Wall clock time and date at job start Sat Apr 11 2020 04:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47092 * 2 1 4 4 C 1.53003 * 109.46960 * 119.99927 * 2 1 3 5 5 C 1.50705 * 109.47018 * 295.00086 * 4 2 1 6 6 O 1.21284 * 120.00096 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99969 * 180.02562 * 5 4 2 8 8 C 1.46923 * 120.63030 * 180.02562 * 7 5 4 9 9 C 1.53191 * 108.77292 * 233.62296 * 8 7 5 10 10 C 1.53031 * 109.31433 * 305.36553 * 9 8 7 11 11 C 1.53004 * 109.46199 * 181.38512 * 10 9 8 12 12 H 1.08995 * 109.47216 * 59.99867 * 11 10 9 13 13 C 1.52999 * 109.47083 * 299.99863 * 11 10 9 14 14 N 1.46498 * 109.47065 * 179.97438 * 11 10 9 15 15 C 1.36943 * 119.99752 * 204.72207 * 14 11 10 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 11 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 11 18 18 N 1.31624 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47213 * 60.00246 * 19 17 15 21 21 H 1.48502 * 109.47317 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47081 * 299.99875 * 19 17 15 23 23 C 1.53038 * 109.54033 * 61.36367 * 10 9 8 24 24 C 1.46922 * 120.62904 * 0.02562 * 7 5 4 25 25 C 1.53002 * 109.47246 * 239.99766 * 2 1 3 26 26 F 1.39897 * 109.46708 * 300.00288 * 25 2 1 27 27 F 1.39895 * 109.46859 * 59.99992 * 25 2 1 28 28 F 1.39893 * 109.46889 * 180.02562 * 25 2 1 29 29 H 1.09004 * 109.47433 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47444 * 300.00397 * 1 2 3 31 31 H 1.09001 * 109.47160 * 60.00056 * 1 2 3 32 32 H 1.08992 * 109.46875 * 175.00346 * 4 2 1 33 33 H 1.09001 * 109.47344 * 54.99868 * 4 2 1 34 34 H 1.09005 * 109.58831 * 113.83815 * 8 7 5 35 35 H 1.08999 * 109.70287 * 353.47906 * 8 7 5 36 36 H 1.09000 * 109.49885 * 185.40858 * 9 8 7 37 37 H 1.09004 * 109.49539 * 65.31870 * 9 8 7 38 38 H 1.09003 * 109.46063 * 301.35614 * 10 9 8 39 39 H 1.09003 * 109.47054 * 59.99725 * 13 11 10 40 40 H 1.08996 * 109.47245 * 179.97438 * 13 11 10 41 41 H 1.08995 * 109.47098 * 300.00077 * 13 11 10 42 42 H 0.97001 * 120.00384 * 25.00562 * 14 11 10 43 43 H 0.96999 * 119.99739 * 180.02562 * 18 17 15 44 44 H 1.09006 * 109.49860 * 58.58550 * 23 10 9 45 45 H 1.08999 * 109.50362 * 178.68305 * 23 10 9 46 46 H 1.09002 * 109.59312 * 246.16097 * 24 7 5 47 47 H 1.08994 * 109.58647 * 6.59357 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0116 1.0875 2.3633 7 7 1.9852 -0.3913 3.7002 8 6 1.6032 0.3561 4.9060 9 6 2.8600 0.6198 5.7414 10 6 3.5685 -0.7072 6.0225 11 6 4.8055 -0.4517 6.8859 12 1 4.5030 0.0054 7.8279 13 6 5.7588 0.4886 6.1456 14 7 5.4836 -1.7220 7.1556 15 6 6.2744 -1.8537 8.2658 16 1 6.3947 -1.0225 8.9448 17 6 6.9215 -3.0555 8.5184 18 7 6.7753 -4.0683 7.6906 19 14 7.9997 -3.2354 10.0331 20 1 7.1835 -3.0044 11.2520 21 1 8.5730 -4.6048 10.0729 22 1 9.1004 -2.2400 9.9783 23 6 3.9934 -1.3507 4.7006 24 6 2.7492 -1.6368 3.8535 25 6 2.0400 -0.7213 -1.2492 26 9 1.5736 -2.0402 -1.2491 27 9 1.5737 -0.0618 -2.3915 28 9 3.4390 -0.7218 -1.2488 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.1262 -0.7994 1.2057 33 1 1.6053 -1.7198 1.2953 34 1 0.8929 -0.2298 5.4895 35 1 1.1479 1.3047 4.6216 36 1 2.5784 1.0888 6.6842 37 1 3.5302 1.2807 5.1916 38 1 2.8893 -1.3768 6.5503 39 1 5.2540 1.4337 5.9452 40 1 6.6398 0.6710 6.7608 41 1 6.0613 0.0314 5.2035 42 1 5.3756 -2.4686 6.5457 43 1 7.2272 -4.9083 7.8673 44 1 4.6529 -0.6713 4.1606 45 1 4.5185 -2.2843 4.9026 46 1 2.1324 -2.3851 4.3512 47 1 3.0515 -2.0032 2.8724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753278488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:25 Heat of formation + Delta-G solvation = -196.319499 kcal Electronic energy + Delta-G solvation = -30439.565127 eV Core-core repulsion = 25820.856033 eV Total energy + Delta-G solvation = -4618.709094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.39386 -47.87332 -47.85269 -40.52412 -38.34068 -35.69327 -35.19664 -33.02020 -31.38021 -30.61003 -28.75278 -27.89966 -26.58905 -25.28104 -23.83353 -23.21077 -22.13635 -21.20365 -19.64350 -18.93522 -18.65911 -18.28377 -17.97888 -17.26144 -16.54058 -16.16587 -15.85206 -15.02743 -14.82478 -14.80445 -14.44643 -14.29361 -14.26741 -14.05215 -14.01027 -13.98044 -13.84441 -13.75341 -13.36885 -13.34540 -13.02640 -12.67058 -12.49993 -12.23131 -12.01585 -11.75328 -11.65275 -11.63786 -11.57022 -11.38223 -11.06517 -10.85428 -10.63732 -10.38075 -10.32182 -10.15612 -9.94628 -9.70795 -9.57272 -8.92912 -8.69924 -6.97798 -5.79308 -3.07144 2.37878 2.40722 2.85196 3.41944 3.46873 3.47325 3.49086 3.67513 3.75373 4.26938 4.42854 4.50341 4.56396 4.76697 4.86044 4.99970 5.03995 5.12440 5.14222 5.16027 5.32982 5.38993 5.47348 5.52416 5.55205 5.59889 5.73736 5.77436 5.89552 5.93578 5.94583 6.08609 6.15517 6.21757 6.26953 6.43240 6.50824 6.63290 6.72730 6.89158 7.12533 7.25727 7.68018 7.96339 8.40433 9.51392 10.09482 10.43854 11.43559 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.018919 B = 0.002437 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.599776 B =11485.374870 C =12312.240763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 H 0.122 0.878 4 C -0.146 4.146 5 C 0.523 3.477 6 O -0.545 6.545 7 N -0.603 5.603 8 C 0.112 3.888 9 C -0.128 4.128 10 C -0.090 4.090 11 C 0.178 3.822 12 H 0.046 0.954 13 C -0.167 4.167 14 N -0.724 5.724 15 C -0.237 4.237 16 H 0.068 0.932 17 C -0.014 4.014 18 N -0.935 5.935 19 Si 0.905 3.095 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.287 1.287 23 C -0.129 4.129 24 C 0.102 3.898 25 C 0.453 3.547 26 F -0.182 7.182 27 F -0.182 7.182 28 F -0.183 7.183 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.049 0.951 41 H 0.047 0.953 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.285 7.407 -16.243 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.137 4.137 3 H 0.140 0.860 4 C -0.185 4.185 5 C 0.311 3.689 6 O -0.424 6.424 7 N -0.336 5.336 8 C -0.010 4.010 9 C -0.167 4.167 10 C -0.109 4.109 11 C 0.068 3.932 12 H 0.064 0.936 13 C -0.227 4.227 14 N -0.367 5.367 15 C -0.368 4.368 16 H 0.086 0.914 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.214 1.214 23 C -0.168 4.168 24 C -0.020 4.020 25 C 0.399 3.601 26 F -0.164 7.164 27 F -0.164 7.164 28 F -0.164 7.164 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.092 0.908 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.507 7.916 -16.151 22.494 hybrid contribution 0.982 -0.683 0.450 1.278 sum -12.525 7.233 -15.701 21.348 Atomic orbital electron populations 1.22002 0.90935 1.03405 1.05184 1.22171 1.00314 1.01690 0.89529 0.85957 1.21761 1.04132 1.00821 0.91829 1.20141 0.79277 0.85291 0.84231 1.90659 1.40877 1.24654 1.86192 1.48136 1.54560 1.25131 1.05757 1.21655 0.97113 0.97257 0.84961 1.22015 0.96415 0.98425 0.99847 1.21388 0.98002 0.95722 0.95821 1.20188 0.89796 0.88305 0.94912 0.93639 1.22534 1.00749 0.98483 1.00930 1.42481 1.56113 1.09743 1.28332 1.19199 1.20300 0.97031 1.00274 0.91359 1.24710 1.01141 0.96251 0.98876 1.69635 1.47718 1.03161 1.37836 0.86292 0.80485 0.76714 0.82838 1.21330 1.21733 1.21360 1.21997 0.96167 1.02708 0.95881 1.21945 0.93566 0.85201 1.01286 1.20644 0.75488 0.77742 0.86261 1.93174 1.88435 1.37947 1.96821 1.93176 1.88473 1.80751 1.53976 1.93195 1.30020 1.96412 1.96792 0.91785 0.88357 0.91424 0.87393 0.87451 0.91508 0.89227 0.90733 0.91185 0.91019 0.94429 0.93146 0.93367 0.78211 0.93507 0.91287 0.89422 0.90829 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 8.69 37.16 0.32 -0.95 16 2 C -0.12 -0.98 2.01 -90.62 -0.18 -1.16 16 3 H 0.12 1.04 7.95 -51.93 -0.41 0.63 16 4 C -0.15 -1.22 3.28 -27.88 -0.09 -1.31 16 5 C 0.52 5.74 7.41 -10.98 -0.08 5.66 16 6 O -0.55 -7.30 13.38 5.55 0.07 -7.23 16 7 N -0.60 -6.57 2.97 -172.76 -0.51 -7.09 16 8 C 0.11 1.24 6.43 -3.71 -0.02 1.22 16 9 C -0.13 -1.54 4.96 -26.62 -0.13 -1.67 16 10 C -0.09 -1.30 2.14 -90.58 -0.19 -1.49 16 11 C 0.18 3.26 2.72 -67.93 -0.18 3.08 16 12 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 13 C -0.17 -2.87 8.79 37.16 0.33 -2.54 16 14 N -0.72 -17.04 5.04 -53.43 -0.27 -17.31 16 15 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 19 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.13 -1.72 4.82 -26.60 -0.13 -1.85 16 24 C 0.10 1.06 6.34 -3.70 -0.02 1.04 16 25 C 0.45 4.05 2.69 37.16 0.10 4.15 16 26 F -0.18 -1.70 16.37 2.25 0.04 -1.66 16 27 F -0.18 -1.74 16.80 2.25 0.04 -1.70 16 28 F -0.18 -1.80 16.71 2.25 0.04 -1.76 16 29 H 0.06 0.47 7.80 -51.93 -0.41 0.06 16 30 H 0.10 0.94 5.95 -51.93 -0.31 0.63 16 31 H 0.07 0.50 7.80 -51.93 -0.41 0.09 16 32 H 0.11 0.83 7.21 -51.93 -0.37 0.46 16 33 H 0.11 0.75 7.75 -51.93 -0.40 0.35 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.04 7.01 -51.93 -0.36 0.67 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.88 6.51 -51.93 -0.34 0.54 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.04 0.55 6.46 -51.93 -0.34 0.21 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.83 6.46 -51.93 -0.34 0.49 16 42 H 0.38 9.40 6.04 -40.82 -0.25 9.15 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.07 0.94 6.51 -51.93 -0.34 0.60 16 45 H 0.09 1.36 6.46 -51.93 -0.34 1.02 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -30.20 371.70 -6.82 -37.02 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.99 Total: 6.59 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -0.54 Total: -2.82 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.06 Total: -51.02 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: 0.07 Total: -7.23 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.11 Total: -5.13 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.20 -6.82 -37.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753278488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.301 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds