Wall clock time and date at job start Sat Apr 11 2020 04:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99592 * 2 1 4 4 C 1.50698 * 109.47119 * 180.02562 * 3 2 1 5 5 C 1.35130 * 125.62027 * 89.99249 * 4 3 2 6 6 C 1.40368 * 107.11425 * 180.02562 * 5 4 3 7 7 C 1.36552 * 106.70854 * 0.02562 * 6 5 4 8 8 C 1.46657 * 125.98714 * 179.97438 * 7 6 5 9 9 O 1.21692 * 119.99976 * 352.41330 * 8 7 6 10 10 N 1.34772 * 120.00040 * 172.41065 * 8 7 6 11 11 C 1.46931 * 120.62937 * 352.66090 * 10 8 7 12 12 C 1.53193 * 108.76965 * 233.62655 * 11 10 8 13 13 C 1.53036 * 109.31359 * 305.36101 * 12 11 10 14 14 C 1.53006 * 109.46136 * 181.38863 * 13 12 11 15 15 H 1.09003 * 109.46533 * 300.00365 * 14 13 12 16 16 C 1.53001 * 109.46763 * 60.00037 * 14 13 12 17 17 N 1.46494 * 109.47321 * 180.02562 * 14 13 12 18 18 C 1.36940 * 119.99933 * 154.72074 * 17 14 13 19 19 H 1.07996 * 120.00123 * 0.28473 * 18 17 14 20 20 C 1.38814 * 119.99786 * 180.27507 * 18 17 14 21 21 N 1.31614 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99802 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46909 * 90.00421 * 22 20 18 24 24 H 1.48497 * 109.47270 * 209.99865 * 22 20 18 25 25 H 1.48496 * 109.47250 * 330.00475 * 22 20 18 26 26 C 1.53041 * 109.53620 * 61.36843 * 13 12 11 27 27 C 1.46921 * 120.63300 * 172.67572 * 10 8 7 28 28 O 1.33937 * 125.60965 * 270.32600 * 4 3 2 29 29 H 1.09006 * 109.46714 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46779 * 299.99696 * 1 2 3 31 31 H 1.08998 * 109.47485 * 60.00010 * 1 2 3 32 32 H 1.08995 * 109.47215 * 59.99942 * 3 2 1 33 33 H 1.09004 * 109.47057 * 300.00024 * 3 2 1 34 34 H 1.08001 * 126.44262 * 0.04423 * 5 4 3 35 35 H 1.08000 * 126.64380 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.58756 * 113.83761 * 11 10 8 37 37 H 1.09001 * 109.70253 * 353.48065 * 11 10 8 38 38 H 1.09010 * 109.49423 * 185.41126 * 12 11 10 39 39 H 1.08999 * 109.52496 * 65.33285 * 12 11 10 40 40 H 1.08998 * 109.46297 * 301.36008 * 13 12 11 41 41 H 1.09001 * 109.47510 * 300.00067 * 16 14 13 42 42 H 1.08997 * 109.47056 * 60.00187 * 16 14 13 43 43 H 1.09002 * 109.46971 * 180.02562 * 16 14 13 44 44 H 0.96997 * 120.00314 * 335.00599 * 17 14 13 45 45 H 0.97006 * 120.00099 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.49861 * 58.58816 * 26 13 12 47 47 H 1.09004 * 109.49687 * 178.68304 * 26 13 12 48 48 H 1.09006 * 109.58757 * 246.16564 * 27 10 8 49 49 H 1.09005 * 109.58155 * 6.44193 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2966 1.1246 -1.0994 6 6 5.6237 1.0189 -0.6545 7 6 5.5815 1.0213 0.7104 8 6 6.7372 0.9284 1.6085 9 8 7.8433 0.7009 1.1551 10 7 6.5742 1.0951 2.9359 11 6 5.2809 1.5275 3.4828 12 6 5.5053 2.7619 4.3619 13 6 6.5612 2.4427 5.4226 14 6 6.7630 3.6623 6.3242 15 1 7.0963 4.5078 5.7224 16 6 5.4411 4.0139 7.0098 17 7 7.7741 3.3573 7.3394 18 6 8.4976 4.3697 7.9111 19 1 8.3195 5.3934 7.6169 20 6 9.4597 4.0801 8.8688 21 7 9.6770 2.8324 9.2271 22 14 10.4461 5.4611 9.6492 23 1 9.7419 5.9480 10.8626 24 1 11.7911 4.9570 10.0263 25 1 10.5895 6.5763 8.6792 26 6 7.8839 2.0902 4.7382 27 6 7.6865 0.8483 3.8635 28 8 4.2899 1.1187 1.0879 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.9646 1.1515 -2.1268 35 1 6.5070 0.9493 -1.2720 36 1 4.8510 0.7251 4.0824 37 1 4.6023 1.7781 2.6674 38 1 4.5700 3.0356 4.8503 39 1 5.8494 3.5914 3.7441 40 1 6.2274 1.5975 6.0245 41 1 4.6890 4.2411 6.2543 42 1 5.1078 3.1684 7.6115 43 1 5.5847 4.8830 7.6518 44 1 7.9341 2.4378 7.6036 45 1 10.3491 2.6300 9.8967 46 1 8.2058 2.9256 4.1166 47 1 8.6417 1.8857 5.4946 48 1 7.4528 -0.0096 4.4942 49 1 8.5966 0.6487 3.2978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753277768.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:11 Heat of formation + Delta-G solvation = -67.191180 kcal Electronic energy + Delta-G solvation = -29502.661230 eV Core-core repulsion = 25431.408300 eV Total energy + Delta-G solvation = -4071.252930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.87497 -41.15562 -39.25692 -38.79070 -36.99575 -34.74016 -34.21191 -32.90907 -32.30078 -31.85864 -29.93049 -28.51755 -26.99159 -26.23643 -25.55954 -24.21295 -23.36091 -22.70348 -21.85020 -21.27924 -20.67473 -19.23664 -18.58439 -17.99699 -17.60076 -17.10577 -17.00725 -16.76429 -16.59733 -16.01554 -15.69478 -15.48865 -15.43098 -15.12385 -14.81785 -14.64048 -14.44657 -14.18830 -14.10978 -13.92376 -13.59610 -13.54799 -13.30235 -13.00373 -12.87635 -12.84287 -12.73622 -12.34311 -12.31291 -12.20646 -12.13182 -11.87228 -11.55951 -11.45177 -11.30372 -11.20189 -11.01608 -10.88065 -10.70654 -9.96343 -9.58859 -8.94972 -7.91284 -5.17502 -0.14444 1.14803 1.39476 1.46675 1.47462 1.55599 1.89853 2.03274 2.57454 2.95782 3.37921 3.42404 3.70154 3.75938 3.79884 3.87172 3.88913 4.08359 4.17206 4.23322 4.31204 4.32664 4.37848 4.54373 4.54937 4.56866 4.58840 4.62754 4.67775 4.75599 4.82306 4.83930 4.90727 4.94019 4.97147 5.00266 5.08533 5.13998 5.20391 5.30200 5.33482 5.46990 5.50981 5.59735 5.68211 5.78589 6.11609 6.21157 6.31718 6.83025 7.37869 8.16543 8.38896 9.32036 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019370 B = 0.002367 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.171575 B =11828.568857 C =12740.041551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.137 3.863 4 C 0.004 3.996 5 C -0.191 4.191 6 C -0.123 4.123 7 C -0.089 4.089 8 C 0.595 3.405 9 O -0.563 6.563 10 N -0.597 5.597 11 C 0.099 3.901 12 C -0.118 4.118 13 C -0.080 4.080 14 C 0.172 3.828 15 H 0.033 0.967 16 C -0.156 4.156 17 N -0.733 5.733 18 C -0.230 4.230 19 H 0.070 0.930 20 C -0.077 4.077 21 N -0.968 5.968 22 Si 0.965 3.035 23 H -0.289 1.289 24 H -0.298 1.298 25 H -0.273 1.273 26 C -0.112 4.112 27 C 0.118 3.882 28 O -0.154 6.154 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.187 0.813 35 H 0.166 0.834 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.030 0.970 44 H 0.373 0.627 45 H 0.249 0.751 46 H 0.048 0.952 47 H 0.062 0.938 48 H 0.083 0.917 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.330 -3.914 -22.555 31.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.061 3.939 4 C -0.048 4.048 5 C -0.210 4.210 6 C -0.144 4.144 7 C -0.140 4.140 8 C 0.384 3.616 9 O -0.444 6.444 10 N -0.328 5.328 11 C -0.022 4.022 12 C -0.156 4.156 13 C -0.100 4.100 14 C 0.064 3.936 15 H 0.051 0.949 16 C -0.215 4.215 17 N -0.373 5.373 18 C -0.362 4.362 19 H 0.088 0.912 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.795 3.205 23 H -0.216 1.216 24 H -0.225 1.225 25 H -0.198 1.198 26 C -0.151 4.151 27 C -0.004 4.004 28 O -0.051 6.051 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.135 0.865 34 H 0.204 0.796 35 H 0.183 0.817 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.205 0.795 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.102 0.898 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.681 -4.004 -22.415 31.441 hybrid contribution 1.191 0.476 0.917 1.577 sum -20.490 -3.528 -21.499 29.908 Atomic orbital electron populations 1.22996 0.78170 1.04125 1.01700 1.87939 1.22318 1.27454 1.95835 1.21014 0.81980 0.85910 1.04947 1.23095 0.94278 1.02967 0.84444 1.21951 0.91129 1.06747 1.01173 1.22237 0.99933 0.99673 0.92522 1.21820 0.82184 1.15279 0.94737 1.16983 0.86006 0.76965 0.81641 1.90836 1.25006 1.52376 1.76212 1.48145 1.14203 1.65333 1.05076 1.22335 0.83303 0.97433 0.99104 1.21962 1.00074 0.97176 0.96373 1.21283 0.94745 0.98106 0.95840 1.20447 0.88839 0.95263 0.89013 0.94866 1.22341 0.98250 1.00412 1.00534 1.42586 1.42688 1.06028 1.45994 1.19547 1.12166 0.89325 1.15174 0.91175 1.25450 1.01744 0.98214 1.01522 1.69798 1.37688 1.18255 1.36189 0.85250 0.77732 0.78979 0.78500 1.21587 1.22485 1.19793 1.21720 0.98509 0.96827 0.98008 1.21664 0.89633 0.98034 0.91066 1.84162 1.15926 1.70400 1.34646 0.88821 0.92629 0.91874 0.89576 0.86545 0.79587 0.81683 0.89674 0.87054 0.87763 0.91986 0.91044 0.90386 0.93673 0.95098 0.79520 0.94254 0.93342 0.91890 0.89837 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.41 16 2 O -0.42 -5.68 10.69 -148.98 -1.59 -7.27 16 3 C 0.14 1.32 6.46 71.24 0.46 1.78 16 4 C 0.00 0.06 6.94 24.97 0.17 0.23 16 5 C -0.19 -2.98 10.77 22.07 0.24 -2.74 16 6 C -0.12 -2.61 10.63 22.39 0.24 -2.37 16 7 C -0.09 -2.21 6.76 24.08 0.16 -2.04 16 8 C 0.59 17.96 7.65 86.44 0.66 18.62 16 9 O -0.56 -20.54 16.30 -4.32 -0.07 -20.61 16 10 N -0.60 -16.42 2.97 -823.64 -2.45 -18.87 16 11 C 0.10 2.15 6.10 86.36 0.53 2.68 16 12 C -0.12 -2.69 5.04 30.67 0.15 -2.54 16 13 C -0.08 -2.44 1.79 -10.77 -0.02 -2.46 16 14 C 0.17 6.48 2.47 45.00 0.11 6.59 16 15 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 16 C -0.16 -5.12 9.14 71.98 0.66 -4.46 16 17 N -0.73 -35.97 4.41 -322.94 -1.42 -37.40 16 18 C -0.23 -12.69 9.93 84.03 0.83 -11.86 16 19 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 20 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 21 N -0.97 -59.28 13.06 21.65 0.28 -59.00 16 22 Si 0.97 46.76 29.55 68.60 2.03 48.78 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 25 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 26 C -0.11 -3.76 5.22 30.67 0.16 -3.60 16 27 C 0.12 3.51 6.44 86.36 0.56 4.06 16 28 O -0.15 -3.23 7.26 -5.12 -0.04 -3.27 16 29 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.06 0.24 8.14 -2.38 -0.02 0.22 16 31 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.19 1.67 8.06 -2.91 -0.02 1.64 16 35 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.11 2.21 4.26 -18.38 -0.08 2.13 16 38 H 0.10 1.93 6.36 -2.38 -0.02 1.91 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.08 1.93 6.40 -2.39 -0.02 1.92 16 42 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.37 19.68 7.58 -92.71 -0.70 18.98 16 45 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.06 2.50 7.40 -2.38 -0.02 2.49 16 48 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 49 H 0.08 2.57 7.00 -2.38 -0.02 2.55 16 Total: -1.00 -73.04 394.46 3.55 -69.48 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.18 Total: 28.83 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 6.63 Total: -0.68 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -3.59 Total: -115.26 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -1.70 Total: -31.16 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -73.04 3.55 -69.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753277768.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.293 kcal (2) G-P(sol) polarization free energy of solvation -73.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds