Wall clock time and date at job start Sat Apr 11 2020 04:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47092 * 2 1 4 4 C 1.53003 * 109.46960 * 119.99927 * 2 1 3 5 5 C 1.50705 * 109.47018 * 295.00086 * 4 2 1 6 6 O 1.21284 * 120.00096 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99969 * 180.02562 * 5 4 2 8 8 C 1.46923 * 120.63030 * 180.02562 * 7 5 4 9 9 C 1.53191 * 108.77292 * 233.62296 * 8 7 5 10 10 C 1.53031 * 109.31433 * 305.36553 * 9 8 7 11 11 C 1.53004 * 109.46199 * 181.38512 * 10 9 8 12 12 H 1.08995 * 109.47216 * 59.99867 * 11 10 9 13 13 C 1.52999 * 109.47083 * 299.99863 * 11 10 9 14 14 N 1.46498 * 109.47065 * 179.97438 * 11 10 9 15 15 C 1.36943 * 119.99752 * 204.72207 * 14 11 10 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 11 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 11 18 18 N 1.31624 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47213 * 60.00246 * 19 17 15 21 21 H 1.48502 * 109.47317 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47081 * 299.99875 * 19 17 15 23 23 C 1.53038 * 109.54033 * 61.36367 * 10 9 8 24 24 C 1.46922 * 120.62904 * 0.02562 * 7 5 4 25 25 C 1.53002 * 109.47246 * 239.99766 * 2 1 3 26 26 F 1.39897 * 109.46708 * 300.00288 * 25 2 1 27 27 F 1.39895 * 109.46859 * 59.99992 * 25 2 1 28 28 F 1.39893 * 109.46889 * 180.02562 * 25 2 1 29 29 H 1.09004 * 109.47433 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47444 * 300.00397 * 1 2 3 31 31 H 1.09001 * 109.47160 * 60.00056 * 1 2 3 32 32 H 1.08992 * 109.46875 * 175.00346 * 4 2 1 33 33 H 1.09001 * 109.47344 * 54.99868 * 4 2 1 34 34 H 1.09005 * 109.58831 * 113.83815 * 8 7 5 35 35 H 1.08999 * 109.70287 * 353.47906 * 8 7 5 36 36 H 1.09000 * 109.49885 * 185.40858 * 9 8 7 37 37 H 1.09004 * 109.49539 * 65.31870 * 9 8 7 38 38 H 1.09003 * 109.46063 * 301.35614 * 10 9 8 39 39 H 1.09003 * 109.47054 * 59.99725 * 13 11 10 40 40 H 1.08996 * 109.47245 * 179.97438 * 13 11 10 41 41 H 1.08995 * 109.47098 * 300.00077 * 13 11 10 42 42 H 0.97001 * 120.00384 * 25.00562 * 14 11 10 43 43 H 0.96999 * 119.99739 * 180.02562 * 18 17 15 44 44 H 1.09006 * 109.49860 * 58.58550 * 23 10 9 45 45 H 1.08999 * 109.50362 * 178.68305 * 23 10 9 46 46 H 1.09002 * 109.59312 * 246.16097 * 24 7 5 47 47 H 1.08994 * 109.58647 * 6.59357 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0116 1.0875 2.3633 7 7 1.9852 -0.3913 3.7002 8 6 1.6032 0.3561 4.9060 9 6 2.8600 0.6198 5.7414 10 6 3.5685 -0.7072 6.0225 11 6 4.8055 -0.4517 6.8859 12 1 4.5030 0.0054 7.8279 13 6 5.7588 0.4886 6.1456 14 7 5.4836 -1.7220 7.1556 15 6 6.2744 -1.8537 8.2658 16 1 6.3947 -1.0225 8.9448 17 6 6.9215 -3.0555 8.5184 18 7 6.7753 -4.0683 7.6906 19 14 7.9997 -3.2354 10.0331 20 1 7.1835 -3.0044 11.2520 21 1 8.5730 -4.6048 10.0729 22 1 9.1004 -2.2400 9.9783 23 6 3.9934 -1.3507 4.7006 24 6 2.7492 -1.6368 3.8535 25 6 2.0400 -0.7213 -1.2492 26 9 1.5736 -2.0402 -1.2491 27 9 1.5737 -0.0618 -2.3915 28 9 3.4390 -0.7218 -1.2488 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.1262 -0.7994 1.2057 33 1 1.6053 -1.7198 1.2953 34 1 0.8929 -0.2298 5.4895 35 1 1.1479 1.3047 4.6216 36 1 2.5784 1.0888 6.6842 37 1 3.5302 1.2807 5.1916 38 1 2.8893 -1.3768 6.5503 39 1 5.2540 1.4337 5.9452 40 1 6.6398 0.6710 6.7608 41 1 6.0613 0.0314 5.2035 42 1 5.3756 -2.4686 6.5457 43 1 7.2272 -4.9083 7.8673 44 1 4.6529 -0.6713 4.1606 45 1 4.5185 -2.2843 4.9026 46 1 2.1324 -2.3851 4.3512 47 1 3.0515 -2.0032 2.8724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753278488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:24 Heat of formation + Delta-G solvation = -212.813925 kcal Electronic energy + Delta-G solvation = -30440.280379 eV Core-core repulsion = 25820.856033 eV Total energy + Delta-G solvation = -4619.424346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.11486 -48.60540 -48.57231 -41.42519 -39.45787 -36.95080 -36.01719 -34.66245 -32.62282 -31.89676 -30.09269 -28.95142 -27.28832 -26.58742 -25.45049 -24.25515 -23.15635 -22.16842 -20.69289 -19.80965 -19.45621 -19.27414 -19.13997 -18.68717 -17.41460 -16.98607 -16.73334 -16.62660 -15.96224 -15.66973 -15.53977 -15.43510 -15.28342 -15.02729 -14.98897 -14.81894 -14.73330 -14.71288 -14.42386 -14.24219 -14.03205 -13.99705 -13.68607 -13.22740 -13.02995 -12.94971 -12.88138 -12.74770 -12.62991 -12.37600 -12.30217 -12.25491 -12.18338 -11.96575 -11.73140 -11.57190 -11.22587 -11.09688 -10.87038 -10.73393 -9.62887 -8.94551 -7.90834 -5.16861 1.48497 1.50013 1.56012 1.57079 1.65489 2.04714 2.58660 2.78838 2.97501 3.06541 3.42604 3.52257 3.70476 3.80900 3.84721 3.86944 3.96788 4.15211 4.20243 4.29550 4.37725 4.43095 4.51287 4.52433 4.57728 4.68544 4.75313 4.81301 4.84804 4.91167 4.92936 4.97486 5.02977 5.11856 5.15606 5.26521 5.29619 5.37555 5.44563 5.55410 5.62941 5.73820 6.33074 6.39978 7.11684 7.39609 8.18562 8.41522 9.32370 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.018919 B = 0.002437 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.599776 B =11485.374870 C =12312.240763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 H 0.120 0.880 4 C -0.144 4.144 5 C 0.522 3.478 6 O -0.570 6.570 7 N -0.604 5.604 8 C 0.115 3.885 9 C -0.118 4.118 10 C -0.080 4.080 11 C 0.171 3.829 12 H 0.037 0.963 13 C -0.156 4.156 14 N -0.735 5.735 15 C -0.236 4.236 16 H 0.070 0.930 17 C -0.074 4.074 18 N -0.967 5.967 19 Si 0.965 3.035 20 H -0.280 1.280 21 H -0.297 1.297 22 H -0.282 1.282 23 C -0.125 4.125 24 C 0.109 3.891 25 C 0.456 3.544 26 F -0.183 7.183 27 F -0.186 7.186 28 F -0.188 7.188 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.027 0.973 41 H 0.046 0.954 42 H 0.376 0.624 43 H 0.250 0.750 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.039 7.984 -16.833 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.133 4.133 3 H 0.138 0.862 4 C -0.183 4.183 5 C 0.312 3.688 6 O -0.451 6.451 7 N -0.336 5.336 8 C -0.007 4.007 9 C -0.157 4.157 10 C -0.100 4.100 11 C 0.063 3.937 12 H 0.055 0.945 13 C -0.216 4.216 14 N -0.376 5.376 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.267 4.267 18 N -0.618 5.618 19 Si 0.795 3.205 20 H -0.206 1.206 21 H -0.223 1.223 22 H -0.209 1.209 23 C -0.163 4.163 24 C -0.013 4.013 25 C 0.402 3.598 26 F -0.165 7.165 27 F -0.168 7.168 28 F -0.169 7.169 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.210 0.790 43 H 0.058 0.942 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.099 0.901 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.275 8.536 -16.741 23.599 hybrid contribution 1.180 -0.782 0.619 1.545 sum -13.096 7.754 -16.121 22.170 Atomic orbital electron populations 1.21951 0.90693 1.03799 1.04695 1.22126 1.00447 1.01477 0.89204 0.86210 1.21801 1.04876 1.01206 0.90425 1.20511 0.78621 0.85004 0.84701 1.90657 1.42016 1.25855 1.86532 1.48175 1.54458 1.25180 1.05824 1.21607 0.96591 0.97503 0.85031 1.21918 0.96566 0.96674 1.00534 1.21241 0.96021 0.97146 0.95572 1.20424 0.91275 0.86415 0.95589 0.94526 1.22378 0.99655 0.99508 1.00041 1.42672 1.56126 1.11406 1.27421 1.19549 1.19648 0.96774 1.00824 0.91248 1.25427 1.03165 0.96339 1.01726 1.69777 1.49126 1.03390 1.39547 0.85333 0.78963 0.76197 0.80006 1.20629 1.22298 1.20863 1.21892 0.97424 1.01240 0.95732 1.21919 0.92173 0.85106 1.02096 1.20673 0.75180 0.77645 0.86266 1.93173 1.88412 1.38062 1.96824 1.93169 1.88494 1.80839 1.54279 1.93187 1.30499 1.96432 1.96811 0.90957 0.89768 0.90933 0.86364 0.85651 0.90562 0.89431 0.89837 0.91405 0.91875 0.91450 0.95425 0.93501 0.79037 0.94157 0.91477 0.91883 0.90123 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.69 71.98 0.63 -1.60 16 2 C -0.11 -1.67 2.01 -10.79 -0.02 -1.69 16 3 H 0.12 1.86 7.95 -2.39 -0.02 1.84 16 4 C -0.14 -2.04 3.28 29.85 0.10 -1.94 16 5 C 0.52 10.34 7.41 87.66 0.65 10.99 16 6 O -0.57 -14.37 13.38 -3.04 -0.04 -14.41 16 7 N -0.60 -11.80 2.97 -818.88 -2.43 -14.23 16 8 C 0.11 2.31 6.43 86.36 0.56 2.86 16 9 C -0.12 -2.61 4.96 30.67 0.15 -2.46 16 10 C -0.08 -2.24 2.14 -10.77 -0.02 -2.26 16 11 C 0.17 6.21 2.72 44.99 0.12 6.33 16 12 H 0.04 1.39 8.08 -2.39 -0.02 1.37 16 13 C -0.16 -5.23 8.79 71.98 0.63 -4.59 16 14 N -0.73 -34.88 5.04 -322.94 -1.63 -36.51 16 15 C -0.24 -12.73 9.93 84.03 0.83 -11.90 16 16 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 17 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 18 N -0.97 -57.45 13.06 21.65 0.28 -57.16 16 19 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 C -0.12 -3.18 4.82 30.68 0.15 -3.03 16 24 C 0.11 2.02 6.34 86.37 0.55 2.57 16 25 C 0.46 7.33 2.69 71.98 0.19 7.52 16 26 F -0.18 -3.03 16.37 44.97 0.74 -2.30 16 27 F -0.19 -3.29 16.80 44.97 0.76 -2.53 16 28 F -0.19 -3.36 16.71 44.97 0.75 -2.61 16 29 H 0.07 0.91 7.80 -2.39 -0.02 0.89 16 30 H 0.08 1.51 5.95 -2.39 -0.01 1.49 16 31 H 0.07 0.96 7.80 -2.39 -0.02 0.94 16 32 H 0.12 1.48 7.21 -2.39 -0.02 1.47 16 33 H 0.13 1.36 7.75 -2.39 -0.02 1.34 16 34 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.09 1.86 7.01 -2.39 -0.02 1.84 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.54 6.51 -2.38 -0.02 1.53 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 1.84 6.46 -2.39 -0.02 1.82 16 40 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 1.57 6.46 -2.39 -0.02 1.55 16 42 H 0.38 18.80 6.04 -92.71 -0.56 18.24 16 43 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 44 H 0.07 1.73 6.51 -2.38 -0.02 1.71 16 45 H 0.06 1.95 6.46 -2.39 -0.02 1.94 16 46 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.11 1.48 5.93 -2.39 -0.01 1.46 16 Total: -1.00 -64.54 371.70 5.87 -58.68 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.44 Total: 26.44 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 4.98 Total: -2.89 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -3.78 Total: -107.91 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.04 Total: -14.41 kcal Atomic # 9 Polarization: -9.68 SS G_CDS: 2.24 Total: -7.44 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -64.54 5.87 -58.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753278488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.139 kcal (2) G-P(sol) polarization free energy of solvation -64.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds