Wall clock time and date at job start Sat Apr 11 2020 04:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47322 * 2 1 4 4 C 1.53003 * 109.46720 * 239.99950 * 2 1 3 5 5 C 1.50703 * 109.47242 * 65.00243 * 4 2 1 6 6 O 1.21280 * 119.99564 * 0.02562 * 5 4 2 7 7 N 1.34772 * 120.00059 * 179.97438 * 5 4 2 8 8 C 1.46929 * 120.63003 * 4.72966 * 7 5 4 9 9 C 1.53192 * 108.77324 * 126.41573 * 8 7 5 10 10 C 1.53033 * 109.31663 * 54.63660 * 9 8 7 11 11 C 1.53076 * 109.65521 * 298.69951 * 10 9 8 12 12 C 1.46925 * 120.63374 * 184.75582 * 7 5 4 13 13 H 1.08993 * 109.59219 * 113.65478 * 12 7 5 14 14 C 1.53009 * 109.58334 * 353.37086 * 12 7 5 15 15 N 1.46492 * 109.46946 * 179.54533 * 14 12 7 16 16 C 1.46505 * 119.99942 * 273.61870 * 15 14 12 17 17 C 1.36938 * 120.00289 * 93.61708 * 15 14 12 18 18 H 1.07996 * 119.99973 * 326.82785 * 17 15 14 19 19 C 1.38816 * 120.00181 * 146.81719 * 17 15 14 20 20 N 1.31626 * 119.99945 * 334.40738 * 19 17 15 21 21 Si 1.86796 * 120.00001 * 154.40024 * 19 17 15 22 22 H 1.48497 * 109.47339 * 60.00381 * 21 19 17 23 23 H 1.48497 * 109.47022 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47182 * 300.00134 * 21 19 17 25 25 C 1.52992 * 109.47086 * 120.00353 * 2 1 3 26 26 F 1.39903 * 109.47469 * 179.97438 * 25 2 1 27 27 F 1.39903 * 109.46970 * 299.99688 * 25 2 1 28 28 F 1.39901 * 109.47582 * 59.99786 * 25 2 1 29 29 H 1.09001 * 109.46988 * 300.00331 * 1 2 3 30 30 H 1.09006 * 109.46917 * 59.99793 * 1 2 3 31 31 H 1.08995 * 109.47322 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47545 * 305.00273 * 4 2 1 33 33 H 1.09001 * 109.46936 * 185.00181 * 4 2 1 34 34 H 1.09000 * 109.58986 * 246.19849 * 8 7 5 35 35 H 1.08999 * 109.58728 * 6.48547 * 8 7 5 36 36 H 1.09005 * 109.49877 * 174.58572 * 9 8 7 37 37 H 1.09005 * 109.49716 * 294.64520 * 9 8 7 38 38 H 1.09007 * 109.46247 * 58.65233 * 10 9 8 39 39 H 1.09000 * 109.46694 * 178.63139 * 10 9 8 40 40 H 1.09001 * 109.39432 * 301.27444 * 11 10 9 41 41 H 1.09011 * 109.62144 * 181.16750 * 11 10 9 42 42 H 1.09005 * 109.46668 * 59.54374 * 14 12 7 43 43 H 1.08996 * 109.47124 * 299.54709 * 14 12 7 44 44 H 1.08998 * 109.46977 * 179.85266 * 16 15 14 45 45 H 1.08997 * 109.47323 * 299.85157 * 16 15 14 46 46 H 1.08998 * 109.47476 * 59.85241 * 16 15 14 47 47 H 0.96998 * 119.99762 * 356.55178 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4767 6 8 1.0118 1.0874 -2.3632 7 7 1.9852 -0.3914 -3.7002 8 6 2.6577 -1.6879 -3.8605 9 6 1.8680 -2.5318 -4.8660 10 6 1.7022 -1.7446 -6.1678 11 6 0.9179 -0.4586 -5.8954 12 6 1.6953 0.4071 -4.8990 13 1 2.6296 0.7372 -5.3529 14 6 0.8542 1.6255 -4.5126 15 7 0.5759 2.4255 -5.7078 16 6 1.5357 3.4401 -6.1500 17 6 -0.5815 2.2249 -6.4118 18 1 -1.0116 1.2363 -6.4734 19 6 -1.2019 3.2925 -7.0460 20 7 -1.0209 4.5179 -6.6009 21 14 -2.2936 2.9901 -8.5313 22 1 -3.4175 2.0992 -8.1465 23 1 -2.8325 4.2842 -9.0212 24 1 -1.4980 2.3466 -9.6076 25 6 2.0400 -0.7213 1.2491 26 9 3.4390 -0.7218 1.2489 27 9 1.5737 -0.0618 2.3915 28 9 1.5737 -2.0403 1.2492 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6053 -1.7198 -1.2953 33 1 3.1263 -0.7996 -1.2057 34 1 3.6706 -1.5308 -4.2313 35 1 2.6958 -2.2011 -2.8997 36 1 2.4074 -3.4575 -5.0669 37 1 0.8863 -2.7650 -4.4535 38 1 2.6845 -1.4909 -6.5665 39 1 1.1616 -2.3523 -6.8934 40 1 -0.0561 -0.7106 -5.4759 41 1 0.7821 0.0916 -6.8267 42 1 1.4017 2.2304 -3.7897 43 1 -0.0851 1.2932 -4.0709 44 1 1.1608 3.9270 -7.0502 45 1 1.6676 4.1829 -5.3633 46 1 2.4929 2.9654 -6.3656 47 1 -0.4949 4.6703 -5.8003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001750928626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:05 Heat of formation + Delta-G solvation = -186.047092 kcal Electronic energy + Delta-G solvation = -31511.679530 eV Core-core repulsion = 26893.415881 eV Total energy + Delta-G solvation = -4618.263649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.13241 -48.62015 -48.58201 -41.68536 -38.82024 -37.51676 -36.13215 -33.98930 -33.75113 -31.75902 -29.33538 -28.16027 -27.56069 -27.15515 -25.57147 -24.05128 -22.85444 -22.07974 -21.58630 -20.15877 -19.46738 -19.25392 -19.19553 -18.52974 -17.30807 -17.20218 -16.66119 -16.13344 -16.04893 -15.61666 -15.53392 -15.42586 -15.32852 -15.03683 -15.00375 -14.91975 -14.75893 -14.73553 -14.63959 -14.39030 -14.23919 -13.95725 -13.91797 -13.25376 -13.21684 -13.02246 -12.77148 -12.53844 -12.43358 -12.38233 -12.30654 -12.23426 -11.99328 -11.90632 -11.83325 -11.58058 -11.46831 -11.33407 -10.41427 -10.24124 -9.49001 -8.83540 -8.22149 -5.41997 1.57061 1.60233 1.64502 1.65162 1.83594 2.01627 2.67419 2.76730 2.95743 3.04491 3.25272 3.52694 3.63551 3.77869 3.81256 3.91345 3.94920 4.05337 4.13922 4.20305 4.35337 4.43536 4.47828 4.50457 4.61939 4.64578 4.69526 4.74038 4.82418 4.86841 4.89881 5.00104 5.05269 5.11046 5.13666 5.17942 5.24960 5.33454 5.37099 5.50450 5.71871 5.93255 6.41437 6.49148 7.08735 7.25744 7.82129 8.26569 9.00776 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.015323 B = 0.003310 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.862565 B = 8456.873676 C = 9426.997140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 H 0.114 0.886 4 C -0.132 4.132 5 C 0.506 3.494 6 O -0.564 6.564 7 N -0.604 5.604 8 C 0.099 3.901 9 C -0.128 4.128 10 C -0.116 4.116 11 C -0.111 4.111 12 C 0.139 3.861 13 H 0.059 0.941 14 C 0.177 3.823 15 N -0.620 5.620 16 C 0.139 3.861 17 C -0.348 4.348 18 H 0.051 0.949 19 C -0.076 4.076 20 N -0.941 5.941 21 Si 1.113 2.887 22 H -0.278 1.278 23 H -0.293 1.293 24 H -0.275 1.275 25 C 0.463 3.537 26 F -0.183 7.183 27 F -0.188 7.188 28 F -0.180 7.180 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.036 0.964 41 H 0.057 0.943 42 H 0.040 0.960 43 H 0.029 0.971 44 H 0.042 0.958 45 H -0.003 1.003 46 H 0.024 0.976 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.906 -19.125 11.807 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.135 4.135 3 H 0.132 0.868 4 C -0.171 4.171 5 C 0.296 3.704 6 O -0.443 6.443 7 N -0.338 5.338 8 C -0.022 4.022 9 C -0.166 4.166 10 C -0.154 4.154 11 C -0.149 4.149 12 C 0.034 3.966 13 H 0.077 0.923 14 C 0.052 3.948 15 N -0.345 5.345 16 C -0.007 4.007 17 C -0.478 4.478 18 H 0.069 0.931 19 C -0.273 4.273 20 N -0.582 5.582 21 Si 0.938 3.062 22 H -0.203 1.203 23 H -0.220 1.220 24 H -0.201 1.201 25 C 0.409 3.591 26 F -0.165 7.165 27 F -0.169 7.169 28 F -0.162 7.162 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.102 0.898 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.015 0.985 46 H 0.043 0.957 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.674 -17.880 10.750 22.997 hybrid contribution 0.758 -0.126 1.377 1.577 sum 10.432 -18.007 12.127 24.086 Atomic orbital electron populations 1.21923 0.91485 1.03697 1.04142 1.22099 0.99879 1.01554 0.89967 0.86824 1.21774 1.05147 1.00766 0.89457 1.20888 0.78915 0.85542 0.85102 1.90811 1.40811 1.26407 1.86245 1.48345 1.58982 1.21259 1.05181 1.22121 0.96278 0.81771 1.02043 1.21899 1.01112 0.98951 0.94614 1.21547 1.00256 0.95167 0.98401 1.21749 0.97778 0.96591 0.98823 1.21746 0.97767 0.91696 0.85426 0.92346 1.21216 0.96752 0.91132 0.85699 1.44371 1.19173 1.42311 1.28683 1.20838 0.91508 0.91037 0.97276 1.20107 1.02992 0.94398 1.30330 0.93100 1.27290 1.00936 0.92887 1.06176 1.70905 1.40160 1.22917 1.24262 0.82889 0.74774 0.75148 0.73437 1.20342 1.21961 1.20093 1.20468 0.75237 0.77569 0.85852 1.93182 1.30083 1.96430 1.96791 1.93173 1.88560 1.80937 1.54242 1.93172 1.88434 1.37748 1.96803 0.91217 0.91010 0.90597 0.85340 0.85346 0.89783 0.86736 0.87587 0.92228 0.91409 0.91324 0.94507 0.92407 0.94174 0.95229 0.93862 0.98477 0.95741 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.69 71.98 0.63 -2.71 16 2 C -0.12 -2.20 2.01 -10.79 -0.02 -2.22 16 3 H 0.11 2.42 7.95 -2.39 -0.02 2.40 16 4 C -0.13 -2.20 3.33 29.85 0.10 -2.10 16 5 C 0.51 13.71 7.33 87.66 0.64 14.35 16 6 O -0.56 -20.81 9.37 -3.03 -0.03 -20.84 16 7 N -0.60 -15.71 2.97 -795.02 -2.36 -18.07 16 8 C 0.10 1.53 6.33 86.36 0.55 2.08 16 9 C -0.13 -2.04 6.08 30.67 0.19 -1.85 16 10 C -0.12 -2.63 5.88 30.63 0.18 -2.45 16 11 C -0.11 -3.76 4.23 30.68 0.13 -3.63 16 12 C 0.14 4.87 3.19 44.98 0.14 5.01 16 13 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 14 C 0.18 8.16 3.64 86.38 0.31 8.48 16 15 N -0.62 -32.62 2.43 -726.93 -1.76 -34.39 16 16 C 0.14 7.00 9.09 127.77 1.16 8.16 16 17 C -0.35 -19.83 8.18 84.03 0.69 -19.14 16 18 H 0.05 2.89 6.92 -2.91 -0.02 2.87 16 19 C -0.08 -4.46 4.60 84.86 0.39 -4.06 16 20 N -0.94 -59.42 12.55 21.65 0.27 -59.15 16 21 Si 1.11 51.81 29.99 68.60 2.06 53.87 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 25 C 0.46 8.17 2.69 71.98 0.19 8.37 16 26 F -0.18 -3.22 16.71 44.97 0.75 -2.47 16 27 F -0.19 -3.80 16.80 44.97 0.76 -3.04 16 28 F -0.18 -3.06 16.37 44.97 0.74 -2.32 16 29 H 0.07 1.42 7.80 -2.39 -0.02 1.40 16 30 H 0.07 2.05 5.95 -2.38 -0.01 2.03 16 31 H 0.08 1.38 7.80 -2.39 -0.02 1.36 16 32 H 0.13 1.54 7.30 -2.39 -0.02 1.52 16 33 H 0.13 1.53 7.62 -2.39 -0.02 1.51 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.11 1.02 5.96 -2.39 -0.01 1.01 16 36 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 41 H 0.06 2.35 6.73 -2.38 -0.02 2.34 16 42 H 0.04 1.95 6.34 -2.38 -0.02 1.94 16 43 H 0.03 1.52 6.96 -2.39 -0.02 1.51 16 44 H 0.04 2.37 6.31 -2.39 -0.02 2.35 16 45 H 0.00 -0.16 8.07 -2.39 -0.02 -0.18 16 46 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.25 16.39 7.02 -92.71 -0.65 15.74 16 Total: -1.00 -72.43 367.65 6.79 -65.64 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 1.09 Total: 12.49 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 5.28 Total: 8.28 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -3.86 Total: -111.61 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.03 Total: -20.84 kcal Atomic # 9 Polarization: -10.08 SS G_CDS: 2.24 Total: -7.83 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.06 Total: 53.87 kcal Total: -72.43 6.79 -65.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001750928626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.403 kcal (2) G-P(sol) polarization free energy of solvation -72.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds