 174.58572 * 9 8 7 37 37 H 1.09005 * 109.49716 * 294.64520 * 9 8 7 38 38 H 1.09007 * 109.46247 * 58.65233 * 10 9 8 39 39 H 1.09000 * 109.46694 * 178.63139 * 10 9 8 40 40 H 1.09001 * 109.39432 * 301.27444 * 11 10 9 41 41 H 1.09011 * 109.62144 * 181.16750 * 11 10 9 42 42 H 1.09005 * 109.46668 * 59.54374 * 14 12 7 43 43 H 1.08996 * 109.47124 * 299.54709 * 14 12 7 44 44 H 1.08998 * 109.46977 * 179.85266 * 16 15 14 45 45 H 1.08997 * 109.47323 * 299.85157 * 16 15 14 46 46 H 1.08998 * 109.47476 * 59.85241 * 16 15 14 47 47 H 0.96998 * 119.99762 * 356.55178 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4767 6 8 1.0118 1.0874 -2.3632 7 7 1.9852 -0.3914 -3.7002 8 6 2.6577 -1.6879 -3.8605 9 6 1.8680 -2.5318 -4.8660 10 6 1.7022 -1.7446 -6.1678 11 6 0.9179 -0.4586 -5.8954 12 6 1.6953 0.4071 -4.8990 13 1 2.6296 0.7372 -5.3529 14 6 0.8542 1.6255 -4.5126 15 7 0.5759 2.4255 -5.7078 16 6 1.5357 3.4401 -6.1500 17 6 -0.5815 2.2249 -6.4118 18 1 -1.0116 1.2363 -6.4734 19 6 -1.2019 3.2925 -7.0460 20 7 -1.0209 4.5179 -6.6009 21 14 -2.2936 2.9901 -8.5313 22 1 -3.4175 2.0992 -8.1465 23 1 -2.8325 4.2842 -9.0212 24 1 -1.4980 2.3466 -9.6076 25 6 2.0400 -0.7213 1.2491 26 9 3.4390 -0.7218 1.2489 27 9 1.5737 -0.0618 2.3915 28 9 1.5737 -2.0403 1.2492 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6053 -1.7198 -1.2953 33 1 3.1263 -0.7996 -1.2057 34 1 3.6706 -1.5308 -4.2313 35 1 2.6958 -2.2011 -2.8997 36 1 2.4074 -3.4575 -5.0669 37 1 0.8863 -2.7650 -4.4535 38 1 2.6845 -1.4909 -6.5665 39 1 1.1616 -2.3523 -6.8934 40 1 -0.0561 -0.7106 -5.4759 41 1 0.7821 0.0916 -6.8267 42 1 1.4017 2.2304 -3.7897 43 1 -0.0851 1.2932 -4.0709 44 1 1.1608 3.9270 -7.0502 45 1 1.6676 4.1829 -5.3633 46 1 2.4929 2.9654 -6.3656 47 1 -0.4949 4.6703 -5.8003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001750928626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:06 Heat of formation + Delta-G solvation = -168.790126 kcal Electronic energy + Delta-G solvation = -31510.931212 eV Core-core repulsion = 26893.415881 eV Total energy + Delta-G solvation = -4617.515331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.32290 -47.80253 -47.78303 -40.51415 -37.61763 -35.76184 -35.09257 -32.81104 -32.10667 -30.07389 -28.38173 -26.59896 -26.29383 -25.52521 -24.41361 -22.61033 -21.71654 -20.58019 -20.41861 -19.13714 -18.63444 -18.30281 -17.68695 -17.17972 -16.19178 -16.00392 -15.54174 -14.96512 -14.72191 -14.43954 -14.31868 -14.23443 -14.22222 -13.98552 -13.94837 -13.90272 -13.64798 -13.47343 -13.29265 -13.12295 -12.95135 -12.82788 -12.70684 -12.27047 -11.67078 -11.59004 -11.50770 -11.45939 -11.24610 -11.07330 -10.85644 -10.68254 -10.53420 -10.45043 -10.31086 -10.11624 -10.01860 -9.37026 -8.88970 -8.32564 -8.22060 -6.71950 -6.00371 -3.20255 2.49293 2.70392 3.04739 3.51406 3.53815 3.60507 3.72206 3.79140 3.85789 4.42734 4.59047 4.61571 4.66499 4.75345 4.89754 4.99754 5.06246 5.25256 5.28338 5.33154 5.41180 5.45665 5.47569 5.63724 5.65529 5.74411 5.81360 5.85936 5.93285 6.06664 6.09976 6.18081 6.37948 6.41123 6.66788 6.67586 6.82020 6.91435 6.96791 7.20139 7.32686 7.57766 8.12679 8.34044 8.68596 9.25023 9.94346 10.40076 11.27261 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.015323 B = 0.003310 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.862565 B = 8456.873676 C = 9426.997140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.117 4.117 3 H 0.123 0.877 4 C -0.144 4.144 5 C 0.514 3.486 6 O -0.516 6.516 7 N -0.603 5.603 8 C 0.106 3.894 9 C -0.133 4.133 10 C -0.122 4.122 11 C -0.119 4.119 12 C 0.125 3.875 13 H 0.060 0.940 14 C 0.164 3.836 15 N -0.602 5.602 16 C 0.127 3.873 17 C -0.354 4.354 18 H 0.055 0.945 19 C -0.022 4.022 20 N -0.912 5.912 21 Si 1.062 2.938 22 H -0.293 1.293 23 H -0.286 1.286 24 H -0.294 1.294 25 C 0.453 3.547 26 F -0.186 7.186 27 F -0.182 7.182 28 F -0.184 7.184 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.005 0.995 46 H -0.003 1.003 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.284 -15.646 11.513 21.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.137 4.137 3 H 0.141 0.859 4 C -0.184 4.184 5 C 0.301 3.699 6 O -0.393 6.393 7 N -0.337 5.337 8 C -0.018 4.018 9 C -0.171 4.171 10 C -0.160 4.160 11 C -0.157 4.157 12 C 0.021 3.979 13 H 0.078 0.922 14 C 0.038 3.962 15 N -0.327 5.327 16 C -0.018 4.018 17 C -0.483 4.483 18 H 0.073 0.927 19 C -0.225 4.225 20 N -0.551 5.551 21 Si 0.892 3.108 22 H -0.220 1.220 23 H -0.212 1.212 24 H -0.221 1.221 25 C 0.399 3.601 26 F -0.167 7.167 27 F -0.163 7.163 28 F -0.165 7.165 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.024 0.976 46 H 0.015 0.985 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.009 -14.328 10.428 19.447 hybrid contribution 1.239 -1.184 1.376 2.198 sum 9.248 -15.512 11.804 21.575 Atomic orbital electron populations 1.22015 0.90727 1.03283 1.05576 1.22179 1.00506 1.01694 0.89278 0.85868 1.21786 1.03429 1.00743 0.92477 1.20123 0.79933 0.85821 0.84011 1.90817 1.38779 1.24085 1.85571 1.48297 1.58832 1.20040 1.06539 1.21734 0.96101 0.83985 0.99958 1.21898 1.00750 0.98045 0.96428 1.21590 1.00691 0.97340 0.96355 1.21927 0.98075 0.94631 1.01058 1.22348 0.98997 0.92873 0.83692 0.92210 1.21370 0.97688 0.89863 0.87327 1.44122 1.19263 1.41573 1.27714 1.20996 0.90736 0.91350 0.98753 1.19898 1.02673 0.94717 1.31058 0.92738 1.25877 0.99502 0.93344 1.03758 1.70759 1.38312 1.21784 1.24232 0.83564 0.75726 0.75295 0.76191 1.22019 1.21196 1.22100 1.20709 0.75278 0.77673 0.86461 1.93174 1.30272 1.96437 1.96832 1.93179 1.88455 1.80738 1.53943 1.93162 1.88459 1.38066 1.96848 0.91469 0.87906 0.91973 0.87937 0.88070 0.91502 0.90256 0.91223 0.91600 0.92322 0.92088 0.92255 0.88831 0.92737 0.92063 0.91430 0.97638 0.98492 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 8.69 37.16 0.32 -1.41 16 2 C -0.12 -1.20 2.01 -90.62 -0.18 -1.38 16 3 H 0.12 1.33 7.95 -51.93 -0.41 0.92 16 4 C -0.14 -1.42 3.33 -27.88 -0.09 -1.51 16 5 C 0.51 7.20 7.33 -10.99 -0.08 7.12 16 6 O -0.52 -9.17 9.37 5.56 0.05 -9.12 16 7 N -0.60 -8.35 2.97 -165.22 -0.49 -8.84 16 8 C 0.11 1.05 6.33 -3.71 -0.02 1.02 16 9 C -0.13 -1.34 6.08 -26.61 -0.16 -1.50 16 10 C -0.12 -1.54 5.88 -26.67 -0.16 -1.69 16 11 C -0.12 -2.01 4.23 -26.59 -0.11 -2.12 16 12 C 0.13 2.19 3.19 -67.60 -0.22 1.98 16 13 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 14 C 0.16 3.61 3.64 -4.04 -0.01 3.59 16 15 N -0.60 -15.21 2.43 -181.12 -0.44 -15.65 16 16 C 0.13 3.09 9.09 59.85 0.54 3.64 16 17 C -0.35 -9.73 8.18 -15.06 -0.12 -9.85 16 18 H 0.05 1.49 6.92 -52.49 -0.36 1.13 16 19 C -0.02 -0.62 4.60 -17.43 -0.08 -0.70 16 20 N -0.91 -27.71 12.55 55.49 0.70 -27.01 16 21 Si 1.06 25.25 29.99 -169.99 -5.10 20.16 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.45 4.54 2.69 37.15 0.10 4.64 16 26 F -0.19 -1.90 16.71 2.25 0.04 -1.86 16 27 F -0.18 -1.98 16.80 2.25 0.04 -1.95 16 28 F -0.18 -1.85 16.37 2.25 0.04 -1.82 16 29 H 0.07 0.69 7.80 -51.93 -0.41 0.28 16 30 H 0.10 1.40 5.95 -51.93 -0.31 1.09 16 31 H 0.06 0.61 7.80 -51.93 -0.41 0.21 16 32 H 0.10 0.85 7.30 -51.93 -0.38 0.47 16 33 H 0.10 0.83 7.62 -51.93 -0.40 0.44 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.59 5.96 -51.93 -0.31 0.28 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.86 6.73 -51.92 -0.35 1.51 16 42 H 0.05 1.26 6.34 -51.93 -0.33 0.93 16 43 H 0.06 1.49 6.96 -51.93 -0.36 1.12 16 44 H 0.07 1.79 6.31 -51.93 -0.33 1.46 16 45 H 0.01 0.13 8.07 -51.93 -0.42 -0.29 16 46 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 47 H 0.27 8.37 7.02 -40.82 -0.29 8.08 16 LS Contribution 367.65 15.07 5.54 5.54 Total: -1.00 -31.07 367.65 -7.14 -38.20 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.23 Total: 0.53 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -0.28 Total: 1.82 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.23 Total: -51.50 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.05 Total: -9.12 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.11 Total: -5.63 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.10 Total: 20.16 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.07 -7.14 -38.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001750928626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.589 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds