Wall clock time and date at job start Sat Apr 11 2020 04:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99592 * 2 1 4 4 C 1.50698 * 109.47119 * 180.02562 * 3 2 1 5 5 C 1.35130 * 125.62027 * 89.99249 * 4 3 2 6 6 C 1.40368 * 107.11425 * 180.02562 * 5 4 3 7 7 C 1.36552 * 106.70854 * 0.02562 * 6 5 4 8 8 C 1.46657 * 125.98714 * 179.97438 * 7 6 5 9 9 O 1.21692 * 119.99976 * 352.41330 * 8 7 6 10 10 N 1.34772 * 120.00040 * 172.41065 * 8 7 6 11 11 C 1.46931 * 120.62937 * 352.66090 * 10 8 7 12 12 C 1.53193 * 108.76965 * 233.62655 * 11 10 8 13 13 C 1.53036 * 109.31359 * 305.36101 * 12 11 10 14 14 C 1.53006 * 109.46136 * 181.38863 * 13 12 11 15 15 H 1.09003 * 109.46533 * 300.00365 * 14 13 12 16 16 C 1.53001 * 109.46763 * 60.00037 * 14 13 12 17 17 N 1.46494 * 109.47321 * 180.02562 * 14 13 12 18 18 C 1.36940 * 119.99933 * 154.72074 * 17 14 13 19 19 H 1.07996 * 120.00123 * 0.28473 * 18 17 14 20 20 C 1.38814 * 119.99786 * 180.27507 * 18 17 14 21 21 N 1.31614 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99802 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46909 * 90.00421 * 22 20 18 24 24 H 1.48497 * 109.47270 * 209.99865 * 22 20 18 25 25 H 1.48496 * 109.47250 * 330.00475 * 22 20 18 26 26 C 1.53041 * 109.53620 * 61.36843 * 13 12 11 27 27 C 1.46921 * 120.63300 * 172.67572 * 10 8 7 28 28 O 1.33937 * 125.60965 * 270.32600 * 4 3 2 29 29 H 1.09006 * 109.46714 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46779 * 299.99696 * 1 2 3 31 31 H 1.08998 * 109.47485 * 60.00010 * 1 2 3 32 32 H 1.08995 * 109.47215 * 59.99942 * 3 2 1 33 33 H 1.09004 * 109.47057 * 300.00024 * 3 2 1 34 34 H 1.08001 * 126.44262 * 0.04423 * 5 4 3 35 35 H 1.08000 * 126.64380 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.58756 * 113.83761 * 11 10 8 37 37 H 1.09001 * 109.70253 * 353.48065 * 11 10 8 38 38 H 1.09010 * 109.49423 * 185.41126 * 12 11 10 39 39 H 1.08999 * 109.52496 * 65.33285 * 12 11 10 40 40 H 1.08998 * 109.46297 * 301.36008 * 13 12 11 41 41 H 1.09001 * 109.47510 * 300.00067 * 16 14 13 42 42 H 1.08997 * 109.47056 * 60.00187 * 16 14 13 43 43 H 1.09002 * 109.46971 * 180.02562 * 16 14 13 44 44 H 0.96997 * 120.00314 * 335.00599 * 17 14 13 45 45 H 0.97006 * 120.00099 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.49861 * 58.58816 * 26 13 12 47 47 H 1.09004 * 109.49687 * 178.68304 * 26 13 12 48 48 H 1.09006 * 109.58757 * 246.16564 * 27 10 8 49 49 H 1.09005 * 109.58155 * 6.44193 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2966 1.1246 -1.0994 6 6 5.6237 1.0189 -0.6545 7 6 5.5815 1.0213 0.7104 8 6 6.7372 0.9284 1.6085 9 8 7.8433 0.7009 1.1551 10 7 6.5742 1.0951 2.9359 11 6 5.2809 1.5275 3.4828 12 6 5.5053 2.7619 4.3619 13 6 6.5612 2.4427 5.4226 14 6 6.7630 3.6623 6.3242 15 1 7.0963 4.5078 5.7224 16 6 5.4411 4.0139 7.0098 17 7 7.7741 3.3573 7.3394 18 6 8.4976 4.3697 7.9111 19 1 8.3195 5.3934 7.6169 20 6 9.4597 4.0801 8.8688 21 7 9.6770 2.8324 9.2271 22 14 10.4461 5.4611 9.6492 23 1 9.7419 5.9480 10.8626 24 1 11.7911 4.9570 10.0263 25 1 10.5895 6.5763 8.6792 26 6 7.8839 2.0902 4.7382 27 6 7.6865 0.8483 3.8635 28 8 4.2899 1.1187 1.0879 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.9646 1.1515 -2.1268 35 1 6.5070 0.9493 -1.2720 36 1 4.8510 0.7251 4.0824 37 1 4.6023 1.7781 2.6674 38 1 4.5700 3.0356 4.8503 39 1 5.8494 3.5914 3.7441 40 1 6.2274 1.5975 6.0245 41 1 4.6890 4.2411 6.2543 42 1 5.1078 3.1684 7.6115 43 1 5.5847 4.8830 7.6518 44 1 7.9341 2.4378 7.6036 45 1 10.3491 2.6300 9.8967 46 1 8.2058 2.9256 4.1166 47 1 8.6417 1.8857 5.4946 48 1 7.4528 -0.0096 4.4942 49 1 8.5966 0.6487 3.2978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753277768.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:12 Heat of formation + Delta-G solvation = -46.316929 kcal Electronic energy + Delta-G solvation = -29501.756054 eV Core-core repulsion = 25431.408300 eV Total energy + Delta-G solvation = -4070.347754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.06378 -40.00548 -38.33787 -37.92969 -35.50222 -33.54335 -32.84554 -31.85551 -30.94435 -30.71700 -28.26291 -27.84451 -26.26470 -25.14543 -23.85527 -23.07549 -22.24049 -21.84421 -20.80728 -19.96053 -19.43007 -17.79027 -17.35628 -17.05415 -16.69879 -16.32848 -16.27678 -15.96940 -15.08733 -14.76344 -14.56839 -14.22367 -13.94921 -13.86716 -13.75985 -13.46267 -13.37618 -13.23702 -13.10771 -12.68937 -12.52821 -12.35088 -12.16679 -11.97973 -11.95831 -11.59109 -11.12523 -10.99277 -10.86348 -10.73764 -10.41316 -10.34465 -10.28364 -10.18535 -10.11314 -10.09641 -9.76083 -9.55930 -8.99783 -8.88395 -8.57284 -6.92886 -5.74773 -3.02632 0.74009 1.91684 2.23874 2.91279 3.06430 3.44370 3.48013 3.49953 3.51315 4.17884 4.37856 4.55279 4.60185 4.68035 4.71791 4.84678 4.88025 4.93779 5.03726 5.10954 5.19678 5.27580 5.29130 5.40361 5.44026 5.51979 5.56843 5.66991 5.74602 5.83146 5.94141 6.00077 6.05079 6.07282 6.12364 6.17184 6.34605 6.37677 6.48639 6.49810 6.56364 6.63227 6.68519 6.83981 6.95783 7.13566 7.28613 7.72293 7.94677 8.44169 9.55354 10.13619 10.48339 11.47899 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019370 B = 0.002367 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.171575 B =11828.568857 C =12740.041551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.140 3.860 4 C -0.001 4.001 5 C -0.190 4.190 6 C -0.126 4.126 7 C -0.058 4.058 8 C 0.598 3.402 9 O -0.524 6.524 10 N -0.596 5.596 11 C 0.097 3.903 12 C -0.127 4.127 13 C -0.091 4.091 14 C 0.178 3.822 15 H 0.045 0.955 16 C -0.166 4.166 17 N -0.723 5.723 18 C -0.234 4.234 19 H 0.068 0.932 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.904 3.096 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 C -0.121 4.121 27 C 0.110 3.890 28 O -0.148 6.148 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.037 0.963 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.071 0.929 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.175 -4.650 -20.920 28.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.063 3.937 4 C -0.052 4.052 5 C -0.209 4.209 6 C -0.147 4.147 7 C -0.110 4.110 8 C 0.386 3.614 9 O -0.402 6.402 10 N -0.328 5.328 11 C -0.025 4.025 12 C -0.166 4.166 13 C -0.110 4.110 14 C 0.068 3.932 15 H 0.063 0.937 16 C -0.226 4.226 17 N -0.364 5.364 18 C -0.366 4.366 19 H 0.086 0.914 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.219 1.219 24 H -0.218 1.218 25 H -0.209 1.209 26 C -0.159 4.159 27 C -0.011 4.011 28 O -0.045 6.045 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.180 0.820 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.112 0.888 48 H 0.089 0.911 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.463 -4.774 -20.759 28.188 hybrid contribution 0.340 0.699 0.529 0.940 sum -18.123 -4.075 -20.229 27.464 Atomic orbital electron populations 1.22821 0.79910 1.03423 1.00397 1.87996 1.20383 1.26525 1.95530 1.20734 0.84163 0.86016 1.02741 1.22346 0.92903 1.05052 0.84945 1.21608 0.92385 1.07261 0.99692 1.21961 0.98598 1.01163 0.92941 1.22227 0.82034 1.12010 0.94703 1.16693 0.85704 0.77715 0.81336 1.90871 1.23328 1.50490 1.75507 1.48082 1.13810 1.65565 1.05305 1.22207 0.84131 0.97473 0.98698 1.22023 1.00362 0.96886 0.97319 1.21402 0.94270 0.99695 0.95635 1.20208 0.89206 0.94097 0.89663 0.93744 1.22494 0.98613 1.01428 1.00038 1.42406 1.41691 1.07167 1.45119 1.19215 1.12701 0.88581 1.16054 0.91362 1.24712 1.00018 0.96169 1.00142 1.69650 1.36791 1.16496 1.35253 0.86228 0.79582 0.81307 0.79312 1.21861 1.21838 1.20855 1.21889 0.98716 0.96513 0.98828 1.21850 0.89383 0.98626 0.91216 1.84228 1.16464 1.70080 1.33679 0.89088 0.93509 0.93634 0.90928 0.89616 0.82537 0.82003 0.91065 0.88414 0.90202 0.91620 0.91309 0.94374 0.93584 0.93033 0.78316 0.93588 0.91887 0.88766 0.91103 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -3.19 10.69 -35.23 -0.38 -3.57 16 3 C 0.14 0.93 6.46 36.00 0.23 1.16 16 4 C 0.00 -0.01 6.94 -35.41 -0.25 -0.25 16 5 C -0.19 -1.74 10.77 -39.89 -0.43 -2.17 16 6 C -0.13 -1.41 10.63 -39.39 -0.42 -1.83 16 7 C -0.06 -0.74 6.76 -36.79 -0.25 -0.99 16 8 C 0.60 8.97 7.65 -12.86 -0.10 8.87 16 9 O -0.52 -9.23 16.30 5.20 0.08 -9.15 16 10 N -0.60 -8.31 2.97 -174.32 -0.52 -8.83 16 11 C 0.10 1.15 6.10 -3.71 -0.02 1.13 16 12 C -0.13 -1.61 5.04 -26.61 -0.13 -1.75 16 13 C -0.09 -1.41 1.79 -90.58 -0.16 -1.57 16 14 C 0.18 3.39 2.47 -67.93 -0.17 3.22 16 15 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 16 C -0.17 -2.88 9.14 37.16 0.34 -2.54 16 17 N -0.72 -17.43 4.41 -53.42 -0.24 -17.67 16 18 C -0.23 -6.39 9.93 -15.06 -0.15 -6.54 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 22 Si 0.90 22.42 29.55 -169.99 -5.02 17.39 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C -0.12 -1.97 5.22 -26.62 -0.14 -2.11 16 27 C 0.11 1.61 6.44 -3.72 -0.02 1.58 16 28 O -0.15 -1.70 7.26 4.97 0.04 -1.67 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.09 4.26 -52.94 -0.23 0.87 16 38 H 0.08 0.91 6.36 -51.92 -0.33 0.58 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.38 9.83 7.58 -40.82 -0.31 9.52 16 45 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.09 1.77 7.40 -51.93 -0.38 1.39 16 48 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.09 1.42 7.00 -51.93 -0.36 1.05 16 LS Contribution 394.46 15.07 5.94 5.94 Total: -1.00 -32.81 394.46 -7.84 -40.65 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -7.83 Total: 7.07 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -0.65 Total: -3.04 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.03 Total: -53.64 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.26 Total: -14.38 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.81 -7.84 -40.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753277768.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.667 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds