Wall clock time and date at job start Sat Apr 11 2020 04:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47120 * 59.99555 * 9 7 5 11 11 H 1.48500 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46925 * 300.00019 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 C 1.53042 * 109.46398 * 180.02562 * 13 2 1 15 15 C 1.53198 * 109.31465 * 178.60163 * 14 13 2 16 16 N 1.46935 * 108.76062 * 54.65546 * 15 14 13 17 17 C 1.34771 * 120.62425 * 126.36763 * 16 15 14 18 18 O 1.21287 * 119.99453 * 180.02562 * 17 16 15 19 19 C 1.50701 * 120.00597 * 0.02562 * 17 16 15 20 20 C 1.53003 * 109.47204 * 180.02562 * 19 17 16 21 21 H 1.09003 * 109.46737 * 55.00709 * 20 19 17 22 22 C 1.52994 * 109.47271 * 295.00470 * 20 19 17 23 23 C 1.53003 * 109.46798 * 174.99883 * 20 19 17 24 24 F 1.39897 * 109.46947 * 60.00496 * 23 20 19 25 25 F 1.39904 * 109.46793 * 180.02562 * 23 20 19 26 26 F 1.39895 * 109.47348 * 300.00590 * 23 20 19 27 27 C 1.46925 * 118.74051 * 306.37966 * 16 15 14 28 28 C 1.53049 * 109.46109 * 59.97287 * 13 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 33 33 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46383 * 300.00050 * 13 2 1 35 35 H 1.08999 * 109.49617 * 298.56655 * 14 13 2 36 36 H 1.08997 * 109.50004 * 58.66098 * 14 13 2 37 37 H 1.08993 * 109.59764 * 294.87180 * 15 14 13 38 38 H 1.08991 * 109.70129 * 174.50330 * 15 14 13 39 39 H 1.09000 * 109.47084 * 300.00500 * 19 17 16 40 40 H 1.09002 * 109.46585 * 60.00530 * 19 17 16 41 41 H 1.08995 * 109.47239 * 299.99544 * 22 20 19 42 42 H 1.09000 * 109.47225 * 60.00139 * 22 20 19 43 43 H 1.09002 * 109.46728 * 179.97438 * 22 20 19 44 44 H 1.08995 * 109.58787 * 293.82564 * 27 16 15 45 45 H 1.08995 * 109.70361 * 173.46863 * 27 16 15 46 46 H 1.08997 * 109.49255 * 301.34180 * 28 13 2 47 47 H 1.09002 * 109.49165 * 61.40168 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.4665 0.8066 5.5284 11 1 3.2981 -0.6485 6.1687 12 1 3.7443 1.3923 4.9378 13 6 2.0400 -0.7212 -1.2491 14 6 3.5705 -0.7217 -1.2485 15 6 4.0774 -1.4749 -2.4825 16 7 3.4748 -0.8769 -3.6818 17 6 4.2484 -0.4575 -4.7025 18 8 3.7389 0.0349 -5.6869 19 6 5.7464 -0.6002 -4.6209 20 6 6.3816 -0.0506 -5.8997 21 1 6.0508 0.9760 -6.0575 22 6 5.9572 -0.9119 -7.0908 23 6 7.9054 -0.0804 -5.7658 24 9 8.3300 -1.3979 -5.5633 25 9 8.4862 0.4227 -6.9350 26 9 8.2934 0.7071 -4.6766 27 6 2.0129 -0.7448 -3.7469 28 6 1.5292 0.0000 -2.4987 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 2.2490 -1.6317 1.1527 33 1 3.2468 -2.3964 4.2425 34 1 1.6767 -1.7489 -1.2490 35 1 3.9345 0.3054 -1.2740 36 1 3.9338 -1.2146 -0.3469 37 1 3.7905 -2.5241 -2.4138 38 1 5.1629 -1.3959 -2.5409 39 1 6.1183 -0.0417 -3.7618 40 1 6.0055 -1.6531 -4.5096 41 1 6.2880 -1.9384 -6.9331 42 1 4.8716 -0.8906 -7.1862 43 1 6.4094 -0.5200 -8.0019 44 1 1.5577 -1.7345 -3.7813 45 1 1.7341 -0.1832 -4.6384 46 1 0.4395 0.0206 -2.4868 47 1 1.9123 1.0204 -2.5118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753278490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:27 Heat of formation + Delta-G solvation = -214.639385 kcal Electronic energy + Delta-G solvation = -30370.376524 eV Core-core repulsion = 25750.873020 eV Total energy + Delta-G solvation = -4619.503504 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.12210 -48.61098 -48.58160 -41.40047 -39.34766 -36.96716 -36.02650 -34.63529 -32.59408 -32.03842 -30.21178 -28.91831 -27.28545 -26.56729 -25.43396 -23.97785 -22.86168 -22.02558 -21.06760 -20.10115 -19.54265 -19.30639 -19.04235 -18.69797 -17.43952 -17.00148 -16.71820 -16.68872 -15.77750 -15.60818 -15.53781 -15.47252 -15.08460 -15.03564 -14.98726 -14.78112 -14.74212 -14.64275 -14.62011 -14.21201 -14.02864 -13.83124 -13.68712 -13.41240 -13.16366 -12.96264 -12.84109 -12.72573 -12.40978 -12.33645 -12.30739 -12.24110 -12.20612 -12.05438 -11.79966 -11.46243 -11.31820 -11.16527 -10.89289 -10.72370 -9.62208 -8.93061 -7.89822 -5.15611 1.48751 1.49780 1.55818 1.56340 1.64956 2.04615 2.58966 2.78120 2.96732 3.05810 3.43884 3.51812 3.70303 3.79991 3.83720 3.86273 3.94689 4.16753 4.21602 4.27959 4.41979 4.47509 4.50349 4.52948 4.58455 4.63722 4.80012 4.82400 4.85040 4.92042 4.92602 4.96071 5.07886 5.11533 5.16406 5.26228 5.28343 5.39404 5.50896 5.54558 5.64947 5.71168 6.33363 6.39355 7.11118 7.40049 8.18354 8.41428 9.33152 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.002630 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.701192 B =10645.121802 C =11967.803785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.172 3.828 3 H 0.033 0.967 4 N -0.731 5.731 5 C -0.232 4.232 6 H 0.068 0.932 7 C -0.072 4.072 8 N -0.966 5.966 9 Si 0.962 3.038 10 H -0.283 1.283 11 H -0.297 1.297 12 H -0.280 1.280 13 C -0.080 4.080 14 C -0.119 4.119 15 C 0.110 3.890 16 N -0.605 5.605 17 C 0.522 3.478 18 O -0.570 6.570 19 C -0.144 4.144 20 C -0.113 4.113 21 H 0.119 0.881 22 C -0.154 4.154 23 C 0.456 3.544 24 F -0.183 7.183 25 F -0.186 7.186 26 F -0.188 7.188 27 C 0.115 3.885 28 C -0.118 4.118 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.028 0.972 32 H 0.374 0.626 33 H 0.249 0.751 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.853 0.939 -22.112 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.064 3.936 3 H 0.051 0.949 4 N -0.371 5.371 5 C -0.364 4.364 6 H 0.086 0.914 7 C -0.264 4.264 8 N -0.617 5.617 9 Si 0.792 3.208 10 H -0.209 1.209 11 H -0.223 1.223 12 H -0.207 1.207 13 C -0.100 4.100 14 C -0.157 4.157 15 C -0.012 4.012 16 N -0.337 5.337 17 C 0.311 3.689 18 O -0.451 6.451 19 C -0.183 4.183 20 C -0.132 4.132 21 H 0.137 0.863 22 C -0.211 4.211 23 C 0.402 3.598 24 F -0.164 7.164 25 F -0.168 7.168 26 F -0.170 7.170 27 C -0.008 4.008 28 C -0.156 4.156 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.206 0.794 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.134 0.866 40 H 0.144 0.856 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.620 1.337 -22.489 23.219 hybrid contribution 0.422 0.143 1.578 1.640 sum 6.042 1.480 -20.911 21.817 Atomic orbital electron populations 1.22368 0.98176 1.00797 1.00442 1.20439 0.92421 0.94708 0.86023 0.94905 1.42552 1.78305 1.10253 1.05994 1.19494 1.34496 0.93871 0.88584 0.91409 1.25381 1.03387 0.96794 1.00878 1.69774 1.52838 1.09882 1.29245 0.85378 0.77724 0.77449 0.80220 1.20947 1.22339 1.20679 1.21256 0.95254 0.99661 0.93796 1.21774 0.95774 1.00561 0.97600 1.21918 0.99214 0.97440 0.82654 1.48206 1.07454 1.60403 1.17666 1.20502 0.89446 0.76867 0.82061 1.90655 1.75944 1.46152 1.32315 1.21796 0.91894 1.06042 0.98581 1.22126 0.86418 1.05917 0.98787 0.86251 1.21948 1.04326 0.99246 0.95573 1.20678 0.92591 0.73299 0.73208 1.93172 1.91992 1.36500 1.94785 1.93171 1.86896 1.87525 1.49160 1.93187 1.92961 1.74986 1.55852 1.21630 0.79008 1.01392 0.98720 1.21923 1.01894 0.98943 0.92868 0.93774 0.90848 0.95303 0.79393 0.94200 0.91298 0.92808 0.91774 0.89861 0.87846 0.86576 0.85642 0.90926 0.89731 0.90908 0.90206 0.89480 0.89102 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.20 9.14 71.98 0.66 -4.55 16 2 C 0.17 6.21 2.47 44.99 0.11 6.32 16 3 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 4 N -0.73 -34.32 4.41 -322.95 -1.42 -35.74 16 5 C -0.23 -12.43 9.93 84.03 0.83 -11.59 16 6 H 0.07 3.56 7.83 -2.91 -0.02 3.53 16 7 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 8 N -0.97 -57.10 13.06 21.65 0.28 -56.81 16 9 Si 0.96 45.37 29.55 68.60 2.03 47.40 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 C -0.08 -2.22 1.79 -10.77 -0.02 -2.23 16 14 C -0.12 -3.20 5.22 30.67 0.16 -3.04 16 15 C 0.11 2.12 6.34 86.36 0.55 2.67 16 16 N -0.61 -12.12 2.97 -818.91 -2.43 -14.55 16 17 C 0.52 10.65 7.42 87.66 0.65 11.30 16 18 O -0.57 -14.62 13.38 -3.05 -0.04 -14.66 16 19 C -0.14 -2.15 3.28 29.85 0.10 -2.05 16 20 C -0.11 -1.73 2.01 -10.79 -0.02 -1.75 16 21 H 0.12 1.93 7.96 -2.39 -0.02 1.91 16 22 C -0.15 -2.26 8.69 71.98 0.63 -1.64 16 23 C 0.46 7.59 2.69 71.98 0.19 7.78 16 24 F -0.18 -3.12 16.37 44.97 0.74 -2.38 16 25 F -0.19 -3.36 16.80 44.97 0.76 -2.60 16 26 F -0.19 -3.52 16.71 44.97 0.75 -2.77 16 27 C 0.11 2.29 6.43 86.36 0.56 2.84 16 28 C -0.12 -2.59 5.04 30.67 0.15 -2.44 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.89 6.40 -2.39 -0.02 1.88 16 31 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.37 18.77 7.58 -92.70 -0.70 18.06 16 33 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 2.14 7.41 -2.39 -0.02 2.12 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 1.57 5.93 -2.39 -0.01 1.55 16 39 H 0.12 1.60 7.21 -2.39 -0.02 1.58 16 40 H 0.13 1.44 7.74 -2.39 -0.02 1.43 16 41 H 0.07 0.93 7.80 -2.39 -0.02 0.91 16 42 H 0.08 1.53 5.95 -2.39 -0.01 1.52 16 43 H 0.07 0.98 7.80 -2.39 -0.02 0.96 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.09 1.84 7.01 -2.39 -0.02 1.83 16 46 H 0.09 1.78 6.36 -2.39 -0.02 1.77 16 47 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -63.80 376.90 5.95 -57.84 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.28 Total: 26.21 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 5.01 Total: -1.93 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -3.57 Total: -107.11 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.04 Total: -14.66 kcal Atomic # 9 Polarization: -10.00 SS G_CDS: 2.24 Total: -7.76 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -63.80 5.95 -57.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753278490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.797 kcal (2) G-P(sol) polarization free energy of solvation -63.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds