Wall clock time and date at job start Sat Apr 11 2020 04:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47384 * 2 1 4 4 C 1.53003 * 109.46841 * 239.99869 * 2 1 3 5 5 C 1.50704 * 109.46576 * 65.00022 * 4 2 1 6 6 O 1.21277 * 120.00525 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99936 * 180.02562 * 5 4 2 8 8 C 1.46925 * 120.63333 * 180.02562 * 7 5 4 9 9 C 1.53189 * 108.77251 * 233.58411 * 8 7 5 10 10 C 1.53049 * 109.31630 * 305.36250 * 9 8 7 11 11 C 1.52992 * 109.46109 * 181.38860 * 10 9 8 12 12 H 1.09002 * 109.47103 * 299.97040 * 11 10 9 13 13 C 1.52997 * 109.47482 * 59.97287 * 11 10 9 14 14 N 1.46497 * 109.47081 * 179.97438 * 11 10 9 15 15 C 1.36940 * 120.00565 * 154.99853 * 14 11 10 16 16 H 1.08004 * 119.99402 * 359.97438 * 15 14 11 17 17 C 1.38815 * 120.00150 * 179.97438 * 15 14 11 18 18 N 1.31618 * 120.00111 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99847 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47395 * 89.99619 * 19 17 15 21 21 H 1.48493 * 109.46907 * 209.99948 * 19 17 15 22 22 H 1.48506 * 109.46912 * 329.99546 * 19 17 15 23 23 C 1.53042 * 109.52476 * 61.37087 * 10 9 8 24 24 C 1.46935 * 120.62616 * 359.97292 * 7 5 4 25 25 C 1.52996 * 109.47195 * 120.00284 * 2 1 3 26 26 F 1.39900 * 109.47210 * 179.97438 * 25 2 1 27 27 F 1.39904 * 109.47188 * 299.99781 * 25 2 1 28 28 F 1.39907 * 109.47489 * 59.99812 * 25 2 1 29 29 H 1.09000 * 109.47384 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46635 * 299.99579 * 1 2 3 31 31 H 1.08996 * 109.47529 * 59.99294 * 1 2 3 32 32 H 1.08994 * 109.47373 * 305.00377 * 4 2 1 33 33 H 1.08997 * 109.46936 * 184.99634 * 4 2 1 34 34 H 1.08995 * 109.58787 * 113.79548 * 8 7 5 35 35 H 1.08995 * 109.70361 * 353.43847 * 8 7 5 36 36 H 1.08997 * 109.49975 * 185.41372 * 9 8 7 37 37 H 1.09002 * 109.52776 * 65.32724 * 9 8 7 38 38 H 1.09002 * 109.45741 * 301.36490 * 10 9 8 39 39 H 1.09002 * 109.47153 * 59.99783 * 13 11 10 40 40 H 1.09001 * 109.46832 * 299.99974 * 13 11 10 41 41 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 42 42 H 0.97006 * 119.99921 * 334.99446 * 14 11 10 43 43 H 0.96997 * 119.99796 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.49617 * 58.58251 * 23 10 9 45 45 H 1.08997 * 109.50004 * 178.67694 * 23 10 9 46 46 H 1.08993 * 109.58567 * 246.20092 * 24 7 5 47 47 H 1.08991 * 109.58764 * 6.49138 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0108 1.0870 -2.3633 7 7 1.9842 -0.3918 -3.7002 8 6 1.6032 0.3562 -4.9061 9 6 0.8644 -0.5884 -5.8593 10 6 1.7359 -1.8169 -6.1309 11 6 1.0158 -2.7463 -7.1099 12 1 0.0662 -3.0630 -6.6785 13 6 0.7573 -2.0033 -8.4222 14 7 1.8500 -3.9219 -7.3705 15 6 1.2716 -5.0973 -7.7695 16 1 0.2001 -5.1576 -7.8916 17 6 2.0622 -6.2111 -8.0169 18 7 3.3679 -6.1374 -7.8686 19 14 1.2731 -7.8142 -8.5619 20 1 1.1950 -7.8487 -10.0444 21 1 2.0915 -8.9567 -8.0826 22 1 -0.0947 -7.9115 -7.9917 23 6 1.9949 -2.5605 -4.8186 24 6 2.7473 -1.6381 -3.8536 25 6 2.0400 -0.7213 1.2492 26 9 3.4390 -0.7218 1.2489 27 9 1.5737 -0.0618 2.3915 28 9 1.5737 -2.0403 1.2492 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6053 -1.7198 -1.2952 33 1 3.1262 -0.7995 -1.2057 34 1 2.4978 0.7421 -5.3946 35 1 0.9496 1.1847 -4.6333 36 1 0.6607 -0.0723 -6.7975 37 1 -0.0755 -0.9024 -5.4052 38 1 2.6854 -1.5002 -6.5624 39 1 1.7068 -1.6866 -8.8535 40 1 0.1365 -1.1286 -8.2282 41 1 0.2446 -2.6657 -9.1198 42 1 2.8123 -3.8679 -7.2605 43 1 3.9203 -6.9159 -8.0411 44 1 1.0445 -2.8556 -4.3739 45 1 2.5960 -3.4481 -5.0159 46 1 3.7350 -1.4144 -4.2565 47 1 2.8498 -2.1254 -2.8841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753278413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:18 Heat of formation + Delta-G solvation = -214.674182 kcal Electronic energy + Delta-G solvation = -30400.611887 eV Core-core repulsion = 25781.106874 eV Total energy + Delta-G solvation = -4619.505013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.11887 -48.60690 -48.57889 -41.40011 -39.34529 -36.96624 -36.02885 -34.63449 -32.59362 -32.03386 -30.21240 -28.91734 -27.29194 -26.56611 -25.43457 -23.97522 -22.88299 -21.99591 -21.05292 -20.13362 -19.53415 -19.30595 -19.04420 -18.69070 -17.46425 -16.93928 -16.82371 -16.54715 -15.82019 -15.62932 -15.54497 -15.45404 -15.10028 -15.03236 -15.01013 -14.87789 -14.75465 -14.70826 -14.25287 -14.19388 -14.13768 -13.98641 -13.54645 -13.40955 -13.24716 -12.94720 -12.83212 -12.75247 -12.39506 -12.37951 -12.27204 -12.26368 -12.16026 -12.04679 -11.79702 -11.47113 -11.30446 -11.16041 -10.89552 -10.73434 -9.62019 -8.92899 -7.89811 -5.15544 1.48622 1.49171 1.55399 1.57008 1.66208 2.04485 2.58986 2.78209 2.96804 3.05765 3.44123 3.51881 3.70747 3.79580 3.82806 3.87163 3.94842 4.17079 4.21291 4.28038 4.42399 4.47592 4.49427 4.53089 4.58682 4.63799 4.78909 4.82576 4.85058 4.91507 4.92266 4.96230 5.08085 5.11756 5.16655 5.25312 5.28566 5.39551 5.51145 5.54951 5.65208 5.71373 6.33495 6.39424 7.11168 7.40163 8.18436 8.41393 9.33361 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.014592 B = 0.002635 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.372848 B =10625.163634 C =11833.117154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 H 0.124 0.876 4 C -0.144 4.144 5 C 0.522 3.478 6 O -0.570 6.570 7 N -0.605 5.605 8 C 0.114 3.886 9 C -0.117 4.117 10 C -0.081 4.081 11 C 0.172 3.828 12 H 0.033 0.967 13 C -0.158 4.158 14 N -0.731 5.731 15 C -0.230 4.230 16 H 0.068 0.932 17 C -0.073 4.073 18 N -0.966 5.966 19 Si 0.962 3.038 20 H -0.292 1.292 21 H -0.297 1.297 22 H -0.273 1.273 23 C -0.118 4.118 24 C 0.110 3.890 25 C 0.457 3.543 26 F -0.186 7.186 27 F -0.186 7.186 28 F -0.185 7.185 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.028 0.972 42 H 0.374 0.626 43 H 0.249 0.751 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.351 15.545 16.205 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.131 4.131 3 H 0.142 0.858 4 C -0.183 4.183 5 C 0.311 3.689 6 O -0.450 6.450 7 N -0.337 5.337 8 C -0.008 4.008 9 C -0.156 4.156 10 C -0.100 4.100 11 C 0.064 3.936 12 H 0.052 0.948 13 C -0.218 4.218 14 N -0.371 5.371 15 C -0.363 4.363 16 H 0.086 0.914 17 C -0.265 4.265 18 N -0.618 5.618 19 Si 0.792 3.208 20 H -0.219 1.219 21 H -0.224 1.224 22 H -0.198 1.198 23 C -0.156 4.156 24 C -0.013 4.013 25 C 0.403 3.597 26 F -0.167 7.167 27 F -0.167 7.167 28 F -0.167 7.167 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.206 0.794 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.813 15.932 16.250 22.931 hybrid contribution 0.234 -1.481 -0.427 1.559 sum -2.579 14.452 15.823 21.584 Atomic orbital electron populations 1.21957 0.91033 1.03602 1.04715 1.22120 1.00206 1.01617 0.89180 0.85769 1.21798 1.05128 1.00893 0.90515 1.20503 0.78514 0.85093 0.84764 1.90652 1.41739 1.26088 1.86567 1.48209 1.54806 1.24888 1.05839 1.21629 1.00223 0.94470 0.84446 1.21919 0.98212 0.95461 0.99988 1.21257 0.99030 0.94793 0.94906 1.20439 0.93271 0.86553 0.93311 0.94840 1.22370 1.00696 0.99772 0.98961 1.42564 1.05932 1.07520 1.81101 1.19527 0.91979 0.89333 1.35414 0.91369 1.25380 0.95966 1.01019 1.04132 1.69781 1.04068 1.30099 1.57806 0.85305 0.77614 0.80240 0.77624 1.21948 1.22361 1.19775 1.21775 1.00626 0.98150 0.95097 1.21926 0.94707 0.83299 1.01319 1.20671 0.75237 0.77580 0.86261 1.93182 1.30317 1.96427 1.96811 1.93171 1.88510 1.80814 1.54246 1.93182 1.88457 1.38209 1.96827 0.91390 0.90785 0.89826 0.86375 0.85832 0.90311 0.89464 0.89130 0.92260 0.91376 0.93819 0.90839 0.95270 0.79408 0.94224 0.92701 0.91796 0.89962 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.69 71.98 0.63 -1.87 16 2 C -0.11 -1.70 2.01 -10.79 -0.02 -1.72 16 3 H 0.12 1.87 7.96 -2.39 -0.02 1.85 16 4 C -0.14 -2.15 3.28 29.85 0.10 -2.05 16 5 C 0.52 10.63 7.42 87.66 0.65 11.28 16 6 O -0.57 -14.59 13.38 -3.02 -0.04 -14.63 16 7 N -0.61 -12.11 2.97 -818.84 -2.43 -14.54 16 8 C 0.11 2.29 6.43 86.36 0.56 2.84 16 9 C -0.12 -2.56 5.04 30.67 0.15 -2.41 16 10 C -0.08 -2.21 1.79 -10.77 -0.02 -2.23 16 11 C 0.17 6.18 2.47 44.99 0.11 6.29 16 12 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 13 C -0.16 -5.19 9.14 71.98 0.66 -4.53 16 14 N -0.73 -34.22 4.41 -322.95 -1.42 -35.64 16 15 C -0.23 -12.28 9.93 84.03 0.83 -11.45 16 16 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 17 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 18 N -0.97 -57.04 13.06 21.65 0.28 -56.76 16 19 Si 0.96 45.31 29.55 68.60 2.03 47.34 16 20 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 21 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 23 C -0.12 -3.17 5.22 30.69 0.16 -3.00 16 24 C 0.11 2.11 6.35 86.38 0.55 2.66 16 25 C 0.46 7.50 2.69 71.98 0.19 7.70 16 26 F -0.19 -3.20 16.71 44.97 0.75 -2.45 16 27 F -0.19 -3.33 16.80 44.97 0.76 -2.57 16 28 F -0.19 -3.34 16.37 44.97 0.74 -2.60 16 29 H 0.07 1.03 7.80 -2.39 -0.02 1.01 16 30 H 0.07 1.06 7.80 -2.38 -0.02 1.04 16 31 H 0.08 1.64 5.95 -2.39 -0.01 1.62 16 32 H 0.12 1.59 7.50 -2.39 -0.02 1.58 16 33 H 0.12 1.44 7.46 -2.39 -0.02 1.42 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 1.85 7.01 -2.39 -0.02 1.83 16 36 H 0.09 1.77 6.36 -2.39 -0.02 1.75 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.88 6.40 -2.39 -0.02 1.87 16 41 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.37 18.73 7.58 -92.70 -0.70 18.03 16 43 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 2.13 7.41 -2.39 -0.02 2.11 16 46 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.10 1.56 5.93 -2.39 -0.01 1.55 16 Total: -1.00 -63.62 376.90 5.95 -57.67 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.28 Total: 26.25 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.01 Total: -2.06 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -3.57 Total: -106.94 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.04 Total: -14.63 kcal Atomic # 9 Polarization: -9.87 SS G_CDS: 2.24 Total: -7.63 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -63.62 5.95 -57.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753278413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.008 kcal (2) G-P(sol) polarization free energy of solvation -63.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds