Wall clock time and date at job start Sat Apr 11 2020 04:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47384 * 2 1 4 4 C 1.53003 * 109.46841 * 239.99869 * 2 1 3 5 5 C 1.50704 * 109.46576 * 65.00022 * 4 2 1 6 6 O 1.21277 * 120.00525 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99936 * 180.02562 * 5 4 2 8 8 C 1.46925 * 120.63333 * 180.02562 * 7 5 4 9 9 C 1.53189 * 108.77251 * 233.58411 * 8 7 5 10 10 C 1.53049 * 109.31630 * 305.36250 * 9 8 7 11 11 C 1.52992 * 109.46109 * 181.38860 * 10 9 8 12 12 H 1.09002 * 109.47103 * 299.97040 * 11 10 9 13 13 C 1.52997 * 109.47482 * 59.97287 * 11 10 9 14 14 N 1.46497 * 109.47081 * 179.97438 * 11 10 9 15 15 C 1.36940 * 120.00565 * 154.99853 * 14 11 10 16 16 H 1.08004 * 119.99402 * 359.97438 * 15 14 11 17 17 C 1.38815 * 120.00150 * 179.97438 * 15 14 11 18 18 N 1.31618 * 120.00111 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99847 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47395 * 89.99619 * 19 17 15 21 21 H 1.48493 * 109.46907 * 209.99948 * 19 17 15 22 22 H 1.48506 * 109.46912 * 329.99546 * 19 17 15 23 23 C 1.53042 * 109.52476 * 61.37087 * 10 9 8 24 24 C 1.46935 * 120.62616 * 359.97292 * 7 5 4 25 25 C 1.52996 * 109.47195 * 120.00284 * 2 1 3 26 26 F 1.39900 * 109.47210 * 179.97438 * 25 2 1 27 27 F 1.39904 * 109.47188 * 299.99781 * 25 2 1 28 28 F 1.39907 * 109.47489 * 59.99812 * 25 2 1 29 29 H 1.09000 * 109.47384 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46635 * 299.99579 * 1 2 3 31 31 H 1.08996 * 109.47529 * 59.99294 * 1 2 3 32 32 H 1.08994 * 109.47373 * 305.00377 * 4 2 1 33 33 H 1.08997 * 109.46936 * 184.99634 * 4 2 1 34 34 H 1.08995 * 109.58787 * 113.79548 * 8 7 5 35 35 H 1.08995 * 109.70361 * 353.43847 * 8 7 5 36 36 H 1.08997 * 109.49975 * 185.41372 * 9 8 7 37 37 H 1.09002 * 109.52776 * 65.32724 * 9 8 7 38 38 H 1.09002 * 109.45741 * 301.36490 * 10 9 8 39 39 H 1.09002 * 109.47153 * 59.99783 * 13 11 10 40 40 H 1.09001 * 109.46832 * 299.99974 * 13 11 10 41 41 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 42 42 H 0.97006 * 119.99921 * 334.99446 * 14 11 10 43 43 H 0.96997 * 119.99796 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.49617 * 58.58251 * 23 10 9 45 45 H 1.08997 * 109.50004 * 178.67694 * 23 10 9 46 46 H 1.08993 * 109.58567 * 246.20092 * 24 7 5 47 47 H 1.08991 * 109.58764 * 6.49138 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0108 1.0870 -2.3633 7 7 1.9842 -0.3918 -3.7002 8 6 1.6032 0.3562 -4.9061 9 6 0.8644 -0.5884 -5.8593 10 6 1.7359 -1.8169 -6.1309 11 6 1.0158 -2.7463 -7.1099 12 1 0.0662 -3.0630 -6.6785 13 6 0.7573 -2.0033 -8.4222 14 7 1.8500 -3.9219 -7.3705 15 6 1.2716 -5.0973 -7.7695 16 1 0.2001 -5.1576 -7.8916 17 6 2.0622 -6.2111 -8.0169 18 7 3.3679 -6.1374 -7.8686 19 14 1.2731 -7.8142 -8.5619 20 1 1.1950 -7.8487 -10.0444 21 1 2.0915 -8.9567 -8.0826 22 1 -0.0947 -7.9115 -7.9917 23 6 1.9949 -2.5605 -4.8186 24 6 2.7473 -1.6381 -3.8536 25 6 2.0400 -0.7213 1.2492 26 9 3.4390 -0.7218 1.2489 27 9 1.5737 -0.0618 2.3915 28 9 1.5737 -2.0403 1.2492 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6053 -1.7198 -1.2952 33 1 3.1262 -0.7995 -1.2057 34 1 2.4978 0.7421 -5.3946 35 1 0.9496 1.1847 -4.6333 36 1 0.6607 -0.0723 -6.7975 37 1 -0.0755 -0.9024 -5.4052 38 1 2.6854 -1.5002 -6.5624 39 1 1.7068 -1.6866 -8.8535 40 1 0.1365 -1.1286 -8.2282 41 1 0.2446 -2.6657 -9.1198 42 1 2.8123 -3.8679 -7.2605 43 1 3.9203 -6.9159 -8.0411 44 1 1.0445 -2.8556 -4.3739 45 1 2.5960 -3.4481 -5.0159 46 1 3.7350 -1.4144 -4.2565 47 1 2.8498 -2.1254 -2.8841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753278413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:19 Heat of formation + Delta-G solvation = -198.854291 kcal Electronic energy + Delta-G solvation = -30399.925885 eV Core-core repulsion = 25781.106874 eV Total energy + Delta-G solvation = -4618.819011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.38148 -47.86829 -47.83395 -40.48750 -38.22393 -35.67258 -35.19418 -33.00604 -31.29011 -30.81637 -28.80174 -27.88873 -26.56451 -25.30327 -23.81360 -22.89205 -21.95548 -20.93899 -19.72756 -19.24067 -18.74134 -18.47361 -18.01088 -17.16025 -16.56281 -16.11423 -15.78784 -15.04662 -14.91502 -14.76743 -14.28999 -14.28185 -14.14588 -14.02339 -13.97301 -13.96388 -13.89960 -13.66819 -13.34772 -13.25323 -12.97292 -12.60563 -12.45033 -12.34676 -12.09322 -11.74143 -11.66159 -11.60791 -11.53583 -11.20413 -11.02510 -10.89300 -10.75131 -10.32267 -10.28500 -10.21556 -9.90750 -9.78708 -9.60885 -8.93510 -8.67362 -6.97681 -5.79599 -3.07477 2.37446 2.44116 2.86747 3.41022 3.46909 3.47904 3.50452 3.68906 3.76620 4.28910 4.45318 4.51280 4.55874 4.79071 4.89625 4.99970 5.04036 5.14372 5.16931 5.18675 5.33051 5.42843 5.50403 5.51575 5.58629 5.62859 5.72568 5.87652 5.88696 5.94529 5.99155 6.07457 6.16457 6.27858 6.36825 6.43867 6.50315 6.62233 6.74375 6.90984 7.09717 7.27306 7.68128 7.97930 8.39499 9.50820 10.08636 10.43379 11.43066 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.014592 B = 0.002635 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.372848 B =10625.163634 C =11833.117154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.117 4.117 3 H 0.122 0.878 4 C -0.146 4.146 5 C 0.523 3.477 6 O -0.546 6.546 7 N -0.604 5.604 8 C 0.112 3.888 9 C -0.128 4.128 10 C -0.090 4.090 11 C 0.178 3.822 12 H 0.045 0.955 13 C -0.167 4.167 14 N -0.723 5.723 15 C -0.235 4.235 16 H 0.068 0.932 17 C -0.013 4.013 18 N -0.934 5.934 19 Si 0.904 3.096 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.283 1.283 23 C -0.123 4.123 24 C 0.102 3.898 25 C 0.453 3.547 26 F -0.184 7.184 27 F -0.182 7.182 28 F -0.181 7.181 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.038 0.962 41 H 0.051 0.949 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.007 14.568 15.481 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.136 4.136 3 H 0.140 0.860 4 C -0.186 4.186 5 C 0.311 3.689 6 O -0.424 6.424 7 N -0.336 5.336 8 C -0.010 4.010 9 C -0.167 4.167 10 C -0.109 4.109 11 C 0.068 3.932 12 H 0.063 0.937 13 C -0.227 4.227 14 N -0.364 5.364 15 C -0.366 4.366 16 H 0.086 0.914 17 C -0.209 4.209 18 N -0.582 5.582 19 Si 0.735 3.265 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.161 4.161 24 C -0.021 4.021 25 C 0.399 3.601 26 F -0.166 7.166 27 F -0.164 7.164 28 F -0.162 7.162 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.112 0.888 46 H 0.090 0.910 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.432 14.926 15.523 21.672 hybrid contribution 0.190 -1.243 -0.214 1.275 sum -2.243 13.684 15.309 20.655 Atomic orbital electron populations 1.22009 0.90868 1.03563 1.05167 1.22165 1.00401 1.01555 0.89513 0.86033 1.21762 1.03958 1.01013 0.91820 1.20142 0.79200 0.85325 0.84273 1.90655 1.40691 1.24877 1.86225 1.48166 1.54848 1.24946 1.05687 1.21650 0.99831 0.94899 0.84584 1.22018 0.99026 0.96512 0.99097 1.21382 0.99114 0.94690 0.95746 1.20209 0.94027 0.87224 0.91726 0.93746 1.22499 1.00429 0.99160 1.00570 1.42414 1.05950 1.06776 1.81281 1.19218 0.91928 0.88210 1.37268 0.91363 1.24701 0.95439 0.98078 1.02713 1.69646 1.02992 1.29733 1.55861 0.86239 0.78141 0.83773 0.78341 1.21835 1.21827 1.20826 1.21903 1.01178 0.98533 0.94509 1.21979 0.95084 0.83989 1.01009 1.20655 0.75396 0.77827 0.86269 1.93184 1.30143 1.96434 1.96806 1.93177 1.88470 1.80761 1.53974 1.93188 1.88409 1.37838 1.96810 0.91670 0.91437 0.88328 0.87260 0.87581 0.91548 0.89252 0.90342 0.91665 0.91365 0.93601 0.94304 0.93023 0.78353 0.93574 0.91868 0.88799 0.90951 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 8.69 37.16 0.32 -1.06 16 2 C -0.12 -0.99 2.01 -90.62 -0.18 -1.18 16 3 H 0.12 1.02 7.96 -51.93 -0.41 0.61 16 4 C -0.15 -1.26 3.28 -27.88 -0.09 -1.35 16 5 C 0.52 5.85 7.42 -10.98 -0.08 5.77 16 6 O -0.55 -7.40 13.38 5.56 0.07 -7.33 16 7 N -0.60 -6.71 2.97 -172.75 -0.51 -7.22 16 8 C 0.11 1.25 6.43 -3.71 -0.02 1.23 16 9 C -0.13 -1.53 5.04 -26.61 -0.13 -1.67 16 10 C -0.09 -1.29 1.79 -90.58 -0.16 -1.45 16 11 C 0.18 3.23 2.47 -67.94 -0.17 3.06 16 12 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 13 C -0.17 -2.83 9.14 37.16 0.34 -2.49 16 14 N -0.72 -16.76 4.41 -53.43 -0.24 -17.00 16 15 C -0.23 -6.22 9.93 -15.06 -0.15 -6.37 16 16 H 0.07 1.79 7.83 -52.48 -0.41 1.37 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -27.11 13.06 55.49 0.72 -26.38 16 19 Si 0.90 21.87 29.55 -169.99 -5.02 16.85 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.12 -1.70 5.22 -26.59 -0.14 -1.83 16 24 C 0.10 1.09 6.35 -3.68 -0.02 1.06 16 25 C 0.45 4.12 2.69 37.16 0.10 4.22 16 26 F -0.18 -1.77 16.71 2.25 0.04 -1.73 16 27 F -0.18 -1.77 16.80 2.25 0.04 -1.73 16 28 F -0.18 -1.79 16.37 2.25 0.04 -1.75 16 29 H 0.06 0.54 7.80 -51.93 -0.41 0.14 16 30 H 0.07 0.53 7.80 -51.93 -0.41 0.12 16 31 H 0.10 1.01 5.95 -51.93 -0.31 0.70 16 32 H 0.11 0.88 7.50 -51.93 -0.39 0.49 16 33 H 0.11 0.78 7.46 -51.93 -0.39 0.39 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.04 7.01 -51.93 -0.36 0.67 16 36 H 0.08 0.88 6.36 -51.93 -0.33 0.55 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.38 9.42 7.58 -40.82 -0.31 9.11 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.09 1.55 7.41 -51.93 -0.38 1.16 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -29.66 376.90 -6.93 -36.60 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.26 Total: 6.53 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.49 Total: -2.51 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.02 Total: -50.60 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: 0.07 Total: -7.33 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.11 Total: -5.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.66 -6.93 -36.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753278413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.259 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds