Wall clock time and date at job start Sat Apr 11 2020 04:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47092 * 2 1 4 4 C 1.53007 * 109.46948 * 240.00598 * 2 1 3 5 5 C 1.50696 * 109.47054 * 64.99981 * 4 2 1 6 6 O 1.21286 * 120.00306 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00030 * 180.02562 * 5 4 2 8 8 C 1.46926 * 120.63336 * 180.02562 * 7 5 4 9 9 C 1.53191 * 108.89109 * 233.68039 * 8 7 5 10 10 C 1.53035 * 109.31327 * 305.29292 * 9 8 7 11 11 C 1.53007 * 109.46118 * 181.38770 * 10 9 8 12 12 H 1.09004 * 109.47043 * 59.99911 * 11 10 9 13 13 C 1.52994 * 109.46992 * 300.00084 * 11 10 9 14 14 N 1.46497 * 109.47126 * 179.97438 * 11 10 9 15 15 C 1.36936 * 120.00060 * 204.99679 * 14 11 10 16 16 H 1.08002 * 119.99772 * 0.02562 * 15 14 11 17 17 C 1.38813 * 120.00225 * 180.02562 * 15 14 11 18 18 N 1.31617 * 119.99624 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99900 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47336 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47013 * 119.99817 * 19 17 15 22 22 H 1.48500 * 109.47083 * 239.99521 * 19 17 15 23 23 C 1.53038 * 109.54175 * 61.36680 * 10 9 8 24 24 C 1.47207 * 120.81118 * 0.14238 * 7 5 4 25 25 C 1.53001 * 109.47297 * 120.00651 * 2 1 3 26 26 F 1.39903 * 109.46820 * 179.97438 * 25 2 1 27 27 F 1.39899 * 109.46888 * 299.99684 * 25 2 1 28 28 F 1.39892 * 109.47200 * 59.99681 * 25 2 1 29 29 H 1.09006 * 109.47308 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47433 * 299.99362 * 1 2 3 31 31 H 1.09004 * 109.47338 * 59.99602 * 1 2 3 32 32 H 1.08992 * 109.47110 * 304.99752 * 4 2 1 33 33 H 1.09000 * 109.46956 * 184.99357 * 4 2 1 34 34 H 1.09002 * 109.58861 * 113.82042 * 8 7 5 35 35 H 1.08996 * 109.58519 * 353.53933 * 8 7 5 36 36 H 1.09003 * 109.49975 * 65.24379 * 9 8 7 37 37 H 1.09000 * 109.49553 * 185.30642 * 9 8 7 38 38 H 1.09004 * 109.45942 * 301.34050 * 10 9 8 39 39 H 1.08993 * 109.47316 * 179.97438 * 13 11 10 40 40 H 1.09004 * 109.47085 * 299.99801 * 13 11 10 41 41 H 1.09000 * 109.47538 * 59.99899 * 13 11 10 42 42 H 0.97000 * 120.00145 * 25.00283 * 14 11 10 43 43 H 0.97002 * 119.99578 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.49557 * 58.58503 * 23 10 9 45 45 H 1.08996 * 109.50003 * 178.68400 * 23 10 9 46 46 H 1.08996 * 109.53610 * 6.53286 * 24 7 5 47 47 H 1.09002 * 109.68003 * 246.22753 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0573 -2.4766 6 8 1.0108 1.0872 -2.3632 7 7 1.9843 -0.3916 -3.7003 8 6 1.6033 0.3565 -4.9061 9 6 0.8622 -0.5850 -5.8604 10 6 1.7315 -1.8141 -6.1354 11 6 1.0090 -2.7406 -7.1155 12 1 0.8251 -2.2093 -8.0494 13 6 -0.3242 -3.1839 -6.5099 14 7 1.8412 -3.9170 -7.3793 15 6 1.6915 -4.6133 -8.5489 16 1 0.9601 -4.2950 -9.2770 17 6 2.4797 -5.7283 -8.7987 18 7 3.3714 -6.1159 -7.9116 19 14 2.2758 -6.6777 -10.3945 20 1 1.2152 -6.0420 -11.2167 21 1 3.5576 -6.6665 -11.1443 22 1 1.8924 -8.0798 -10.0907 23 6 1.9911 -2.5609 -4.8251 24 6 2.7456 -1.6415 -3.8589 25 6 2.0400 -0.7214 1.2492 26 9 3.4390 -0.7218 1.2488 27 9 1.5737 -0.0620 2.3915 28 9 1.5737 -2.0403 1.2491 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6054 -1.7196 -1.2954 33 1 3.1263 -0.7993 -1.2058 34 1 2.4981 0.7422 -5.3948 35 1 0.9513 1.1855 -4.6309 36 1 -0.0775 -0.8985 -5.4055 37 1 0.6577 -0.0665 -6.7971 38 1 2.6809 -1.4980 -6.5676 39 1 -0.8391 -3.8435 -7.2082 40 1 -0.1403 -3.7152 -5.5760 41 1 -0.9433 -2.3084 -6.3139 42 1 2.4983 -4.2027 -6.7255 43 1 3.9219 -6.8953 -8.0859 44 1 1.0408 -2.8557 -4.3799 45 1 2.5907 -3.4489 -5.0250 46 1 2.8464 -2.1322 -2.8908 47 1 3.7343 -1.4206 -4.2612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753278414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:22 Heat of formation + Delta-G solvation = -196.606736 kcal Electronic energy + Delta-G solvation = -30467.527394 eV Core-core repulsion = 25848.805844 eV Total energy + Delta-G solvation = -4618.721550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.39671 -47.88156 -47.85080 -40.51074 -38.33778 -35.68821 -35.18992 -33.02123 -31.37375 -30.61694 -28.75279 -27.89757 -26.58448 -25.28530 -23.83911 -23.20804 -22.15665 -21.17338 -19.64766 -18.95351 -18.66124 -18.29436 -17.96510 -17.26777 -16.56890 -16.13420 -15.78799 -15.00486 -14.92387 -14.77976 -14.45245 -14.29619 -14.27814 -14.18505 -14.02955 -13.98435 -13.85093 -13.55937 -13.38048 -13.26679 -13.07251 -12.73063 -12.46475 -12.22136 -12.06032 -11.74003 -11.69103 -11.59464 -11.52840 -11.40279 -11.07060 -10.88787 -10.63951 -10.37882 -10.30775 -10.13089 -9.93145 -9.71585 -9.58350 -8.94318 -8.70194 -6.98121 -5.80030 -3.07737 2.35912 2.42570 2.84560 3.40690 3.46927 3.48663 3.48900 3.67317 3.75233 4.26987 4.43498 4.49674 4.55906 4.76323 4.86893 4.99900 5.03730 5.12793 5.14129 5.16661 5.32992 5.39871 5.48113 5.52148 5.57081 5.59779 5.73830 5.76989 5.91510 5.93690 5.94812 6.08403 6.15099 6.21251 6.26466 6.42737 6.50268 6.62788 6.72228 6.88662 7.11953 7.25589 7.68617 7.96276 8.39650 9.50858 10.08929 10.43252 11.42954 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.002442 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.611869 B =11461.962849 C =12233.905991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.117 4.117 3 H 0.122 0.878 4 C -0.146 4.146 5 C 0.523 3.477 6 O -0.545 6.545 7 N -0.604 5.604 8 C 0.112 3.888 9 C -0.128 4.128 10 C -0.090 4.090 11 C 0.178 3.822 12 H 0.046 0.954 13 C -0.167 4.167 14 N -0.725 5.725 15 C -0.235 4.235 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.129 4.129 24 C 0.103 3.897 25 C 0.453 3.547 26 F -0.184 7.184 27 F -0.182 7.182 28 F -0.181 7.181 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.037 0.963 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.801 13.783 16.909 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.136 4.136 3 H 0.140 0.860 4 C -0.185 4.185 5 C 0.311 3.689 6 O -0.424 6.424 7 N -0.336 5.336 8 C -0.010 4.010 9 C -0.167 4.167 10 C -0.110 4.110 11 C 0.068 3.932 12 H 0.064 0.936 13 C -0.227 4.227 14 N -0.367 5.367 15 C -0.366 4.366 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.167 4.167 24 C -0.020 4.020 25 C 0.399 3.601 26 F -0.166 7.166 27 F -0.164 7.164 28 F -0.163 7.163 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.153 14.235 16.807 22.250 hybrid contribution 0.370 -1.075 -0.481 1.235 sum -2.783 13.160 16.326 21.153 Atomic orbital electron populations 1.22009 0.90864 1.03550 1.05184 1.22168 1.00401 1.01572 0.89507 0.86022 1.21760 1.03971 1.00988 0.91831 1.20128 0.79189 0.85345 0.84234 1.90660 1.40660 1.24870 1.86197 1.48203 1.54927 1.24817 1.05695 1.21654 0.99868 0.94891 0.84615 1.22012 0.99249 0.96357 0.99049 1.21393 0.99233 0.94706 0.95623 1.20190 0.89972 0.88345 0.94703 0.93632 1.22530 0.99297 0.99762 1.01082 1.42494 1.43345 1.29634 1.21218 1.19288 1.15908 1.06169 0.95283 0.91250 1.24713 0.98995 0.98995 0.98345 1.69655 1.25811 1.27739 1.35084 0.86151 0.77185 0.79869 0.83196 1.20627 1.21925 1.21941 1.21994 1.01141 0.98488 0.95080 1.21991 0.95151 0.83949 1.00876 1.20651 0.75401 0.77817 0.86272 1.93186 1.30137 1.96433 1.96806 1.93177 1.88467 1.80759 1.53968 1.93183 1.88409 1.37855 1.96810 0.91682 0.91427 0.88321 0.87289 0.87569 0.91519 0.89253 0.91188 0.90733 0.91020 0.93149 0.93365 0.94421 0.78215 0.93615 0.91279 0.89414 0.89997 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.69 37.16 0.32 -1.02 16 2 C -0.12 -0.97 2.01 -90.62 -0.18 -1.15 16 3 H 0.12 1.00 7.96 -51.93 -0.41 0.59 16 4 C -0.15 -1.22 3.29 -27.88 -0.09 -1.31 16 5 C 0.52 5.74 7.42 -10.99 -0.08 5.66 16 6 O -0.55 -7.30 13.38 5.55 0.07 -7.23 16 7 N -0.60 -6.58 2.98 -172.52 -0.51 -7.09 16 8 C 0.11 1.24 6.42 -3.71 -0.02 1.22 16 9 C -0.13 -1.53 4.97 -26.61 -0.13 -1.66 16 10 C -0.09 -1.29 2.14 -90.58 -0.19 -1.49 16 11 C 0.18 3.25 2.72 -67.93 -0.18 3.06 16 12 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 13 C -0.17 -2.84 8.79 37.15 0.33 -2.51 16 14 N -0.72 -16.99 5.04 -53.42 -0.27 -17.26 16 15 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -27.28 13.06 55.49 0.72 -26.55 16 19 Si 0.90 21.97 29.55 -169.99 -5.02 16.94 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 C -0.13 -1.70 4.82 -26.59 -0.13 -1.83 16 24 C 0.10 1.06 6.36 -3.53 -0.02 1.04 16 25 C 0.45 4.03 2.69 37.16 0.10 4.13 16 26 F -0.18 -1.73 16.71 2.25 0.04 -1.70 16 27 F -0.18 -1.74 16.80 2.25 0.04 -1.70 16 28 F -0.18 -1.74 16.37 2.25 0.04 -1.71 16 29 H 0.06 0.52 7.80 -51.93 -0.41 0.12 16 30 H 0.07 0.52 7.80 -51.93 -0.41 0.11 16 31 H 0.10 0.99 5.95 -51.93 -0.31 0.68 16 32 H 0.11 0.83 7.50 -51.93 -0.39 0.44 16 33 H 0.11 0.75 7.48 -51.93 -0.39 0.37 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.03 7.00 -51.93 -0.36 0.67 16 36 H 0.07 0.87 6.51 -51.93 -0.34 0.53 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.82 6.46 -51.93 -0.34 0.48 16 41 H 0.04 0.54 6.46 -51.93 -0.34 0.21 16 42 H 0.38 9.37 6.04 -40.82 -0.25 9.12 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.07 0.93 6.51 -51.93 -0.34 0.59 16 45 H 0.09 1.35 6.46 -51.93 -0.34 1.02 16 46 H 0.08 0.69 5.97 -51.93 -0.31 0.38 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -30.16 371.78 -6.82 -36.98 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.99 Total: 6.52 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -0.54 Total: -2.82 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.06 Total: -50.90 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: 0.07 Total: -7.23 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.11 Total: -5.10 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.16 -6.82 -36.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753278414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.627 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds