Wall clock time and date at job start Sat Apr 11 2020 04:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00315 * 2 1 4 4 C 1.50695 * 109.47525 * 180.02562 * 3 2 1 5 5 C 1.35132 * 125.61447 * 89.99922 * 4 3 2 6 6 C 1.40373 * 107.11258 * 180.02562 * 5 4 3 7 7 C 1.36542 * 106.70635 * 0.02562 * 6 5 4 8 8 C 1.46657 * 125.98596 * 179.97438 * 7 6 5 9 9 O 1.21698 * 120.00022 * 352.39613 * 8 7 6 10 10 N 1.34775 * 120.00284 * 172.39534 * 8 7 6 11 11 C 1.46926 * 120.62807 * 352.65180 * 10 8 7 12 12 C 1.53190 * 108.77331 * 233.58283 * 11 10 8 13 13 C 1.53041 * 109.31550 * 305.36418 * 12 11 10 14 14 C 1.53007 * 109.45983 * 181.38453 * 13 12 11 15 15 H 1.08996 * 109.47089 * 59.97548 * 14 13 12 16 16 C 1.53001 * 109.46916 * 299.97280 * 14 13 12 17 17 N 1.46495 * 109.46981 * 179.97438 * 14 13 12 18 18 C 1.36936 * 119.99982 * 204.99945 * 17 14 13 19 19 H 1.07998 * 120.00073 * 359.97438 * 18 17 14 20 20 C 1.38815 * 119.99914 * 179.97438 * 18 17 14 21 21 N 1.31619 * 120.00369 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99881 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47078 * 60.00217 * 22 20 18 24 24 H 1.48499 * 109.47350 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47236 * 300.00353 * 22 20 18 26 26 C 1.53048 * 109.52412 * 61.37329 * 13 12 11 27 27 C 1.46930 * 120.63294 * 172.62550 * 10 8 7 28 28 O 1.33932 * 125.61504 * 270.33379 * 4 3 2 29 29 H 1.09003 * 109.47094 * 59.99307 * 1 2 3 30 30 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46842 * 299.99418 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00200 * 3 2 1 33 33 H 1.09001 * 109.47058 * 300.00929 * 3 2 1 34 34 H 1.07997 * 126.44292 * 0.04038 * 5 4 3 35 35 H 1.07994 * 126.64184 * 180.02562 * 6 5 4 36 36 H 1.08999 * 109.58596 * 113.79826 * 11 10 8 37 37 H 1.08994 * 109.58618 * 353.37214 * 11 10 8 38 38 H 1.09005 * 109.50102 * 185.41326 * 12 11 10 39 39 H 1.08998 * 109.52609 * 65.33453 * 12 11 10 40 40 H 1.08994 * 109.46027 * 301.35955 * 13 12 11 41 41 H 1.09003 * 109.47000 * 60.00482 * 16 14 13 42 42 H 1.08996 * 109.47460 * 300.00041 * 16 14 13 43 43 H 1.09000 * 109.46639 * 179.97438 * 16 14 13 44 44 H 0.97005 * 120.00352 * 24.99679 * 17 14 13 45 45 H 0.96996 * 120.00601 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.49610 * 58.57895 * 26 13 12 47 47 H 1.09002 * 109.49355 * 178.67481 * 26 13 12 48 48 H 1.08998 * 109.58665 * 246.20606 * 27 10 8 49 49 H 1.08998 * 109.58392 * 6.48499 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2966 1.1245 -1.0995 6 6 5.6237 1.0187 -0.6546 7 6 5.5816 1.0210 0.7101 8 6 6.7373 0.9279 1.6081 9 8 7.8434 0.7000 1.1547 10 7 6.5745 1.0947 2.9356 11 6 5.2814 1.5276 3.4826 12 6 5.5064 2.7614 4.3624 13 6 6.5620 2.4409 5.4231 14 6 6.7644 3.6599 6.3255 15 1 5.8227 3.9110 6.8135 16 6 7.2338 4.8467 5.4816 17 7 7.7743 3.3532 7.3413 18 6 7.7758 4.0303 8.5316 19 1 7.0327 4.7907 8.7212 20 6 8.7325 3.7393 9.4944 21 7 9.6385 2.8129 9.2631 22 14 8.7341 4.6624 11.1183 23 1 7.4427 4.4381 11.8165 24 1 9.8484 4.1691 11.9671 25 1 8.9128 6.1142 10.8623 26 6 7.8846 2.0882 4.7385 27 6 7.6866 0.8466 3.8633 28 8 4.2900 1.1183 1.0878 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.9646 1.1515 -2.1268 35 1 6.5069 0.9491 -1.2722 36 1 4.8510 0.7252 4.0817 37 1 4.6052 1.7797 2.6658 38 1 4.5713 3.0354 4.8509 39 1 5.8511 3.5910 3.7452 40 1 6.2276 1.5956 6.0244 41 1 6.4823 5.0749 4.7257 42 1 8.1755 4.5956 4.9935 43 1 7.3775 5.7152 6.1243 44 1 8.4420 2.6705 7.1709 45 1 10.3072 2.6098 9.9357 46 1 8.2068 2.9239 4.1172 47 1 8.6423 1.8830 5.4947 48 1 7.4523 -0.0114 4.4933 49 1 8.5966 0.6469 3.2976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753277769.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:16 Heat of formation + Delta-G solvation = -43.796714 kcal Electronic energy + Delta-G solvation = -29555.109748 eV Core-core repulsion = 25484.871278 eV Total energy + Delta-G solvation = -4070.238470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.07245 -40.05282 -38.34449 -38.02422 -35.51646 -33.54617 -32.87334 -31.81602 -30.96513 -30.61723 -28.26686 -27.75240 -26.21304 -25.20134 -23.86983 -23.41002 -22.22453 -21.95368 -21.07495 -20.16104 -18.67796 -17.67496 -17.35026 -17.15292 -16.71090 -16.33671 -16.27831 -15.99582 -15.01525 -14.79285 -14.60710 -14.40136 -14.12284 -13.79234 -13.75036 -13.57871 -13.36516 -13.19890 -13.03433 -12.86888 -12.59546 -12.37253 -12.16642 -11.96133 -11.86145 -11.51256 -11.27149 -11.04576 -10.81823 -10.58633 -10.47404 -10.35230 -10.29456 -10.28064 -10.13158 -10.08028 -9.66443 -9.51838 -9.00789 -8.88358 -8.59493 -6.93299 -5.74651 -3.02662 0.73160 1.90911 2.23096 2.89751 3.04980 3.44600 3.47732 3.49212 3.50117 4.17225 4.37232 4.54876 4.60095 4.67602 4.71386 4.84631 4.87895 4.92957 5.03975 5.09829 5.19844 5.25617 5.27357 5.39410 5.43720 5.50946 5.57983 5.62982 5.74061 5.81380 5.93366 5.96847 5.99396 6.04484 6.13332 6.22142 6.28121 6.31356 6.48983 6.49939 6.54932 6.61666 6.70542 6.79932 6.93847 7.17492 7.27211 7.71459 7.92977 8.44733 9.55524 10.14373 10.48724 11.48151 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018752 B = 0.002349 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.792302 B =11916.197570 C =12816.213585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.139 3.861 4 C 0.000 4.000 5 C -0.190 4.190 6 C -0.126 4.126 7 C -0.058 4.058 8 C 0.599 3.401 9 O -0.524 6.524 10 N -0.595 5.595 11 C 0.097 3.903 12 C -0.128 4.128 13 C -0.091 4.091 14 C 0.179 3.821 15 H 0.045 0.955 16 C -0.167 4.167 17 N -0.724 5.724 18 C -0.236 4.236 19 H 0.068 0.932 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 C -0.127 4.127 27 C 0.111 3.889 28 O -0.148 6.148 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.068 0.932 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.876 -4.046 -22.097 28.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.063 3.937 4 C -0.052 4.052 5 C -0.210 4.210 6 C -0.146 4.146 7 C -0.110 4.110 8 C 0.386 3.614 9 O -0.402 6.402 10 N -0.327 5.327 11 C -0.025 4.025 12 C -0.166 4.166 13 C -0.110 4.110 14 C 0.069 3.931 15 H 0.063 0.937 16 C -0.227 4.227 17 N -0.367 5.367 18 C -0.368 4.368 19 H 0.086 0.914 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.214 1.214 26 C -0.165 4.165 27 C -0.010 4.010 28 O -0.044 6.044 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.180 0.820 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.106 0.894 48 H 0.090 0.910 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.286 -4.236 -21.819 28.157 hybrid contribution 0.060 0.570 0.769 0.959 sum -17.226 -3.666 -21.050 27.446 Atomic orbital electron populations 1.22820 0.79900 1.03428 1.00400 1.87994 1.20391 1.26520 1.95531 1.20735 0.84158 0.86026 1.02749 1.22347 0.92908 1.05000 0.84942 1.21609 0.92382 1.07276 0.99695 1.21957 0.98598 1.01141 0.92935 1.22212 0.82044 1.12065 0.94692 1.16690 0.85710 0.77688 0.81313 1.90872 1.23337 1.50505 1.75510 1.48061 1.13814 1.65561 1.05285 1.22213 0.84089 0.97508 0.98711 1.22019 1.00095 0.97007 0.97495 1.21414 0.94218 0.99804 0.95591 1.20178 0.93019 0.91101 0.88816 0.93661 1.22540 1.00128 1.00654 0.99406 1.42485 1.34138 1.45713 1.14321 1.19192 1.10822 1.14546 0.92221 0.91371 1.24721 0.98264 0.99414 0.98646 1.69636 1.19067 1.34479 1.35076 0.86291 0.76912 0.79222 0.83890 1.21358 1.21752 1.21381 1.21981 0.98770 0.96905 0.98853 1.21821 0.89473 0.98502 0.91232 1.84229 1.16456 1.70068 1.33681 0.93642 0.89085 0.93497 0.90921 0.89612 0.82534 0.82005 0.91022 0.88401 0.90595 0.91152 0.90964 0.94505 0.93270 0.93149 0.78150 0.93506 0.91292 0.89404 0.91010 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -3.19 10.69 -35.23 -0.38 -3.57 16 3 C 0.14 0.92 6.46 36.00 0.23 1.16 16 4 C 0.00 0.00 6.94 -35.42 -0.25 -0.25 16 5 C -0.19 -1.72 10.77 -39.88 -0.43 -2.15 16 6 C -0.13 -1.39 10.63 -39.39 -0.42 -1.81 16 7 C -0.06 -0.74 6.76 -36.80 -0.25 -0.99 16 8 C 0.60 8.85 7.65 -12.86 -0.10 8.75 16 9 O -0.52 -9.09 16.30 5.19 0.08 -9.00 16 10 N -0.60 -8.18 2.97 -174.32 -0.52 -8.70 16 11 C 0.10 1.15 6.10 -3.71 -0.02 1.12 16 12 C -0.13 -1.61 4.97 -26.61 -0.13 -1.74 16 13 C -0.09 -1.42 2.14 -90.57 -0.19 -1.61 16 14 C 0.18 3.42 2.72 -67.93 -0.18 3.24 16 15 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 16 C -0.17 -3.00 8.79 37.16 0.33 -2.67 16 17 N -0.72 -17.68 5.04 -53.43 -0.27 -17.95 16 18 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 22 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 C -0.13 -1.99 4.81 -26.61 -0.13 -2.12 16 27 C 0.11 1.58 6.44 -3.71 -0.02 1.56 16 28 O -0.15 -1.69 7.27 4.99 0.04 -1.65 16 29 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.09 4.26 -52.95 -0.23 0.86 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.91 6.51 -51.93 -0.34 0.58 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.04 0.55 6.46 -51.93 -0.34 0.22 16 42 H 0.05 0.90 6.46 -51.93 -0.34 0.57 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.38 9.86 6.04 -40.82 -0.25 9.61 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.07 1.12 6.51 -51.93 -0.34 0.78 16 47 H 0.09 1.56 6.46 -51.93 -0.34 1.22 16 48 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -33.13 389.27 -7.73 -40.86 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.56 Total: 7.52 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.70 Total: -3.43 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.06 Total: -53.96 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.26 Total: -14.22 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.13 -7.73 -40.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753277769.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.936 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds