Wall clock time and date at job start Sat Apr 11 2020 04:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47092 * 2 1 4 4 C 1.53007 * 109.46948 * 240.00598 * 2 1 3 5 5 C 1.50696 * 109.47054 * 64.99981 * 4 2 1 6 6 O 1.21286 * 120.00306 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00030 * 180.02562 * 5 4 2 8 8 C 1.46926 * 120.63336 * 180.02562 * 7 5 4 9 9 C 1.53191 * 108.89109 * 233.68039 * 8 7 5 10 10 C 1.53035 * 109.31327 * 305.29292 * 9 8 7 11 11 C 1.53007 * 109.46118 * 181.38770 * 10 9 8 12 12 H 1.09004 * 109.47043 * 59.99911 * 11 10 9 13 13 C 1.52994 * 109.46992 * 300.00084 * 11 10 9 14 14 N 1.46497 * 109.47126 * 179.97438 * 11 10 9 15 15 C 1.36936 * 120.00060 * 204.99679 * 14 11 10 16 16 H 1.08002 * 119.99772 * 0.02562 * 15 14 11 17 17 C 1.38813 * 120.00225 * 180.02562 * 15 14 11 18 18 N 1.31617 * 119.99624 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99900 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47336 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47013 * 119.99817 * 19 17 15 22 22 H 1.48500 * 109.47083 * 239.99521 * 19 17 15 23 23 C 1.53038 * 109.54175 * 61.36680 * 10 9 8 24 24 C 1.47207 * 120.81118 * 0.14238 * 7 5 4 25 25 C 1.53001 * 109.47297 * 120.00651 * 2 1 3 26 26 F 1.39903 * 109.46820 * 179.97438 * 25 2 1 27 27 F 1.39899 * 109.46888 * 299.99684 * 25 2 1 28 28 F 1.39892 * 109.47200 * 59.99681 * 25 2 1 29 29 H 1.09006 * 109.47308 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47433 * 299.99362 * 1 2 3 31 31 H 1.09004 * 109.47338 * 59.99602 * 1 2 3 32 32 H 1.08992 * 109.47110 * 304.99752 * 4 2 1 33 33 H 1.09000 * 109.46956 * 184.99357 * 4 2 1 34 34 H 1.09002 * 109.58861 * 113.82042 * 8 7 5 35 35 H 1.08996 * 109.58519 * 353.53933 * 8 7 5 36 36 H 1.09003 * 109.49975 * 65.24379 * 9 8 7 37 37 H 1.09000 * 109.49553 * 185.30642 * 9 8 7 38 38 H 1.09004 * 109.45942 * 301.34050 * 10 9 8 39 39 H 1.08993 * 109.47316 * 179.97438 * 13 11 10 40 40 H 1.09004 * 109.47085 * 299.99801 * 13 11 10 41 41 H 1.09000 * 109.47538 * 59.99899 * 13 11 10 42 42 H 0.97000 * 120.00145 * 25.00283 * 14 11 10 43 43 H 0.97002 * 119.99578 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.49557 * 58.58503 * 23 10 9 45 45 H 1.08996 * 109.50003 * 178.68400 * 23 10 9 46 46 H 1.08996 * 109.53610 * 6.53286 * 24 7 5 47 47 H 1.09002 * 109.68003 * 246.22753 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0573 -2.4766 6 8 1.0108 1.0872 -2.3632 7 7 1.9843 -0.3916 -3.7003 8 6 1.6033 0.3565 -4.9061 9 6 0.8622 -0.5850 -5.8604 10 6 1.7315 -1.8141 -6.1354 11 6 1.0090 -2.7406 -7.1155 12 1 0.8251 -2.2093 -8.0494 13 6 -0.3242 -3.1839 -6.5099 14 7 1.8412 -3.9170 -7.3793 15 6 1.6915 -4.6133 -8.5489 16 1 0.9601 -4.2950 -9.2770 17 6 2.4797 -5.7283 -8.7987 18 7 3.3714 -6.1159 -7.9116 19 14 2.2758 -6.6777 -10.3945 20 1 1.2152 -6.0420 -11.2167 21 1 3.5576 -6.6665 -11.1443 22 1 1.8924 -8.0798 -10.0907 23 6 1.9911 -2.5609 -4.8251 24 6 2.7456 -1.6415 -3.8589 25 6 2.0400 -0.7214 1.2492 26 9 3.4390 -0.7218 1.2488 27 9 1.5737 -0.0620 2.3915 28 9 1.5737 -2.0403 1.2491 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6054 -1.7196 -1.2954 33 1 3.1263 -0.7993 -1.2058 34 1 2.4981 0.7422 -5.3948 35 1 0.9513 1.1855 -4.6309 36 1 -0.0775 -0.8985 -5.4055 37 1 0.6577 -0.0665 -6.7971 38 1 2.6809 -1.4980 -6.5676 39 1 -0.8391 -3.8435 -7.2082 40 1 -0.1403 -3.7152 -5.5760 41 1 -0.9433 -2.3084 -6.3139 42 1 2.4983 -4.2027 -6.7255 43 1 3.9219 -6.8953 -8.0859 44 1 1.0408 -2.8557 -4.3799 45 1 2.5907 -3.4489 -5.0250 46 1 2.8464 -2.1322 -2.8908 47 1 3.7343 -1.4206 -4.2612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753278414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:21 Heat of formation + Delta-G solvation = -213.060905 kcal Electronic energy + Delta-G solvation = -30468.240900 eV Core-core repulsion = 25848.805844 eV Total energy + Delta-G solvation = -4619.435056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.11343 -48.60176 -48.57298 -41.41082 -39.45389 -36.94272 -36.01653 -34.65925 -32.61550 -31.89602 -30.09503 -28.94963 -27.29213 -26.58678 -25.45432 -24.24755 -23.17602 -22.14251 -20.68201 -19.84099 -19.44589 -19.27605 -19.14154 -18.67751 -17.44280 -16.97822 -16.71473 -16.54331 -15.95062 -15.76112 -15.51619 -15.43326 -15.31469 -15.06113 -15.01810 -14.79233 -14.73508 -14.71404 -14.31961 -14.24334 -14.08895 -13.95586 -13.66537 -13.26573 -13.08066 -12.95688 -12.84725 -12.76917 -12.63333 -12.37631 -12.32455 -12.25258 -12.08765 -11.96770 -11.72767 -11.57787 -11.21730 -11.08985 -10.88869 -10.74203 -9.63081 -8.94444 -7.91169 -5.16992 1.47843 1.48792 1.56137 1.57744 1.66551 2.04145 2.58367 2.78766 2.97433 3.06504 3.42696 3.52142 3.70918 3.81463 3.82682 3.87928 3.96822 4.15398 4.19971 4.29693 4.38016 4.43254 4.50433 4.52808 4.57931 4.68744 4.75542 4.80827 4.84921 4.91184 4.92476 4.97774 5.03153 5.12111 5.15993 5.26157 5.29859 5.37791 5.44771 5.55831 5.62949 5.74254 6.33061 6.39929 7.11640 7.39582 8.18472 8.41324 9.32417 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.002442 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.611869 B =11461.962849 C =12233.905991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 H 0.123 0.877 4 C -0.144 4.144 5 C 0.523 3.477 6 O -0.570 6.570 7 N -0.605 5.605 8 C 0.114 3.886 9 C -0.118 4.118 10 C -0.081 4.081 11 C 0.171 3.829 12 H 0.036 0.964 13 C -0.156 4.156 14 N -0.735 5.735 15 C -0.233 4.233 16 H 0.070 0.930 17 C -0.075 4.075 18 N -0.967 5.967 19 Si 0.964 3.036 20 H -0.270 1.270 21 H -0.295 1.295 22 H -0.296 1.296 23 C -0.124 4.124 24 C 0.109 3.891 25 C 0.457 3.543 26 F -0.186 7.186 27 F -0.186 7.186 28 F -0.185 7.185 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.027 0.973 40 H 0.046 0.954 41 H 0.067 0.933 42 H 0.376 0.624 43 H 0.249 0.751 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.138 14.656 17.560 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.132 4.132 3 H 0.141 0.859 4 C -0.183 4.183 5 C 0.312 3.688 6 O -0.451 6.451 7 N -0.337 5.337 8 C -0.008 4.008 9 C -0.156 4.156 10 C -0.100 4.100 11 C 0.063 3.937 12 H 0.055 0.945 13 C -0.216 4.216 14 N -0.376 5.376 15 C -0.365 4.365 16 H 0.088 0.912 17 C -0.267 4.267 18 N -0.618 5.618 19 Si 0.795 3.205 20 H -0.194 1.194 21 H -0.222 1.222 22 H -0.224 1.224 23 C -0.162 4.162 24 C -0.013 4.013 25 C 0.403 3.597 26 F -0.168 7.168 27 F -0.168 7.168 28 F -0.166 7.166 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.210 0.790 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.125 0.875 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.521 15.141 17.457 23.375 hybrid contribution 0.419 -1.277 -0.670 1.502 sum -3.102 13.864 16.786 21.991 Atomic orbital electron populations 1.21957 0.90996 1.03652 1.04697 1.22122 1.00233 1.01591 0.89210 0.85873 1.21799 1.05134 1.00957 0.90423 1.20500 0.78482 0.85098 0.84717 1.90658 1.41753 1.26109 1.86544 1.48243 1.54890 1.24799 1.05762 1.21606 1.00105 0.94517 0.84559 1.21912 0.98593 0.95310 0.99817 1.21246 0.98738 0.94905 0.95120 1.20428 0.90382 0.87291 0.95614 0.94543 1.22373 0.98546 1.00479 1.00159 1.42686 1.43928 1.30844 1.20182 1.19614 1.14848 1.05925 0.96088 0.91218 1.25422 0.99543 1.00433 1.01339 1.69788 1.27017 1.28252 1.36779 0.85199 0.77049 0.78270 0.80029 1.19422 1.22229 1.22364 1.21887 1.01068 0.98088 0.95173 1.21963 0.94662 0.83283 1.01374 1.20668 0.75230 0.77596 0.86254 1.93183 1.30338 1.96430 1.96811 1.93170 1.88511 1.80828 1.54268 1.93178 1.88445 1.38172 1.96823 0.91286 0.90855 0.89816 0.86167 0.85851 0.90667 0.89456 0.91310 0.89858 0.91948 0.95405 0.93449 0.91422 0.79038 0.94189 0.91365 0.91880 0.87542 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 8.69 71.98 0.63 -1.77 16 2 C -0.11 -1.65 2.01 -10.79 -0.02 -1.67 16 3 H 0.12 1.81 7.96 -2.38 -0.02 1.79 16 4 C -0.14 -2.03 3.29 29.85 0.10 -1.94 16 5 C 0.52 10.34 7.42 87.66 0.65 10.99 16 6 O -0.57 -14.36 13.38 -3.05 -0.04 -14.40 16 7 N -0.60 -11.80 2.98 -818.10 -2.44 -14.24 16 8 C 0.11 2.30 6.42 86.36 0.55 2.85 16 9 C -0.12 -2.58 4.97 30.67 0.15 -2.42 16 10 C -0.08 -2.23 2.14 -10.77 -0.02 -2.26 16 11 C 0.17 6.17 2.72 44.99 0.12 6.29 16 12 H 0.04 1.38 8.08 -2.38 -0.02 1.36 16 13 C -0.16 -5.16 8.79 71.98 0.63 -4.53 16 14 N -0.73 -34.74 5.04 -322.94 -1.63 -36.37 16 15 C -0.23 -12.51 9.93 84.03 0.83 -11.67 16 16 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 17 C -0.08 -4.21 5.50 84.86 0.47 -3.74 16 18 N -0.97 -57.34 13.06 21.65 0.28 -57.06 16 19 Si 0.96 45.49 29.55 68.60 2.03 47.51 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 23 C -0.12 -3.13 4.82 30.69 0.15 -2.99 16 24 C 0.11 2.02 6.36 86.32 0.55 2.57 16 25 C 0.46 7.27 2.69 71.98 0.19 7.46 16 26 F -0.19 -3.13 16.71 44.97 0.75 -2.38 16 27 F -0.19 -3.26 16.80 44.97 0.76 -2.51 16 28 F -0.18 -3.19 16.37 44.97 0.74 -2.46 16 29 H 0.07 0.99 7.80 -2.38 -0.02 0.97 16 30 H 0.07 1.02 7.80 -2.39 -0.02 1.00 16 31 H 0.08 1.59 5.95 -2.39 -0.01 1.58 16 32 H 0.12 1.48 7.50 -2.39 -0.02 1.46 16 33 H 0.12 1.36 7.48 -2.39 -0.02 1.34 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.85 7.00 -2.39 -0.02 1.84 16 36 H 0.07 1.54 6.51 -2.39 -0.02 1.53 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.05 1.56 6.46 -2.38 -0.02 1.55 16 41 H 0.07 1.82 6.46 -2.39 -0.02 1.80 16 42 H 0.38 18.73 6.04 -92.71 -0.56 18.17 16 43 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.07 1.73 6.51 -2.39 -0.02 1.72 16 45 H 0.06 1.94 6.46 -2.39 -0.02 1.93 16 46 H 0.11 1.47 5.97 -2.39 -0.01 1.46 16 47 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -64.42 371.78 5.86 -58.56 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.44 Total: 26.16 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 4.98 Total: -2.82 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -3.79 Total: -107.67 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.04 Total: -14.40 kcal Atomic # 9 Polarization: -9.58 SS G_CDS: 2.24 Total: -7.34 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -64.42 5.86 -58.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753278414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.498 kcal (2) G-P(sol) polarization free energy of solvation -64.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds