Wall clock time and date at job start Sat Apr 11 2020 04:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47120 * 59.99555 * 9 7 5 11 11 H 1.48500 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46925 * 300.00019 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 C 1.53042 * 109.46398 * 180.02562 * 13 2 1 15 15 C 1.53198 * 109.31465 * 178.60163 * 14 13 2 16 16 N 1.46935 * 108.76062 * 54.65546 * 15 14 13 17 17 C 1.34771 * 120.62425 * 126.36763 * 16 15 14 18 18 O 1.21287 * 119.99453 * 180.02562 * 17 16 15 19 19 C 1.50701 * 120.00597 * 0.02562 * 17 16 15 20 20 C 1.53003 * 109.47204 * 180.02562 * 19 17 16 21 21 H 1.09003 * 109.46737 * 55.00709 * 20 19 17 22 22 C 1.52994 * 109.47271 * 295.00470 * 20 19 17 23 23 C 1.53003 * 109.46798 * 174.99883 * 20 19 17 24 24 F 1.39897 * 109.46947 * 60.00496 * 23 20 19 25 25 F 1.39904 * 109.46793 * 180.02562 * 23 20 19 26 26 F 1.39895 * 109.47348 * 300.00590 * 23 20 19 27 27 C 1.46925 * 118.74051 * 306.37966 * 16 15 14 28 28 C 1.53049 * 109.46109 * 59.97287 * 13 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 33 33 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46383 * 300.00050 * 13 2 1 35 35 H 1.08999 * 109.49617 * 298.56655 * 14 13 2 36 36 H 1.08997 * 109.50004 * 58.66098 * 14 13 2 37 37 H 1.08993 * 109.59764 * 294.87180 * 15 14 13 38 38 H 1.08991 * 109.70129 * 174.50330 * 15 14 13 39 39 H 1.09000 * 109.47084 * 300.00500 * 19 17 16 40 40 H 1.09002 * 109.46585 * 60.00530 * 19 17 16 41 41 H 1.08995 * 109.47239 * 299.99544 * 22 20 19 42 42 H 1.09000 * 109.47225 * 60.00139 * 22 20 19 43 43 H 1.09002 * 109.46728 * 179.97438 * 22 20 19 44 44 H 1.08995 * 109.58787 * 293.82564 * 27 16 15 45 45 H 1.08995 * 109.70361 * 173.46863 * 27 16 15 46 46 H 1.08997 * 109.49255 * 301.34180 * 28 13 2 47 47 H 1.09002 * 109.49165 * 61.40168 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.4665 0.8066 5.5284 11 1 3.2981 -0.6485 6.1687 12 1 3.7443 1.3923 4.9378 13 6 2.0400 -0.7212 -1.2491 14 6 3.5705 -0.7217 -1.2485 15 6 4.0774 -1.4749 -2.4825 16 7 3.4748 -0.8769 -3.6818 17 6 4.2484 -0.4575 -4.7025 18 8 3.7389 0.0349 -5.6869 19 6 5.7464 -0.6002 -4.6209 20 6 6.3816 -0.0506 -5.8997 21 1 6.0508 0.9760 -6.0575 22 6 5.9572 -0.9119 -7.0908 23 6 7.9054 -0.0804 -5.7658 24 9 8.3300 -1.3979 -5.5633 25 9 8.4862 0.4227 -6.9350 26 9 8.2934 0.7071 -4.6766 27 6 2.0129 -0.7448 -3.7469 28 6 1.5292 0.0000 -2.4987 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 2.2490 -1.6317 1.1527 33 1 3.2468 -2.3964 4.2425 34 1 1.6767 -1.7489 -1.2490 35 1 3.9345 0.3054 -1.2740 36 1 3.9338 -1.2146 -0.3469 37 1 3.7905 -2.5241 -2.4138 38 1 5.1629 -1.3959 -2.5409 39 1 6.1183 -0.0417 -3.7618 40 1 6.0055 -1.6531 -4.5096 41 1 6.2880 -1.9384 -6.9331 42 1 4.8716 -0.8906 -7.1862 43 1 6.4094 -0.5200 -8.0019 44 1 1.5577 -1.7345 -3.7813 45 1 1.7341 -0.1832 -4.6384 46 1 0.4395 0.0206 -2.4868 47 1 1.9123 1.0204 -2.5118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753278490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:28 Heat of formation + Delta-G solvation = -198.754749 kcal Electronic energy + Delta-G solvation = -30369.687715 eV Core-core repulsion = 25750.873020 eV Total energy + Delta-G solvation = -4618.814695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.37891 -47.85693 -47.83954 -40.48705 -38.22451 -35.67374 -35.19580 -33.00314 -31.29057 -30.81531 -28.80417 -27.89560 -26.56936 -25.30213 -23.80936 -22.89233 -21.93774 -20.97222 -19.73120 -19.20447 -18.74575 -18.46683 -18.01423 -17.16520 -16.53072 -16.15268 -15.83253 -15.06506 -14.82248 -14.78894 -14.28031 -14.24058 -14.08436 -14.01809 -13.97884 -13.96642 -13.90344 -13.68808 -13.49020 -13.32082 -12.79504 -12.60862 -12.54806 -12.32700 -12.06865 -11.73317 -11.67276 -11.61441 -11.56468 -11.19912 -11.02544 -10.87194 -10.74805 -10.32212 -10.30457 -10.21895 -9.92149 -9.77090 -9.60446 -8.92860 -8.67488 -6.97484 -5.79202 -3.07113 2.39360 2.42282 2.86982 3.41787 3.46979 3.47231 3.50531 3.69009 3.76814 4.28710 4.44651 4.51864 4.56203 4.79329 4.88356 5.00075 5.04258 5.14023 5.16410 5.18251 5.33029 5.41381 5.49868 5.51792 5.56425 5.62949 5.72568 5.87582 5.88023 5.92850 5.98316 6.07676 6.16716 6.28163 6.36963 6.44138 6.50523 6.62495 6.74600 6.91309 7.10026 7.27332 7.67954 7.97925 8.39941 9.51149 10.08961 10.43745 11.43411 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.002630 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.701192 B =10645.121802 C =11967.803785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.723 5.723 5 C -0.236 4.236 6 H 0.068 0.932 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.090 4.090 14 C -0.123 4.123 15 C 0.102 3.898 16 N -0.604 5.604 17 C 0.523 3.477 18 O -0.546 6.546 19 C -0.146 4.146 20 C -0.117 4.117 21 H 0.122 0.878 22 C -0.158 4.158 23 C 0.453 3.547 24 F -0.182 7.182 25 F -0.183 7.183 26 F -0.183 7.183 27 C 0.112 3.888 28 C -0.128 4.128 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.786 0.778 -20.876 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.367 4.367 6 H 0.086 0.914 7 C -0.209 4.209 8 N -0.583 5.583 9 Si 0.735 3.265 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.109 4.109 14 C -0.162 4.162 15 C -0.020 4.020 16 N -0.336 5.336 17 C 0.311 3.689 18 O -0.425 6.425 19 C -0.185 4.185 20 C -0.137 4.137 21 H 0.140 0.860 22 C -0.215 4.215 23 C 0.399 3.601 24 F -0.164 7.164 25 F -0.164 7.164 26 F -0.164 7.164 27 C -0.010 4.010 28 C -0.167 4.167 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.216 0.784 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.097 0.903 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.571 1.143 -21.224 21.973 hybrid contribution 0.472 0.138 1.260 1.353 sum 6.043 1.282 -19.964 20.898 Atomic orbital electron populations 1.22498 0.99540 1.00752 0.99863 1.20209 0.91598 0.95315 0.86068 0.93751 1.42405 1.78117 1.10601 1.05284 1.19176 1.36358 0.93765 0.87412 0.91415 1.24699 1.02319 0.95941 0.97932 1.69636 1.51075 1.08594 1.28964 0.86314 0.77756 0.78634 0.83756 1.21379 1.21746 1.21326 1.21381 0.94900 0.99956 0.94685 1.21900 0.96132 1.00996 0.97133 1.21970 0.98027 0.97617 0.84433 1.48164 1.07375 1.60461 1.17638 1.20142 0.88547 0.77657 0.82597 1.90657 1.75281 1.45134 1.31388 1.21760 0.93798 1.04709 0.98272 1.22170 0.86998 1.05924 0.98605 0.85959 1.21999 1.05307 0.98755 0.95452 1.20648 0.92443 0.73503 0.73546 1.93173 1.91934 1.36472 1.94799 1.93177 1.86791 1.87464 1.48960 1.93197 1.92867 1.74792 1.55548 1.21650 0.78794 1.00874 0.99640 1.22020 1.01236 0.99630 0.93792 0.93597 0.94307 0.93025 0.78352 0.93519 0.91359 0.91872 0.88789 0.90942 0.89999 0.87373 0.87467 0.91792 0.88357 0.91437 0.91534 0.89253 0.90336 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.14 37.16 0.34 -2.50 16 2 C 0.18 3.24 2.47 -67.94 -0.17 3.08 16 3 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 4 N -0.72 -16.80 4.41 -53.43 -0.24 -17.04 16 5 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 6 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.15 13.06 55.49 0.72 -26.43 16 9 Si 0.90 21.91 29.55 -169.99 -5.02 16.88 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 C -0.09 -1.29 1.79 -90.58 -0.16 -1.45 16 14 C -0.12 -1.71 5.22 -26.61 -0.14 -1.85 16 15 C 0.10 1.09 6.34 -3.70 -0.02 1.06 16 16 N -0.60 -6.71 2.97 -172.77 -0.51 -7.22 16 17 C 0.52 5.86 7.42 -10.99 -0.08 5.77 16 18 O -0.55 -7.41 13.38 5.55 0.07 -7.33 16 19 C -0.15 -1.25 3.28 -27.88 -0.09 -1.35 16 20 C -0.12 -1.00 2.01 -90.62 -0.18 -1.18 16 21 H 0.12 1.07 7.96 -51.93 -0.41 0.65 16 22 C -0.16 -1.29 8.69 37.15 0.32 -0.97 16 23 C 0.45 4.14 2.69 37.16 0.10 4.24 16 24 F -0.18 -1.74 16.37 2.25 0.04 -1.70 16 25 F -0.18 -1.78 16.80 2.25 0.04 -1.74 16 26 F -0.18 -1.85 16.71 2.25 0.04 -1.81 16 27 C 0.11 1.25 6.43 -3.71 -0.02 1.23 16 28 C -0.13 -1.54 5.04 -26.61 -0.13 -1.68 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.38 9.44 7.58 -40.82 -0.31 9.13 16 33 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.55 7.41 -51.93 -0.38 1.17 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 39 H 0.11 0.87 7.21 -51.93 -0.37 0.50 16 40 H 0.11 0.78 7.74 -51.93 -0.40 0.38 16 41 H 0.06 0.48 7.80 -51.93 -0.41 0.07 16 42 H 0.10 0.95 5.95 -51.93 -0.31 0.65 16 43 H 0.07 0.50 7.80 -51.93 -0.41 0.10 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.04 7.01 -51.93 -0.36 0.68 16 46 H 0.08 0.89 6.36 -51.93 -0.33 0.56 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -29.72 376.90 -6.93 -36.65 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.26 Total: 6.50 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.49 Total: -2.45 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.02 Total: -50.69 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.07 Total: -7.33 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.11 Total: -5.25 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.72 -6.93 -36.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753278490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.104 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds