Wall clock time and date at job start Sat Apr 11 2020 04:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46667 * 2 1 4 4 C 1.53007 * 109.46577 * 119.99466 * 2 1 3 5 5 C 1.50696 * 109.47261 * 295.09727 * 4 2 1 6 6 O 1.21282 * 119.99927 * 353.45637 * 5 4 2 7 7 N 1.34778 * 119.99774 * 173.46101 * 5 4 2 8 8 C 1.46929 * 120.63162 * 5.10200 * 7 5 4 9 9 C 1.53189 * 108.77593 * 126.37381 * 8 7 5 10 10 C 1.53038 * 109.31538 * 54.63184 * 9 8 7 11 11 C 1.53077 * 109.65995 * 298.70180 * 10 9 8 12 12 C 1.46926 * 120.63083 * 185.08260 * 7 5 4 13 13 H 1.09005 * 109.58886 * 113.69530 * 12 7 5 14 14 C 1.53002 * 109.58348 * 353.41496 * 12 7 5 15 15 N 1.46503 * 109.46844 * 179.80625 * 14 12 7 16 16 C 1.46495 * 119.99969 * 275.57347 * 15 14 12 17 17 C 1.36941 * 120.00015 * 95.57979 * 15 14 12 18 18 H 1.08002 * 119.99698 * 325.34834 * 17 15 14 19 19 C 1.38809 * 119.99961 * 145.35444 * 17 15 14 20 20 N 1.31612 * 120.00375 * 335.19886 * 19 17 15 21 21 Si 1.86803 * 119.99543 * 155.20172 * 19 17 15 22 22 H 1.48500 * 109.47305 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47010 * 120.00042 * 21 19 17 24 24 H 1.48500 * 109.47173 * 239.99419 * 21 19 17 25 25 C 1.52993 * 109.47479 * 239.99745 * 2 1 3 26 26 F 1.39902 * 109.47055 * 300.00054 * 25 2 1 27 27 F 1.39899 * 109.47136 * 59.99639 * 25 2 1 28 28 F 1.39899 * 109.47446 * 180.02562 * 25 2 1 29 29 H 1.08993 * 109.47469 * 305.85139 * 1 2 3 30 30 H 1.09005 * 109.46989 * 65.85438 * 1 2 3 31 31 H 1.09006 * 109.47241 * 185.84639 * 1 2 3 32 32 H 1.09000 * 109.46548 * 175.09393 * 4 2 1 33 33 H 1.08996 * 109.47075 * 55.10307 * 4 2 1 34 34 H 1.09002 * 109.58378 * 246.16045 * 8 7 5 35 35 H 1.08996 * 109.58392 * 6.44175 * 8 7 5 36 36 H 1.08995 * 109.49736 * 174.58587 * 9 8 7 37 37 H 1.09003 * 109.49263 * 294.65040 * 9 8 7 38 38 H 1.09005 * 109.45655 * 58.65580 * 10 9 8 39 39 H 1.08994 * 109.46237 * 178.62926 * 10 9 8 40 40 H 1.08994 * 109.39337 * 301.28002 * 11 10 9 41 41 H 1.08997 * 109.62054 * 181.16725 * 11 10 9 42 42 H 1.09001 * 109.47312 * 59.80927 * 14 12 7 43 43 H 1.09000 * 109.47220 * 299.80732 * 14 12 7 44 44 H 1.09009 * 109.47324 * 180.70146 * 16 15 14 45 45 H 1.08998 * 109.47511 * 300.69701 * 16 15 14 46 46 H 1.08998 * 109.47412 * 60.70119 * 16 15 14 47 47 H 0.97001 * 119.99895 * 357.66176 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6391 0.0560 2.4767 6 8 1.1131 1.1427 2.3614 7 7 1.8653 -0.4566 3.7025 8 6 2.6008 -1.7185 3.8622 9 6 3.7645 -1.4916 4.8324 10 6 3.2263 -0.9079 6.1407 11 6 2.5567 0.4409 5.8658 12 6 1.3816 0.2360 4.9046 13 1 0.6136 -0.3667 5.3895 14 6 0.7963 1.5944 4.5131 15 7 0.3105 2.2808 5.7128 16 6 -1.0310 1.9953 6.2275 17 6 1.1105 3.1895 6.3529 18 1 2.1791 3.0373 6.3886 19 6 0.5478 4.3060 6.9560 20 7 -0.6106 4.7678 6.5351 21 14 1.4348 5.1530 8.3649 22 1 2.7086 4.4434 8.6460 23 1 1.7238 6.5613 7.9926 24 1 0.5767 5.1277 9.5767 25 6 2.0401 -0.7213 -1.2491 26 9 1.5738 -2.0403 -1.2491 27 9 1.5737 -0.0619 -2.3915 28 9 3.4391 -0.7218 -1.2488 29 1 -0.3634 0.6018 0.8329 30 1 -0.3633 0.4204 -0.9378 31 1 -0.3634 -1.0224 0.1047 32 1 3.1263 -0.7979 1.2065 33 1 1.6067 -1.7203 1.2944 34 1 1.9341 -2.4818 4.2635 35 1 2.9862 -2.0417 2.8953 36 1 4.2601 -2.4411 5.0343 37 1 4.4772 -0.7962 4.3891 38 1 2.4955 -1.5930 6.5705 39 1 4.0492 -0.7682 6.8416 40 1 3.2810 1.1195 5.4154 41 1 2.1919 0.8658 6.8009 42 1 -0.0309 1.4472 3.8187 43 1 1.5679 2.1987 4.0360 44 1 -1.2186 2.6053 7.1112 45 1 -1.7711 2.2278 5.4618 46 1 -1.1015 0.9404 6.4925 47 1 -1.0549 4.3487 5.7815 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001750928641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:08 Heat of formation + Delta-G solvation = -187.594440 kcal Electronic energy + Delta-G solvation = -31492.309203 eV Core-core repulsion = 26873.978456 eV Total energy + Delta-G solvation = -4618.330747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -51.13495 -48.62606 -48.58064 -41.68027 -38.81122 -37.51603 -36.14861 -33.98692 -33.75728 -31.75985 -29.33696 -28.16851 -27.55627 -27.16445 -25.57656 -24.06068 -22.84985 -22.06829 -21.62214 -20.12778 -19.47193 -19.26095 -19.19570 -18.53271 -17.31894 -17.09252 -16.85197 -16.16658 -15.84429 -15.70605 -15.54708 -15.42385 -15.33740 -15.05111 -15.03551 -14.83427 -14.76578 -14.73121 -14.55026 -14.52387 -14.28151 -13.95355 -13.89641 -13.29099 -13.18346 -12.99762 -12.79680 -12.57757 -12.45826 -12.35819 -12.27633 -12.25377 -12.02518 -11.87950 -11.85972 -11.58471 -11.46445 -11.35583 -10.42753 -10.25554 -9.49884 -8.82528 -8.22661 -5.44402 1.56532 1.59876 1.64317 1.65595 1.80891 2.01513 2.66164 2.76363 2.95729 3.04265 3.25598 3.52594 3.62808 3.75994 3.83166 3.90623 3.94548 4.04786 4.13921 4.20235 4.34829 4.43549 4.47948 4.50015 4.61751 4.64574 4.69200 4.72367 4.82107 4.86988 4.89664 4.99612 5.04834 5.10686 5.13564 5.16642 5.22437 5.32606 5.36480 5.50014 5.71605 5.93853 6.41630 6.48906 7.08939 7.25762 7.81503 8.26194 9.00208 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.015086 B = 0.003312 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.631749 B = 8451.467958 C = 9462.340219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 H 0.112 0.888 4 C -0.132 4.132 5 C 0.507 3.493 6 O -0.565 6.565 7 N -0.605 5.605 8 C 0.100 3.900 9 C -0.128 4.128 10 C -0.116 4.116 11 C -0.111 4.111 12 C 0.139 3.861 13 H 0.060 0.940 14 C 0.178 3.822 15 N -0.620 5.620 16 C 0.139 3.861 17 C -0.348 4.348 18 H 0.048 0.952 19 C -0.076 4.076 20 N -0.942 5.942 21 Si 1.118 2.882 22 H -0.271 1.271 23 H -0.293 1.293 24 H -0.285 1.285 25 C 0.463 3.537 26 F -0.179 7.179 27 F -0.188 7.188 28 F -0.184 7.184 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.034 0.966 41 H 0.056 0.944 42 H 0.039 0.961 43 H 0.029 0.971 44 H 0.041 0.959 45 H -0.002 1.002 46 H 0.025 0.975 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.709 -20.442 -11.581 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.137 4.137 3 H 0.130 0.870 4 C -0.171 4.171 5 C 0.296 3.704 6 O -0.444 6.444 7 N -0.338 5.338 8 C -0.022 4.022 9 C -0.166 4.166 10 C -0.153 4.153 11 C -0.149 4.149 12 C 0.034 3.966 13 H 0.078 0.922 14 C 0.052 3.948 15 N -0.345 5.345 16 C -0.006 4.006 17 C -0.478 4.478 18 H 0.066 0.934 19 C -0.272 4.272 20 N -0.583 5.583 21 Si 0.943 3.057 22 H -0.196 1.196 23 H -0.220 1.220 24 H -0.211 1.211 25 C 0.409 3.591 26 F -0.161 7.161 27 F -0.169 7.169 28 F -0.166 7.166 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.060 0.940 45 H 0.016 0.984 46 H 0.043 0.957 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.360 -18.680 -10.587 23.042 hybrid contribution -0.168 -0.650 -1.308 1.470 sum 8.192 -19.330 -11.895 24.130 Atomic orbital electron populations 1.21887 0.91251 1.03939 1.03909 1.22109 1.00054 1.01532 0.89997 0.87020 1.21782 1.05043 1.00849 0.89452 1.20890 0.78369 0.86035 0.85115 1.90824 1.44709 1.22536 1.86328 1.48343 1.55667 1.24898 1.04893 1.22118 0.93714 0.84120 1.02225 1.21902 0.97344 1.02590 0.94787 1.21545 1.00225 0.95222 0.98343 1.21730 0.96338 0.97879 0.98961 1.21737 0.95367 0.94068 0.85432 0.92170 1.21210 0.96816 0.91114 0.85632 1.44363 1.14527 1.46733 1.28927 1.20838 0.86041 0.96991 0.96764 1.20118 0.91575 1.02599 1.33512 0.93397 1.27321 0.99549 0.95017 1.05349 1.70844 1.20295 1.39821 1.27376 0.82823 0.74699 0.74717 0.73462 1.19606 1.22048 1.21107 1.20457 0.75218 0.77593 0.85837 1.93174 1.88416 1.37667 1.96804 1.93171 1.88540 1.80955 1.54232 1.93181 1.30174 1.96432 1.96791 0.91308 0.91042 0.90293 0.85592 0.85125 0.89641 0.86772 0.87534 0.92362 0.91275 0.91378 0.94676 0.92491 0.94281 0.95293 0.93995 0.98353 0.95679 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.62 71.98 0.62 -2.50 16 2 C -0.12 -2.24 2.01 -10.79 -0.02 -2.26 16 3 H 0.11 2.48 7.86 -2.39 -0.02 2.46 16 4 C -0.13 -2.22 3.29 29.85 0.10 -2.12 16 5 C 0.51 13.80 7.25 87.66 0.64 14.44 16 6 O -0.56 -21.07 9.62 -3.04 -0.03 -21.10 16 7 N -0.60 -15.75 2.97 -795.02 -2.36 -18.12 16 8 C 0.10 1.54 6.28 86.36 0.54 2.08 16 9 C -0.13 -2.07 6.08 30.67 0.19 -1.88 16 10 C -0.12 -2.63 5.88 30.63 0.18 -2.45 16 11 C -0.11 -3.77 4.30 30.68 0.13 -3.64 16 12 C 0.14 4.88 3.19 44.98 0.14 5.02 16 13 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 14 C 0.18 8.20 3.63 86.38 0.31 8.52 16 15 N -0.62 -32.66 2.36 -726.93 -1.72 -34.37 16 16 C 0.14 6.97 9.09 127.77 1.16 8.13 16 17 C -0.35 -19.93 8.23 84.03 0.69 -19.24 16 18 H 0.05 2.76 7.08 -2.91 -0.02 2.74 16 19 C -0.08 -4.43 4.62 84.86 0.39 -4.04 16 20 N -0.94 -59.55 12.61 21.65 0.27 -59.27 16 21 Si 1.12 52.24 29.99 68.60 2.06 54.29 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 25 C 0.46 8.21 2.69 71.98 0.19 8.40 16 26 F -0.18 -2.98 16.48 44.97 0.74 -2.24 16 27 F -0.19 -3.80 16.70 44.97 0.75 -3.05 16 28 F -0.18 -3.33 16.71 44.97 0.75 -2.58 16 29 H 0.07 1.85 6.32 -2.39 -0.02 1.84 16 30 H 0.07 1.37 7.64 -2.38 -0.02 1.35 16 31 H 0.08 1.33 7.97 -2.38 -0.02 1.31 16 32 H 0.13 1.60 7.32 -2.39 -0.02 1.58 16 33 H 0.13 1.49 7.64 -2.39 -0.02 1.47 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 35 H 0.11 1.03 6.01 -2.39 -0.01 1.01 16 36 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 2.33 6.85 -2.39 -0.02 2.31 16 42 H 0.04 1.90 6.39 -2.39 -0.02 1.88 16 43 H 0.03 1.51 6.91 -2.39 -0.02 1.49 16 44 H 0.04 2.28 6.36 -2.38 -0.02 2.27 16 45 H 0.00 -0.10 8.07 -2.39 -0.02 -0.11 16 46 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.25 16.45 6.98 -92.71 -0.65 15.81 16 Total: -1.00 -72.90 368.46 6.83 -66.07 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 1.09 Total: 11.90 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 5.27 Total: 8.47 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -3.81 Total: -111.76 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.03 Total: -21.10 kcal Atomic # 9 Polarization: -10.11 SS G_CDS: 2.24 Total: -7.87 kcal Atomic # 14 Polarization: 52.24 SS G_CDS: 2.06 Total: 54.29 kcal Total: -72.90 6.83 -66.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001750928641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.524 kcal (2) G-P(sol) polarization free energy of solvation -72.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds