Wall clock time and date at job start Sat Apr 11 2020 04:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47781 * 2 1 4 4 C 1.52998 * 109.46843 * 239.99313 * 2 1 3 5 5 C 1.52998 * 109.46751 * 64.96339 * 4 2 1 6 6 F 1.39901 * 109.47594 * 53.73187 * 5 4 2 7 7 F 1.39907 * 109.47068 * 173.73589 * 5 4 2 8 8 F 1.39901 * 109.47019 * 293.72869 * 5 4 2 9 9 C 1.50700 * 109.46983 * 119.99863 * 2 1 3 10 10 O 1.21283 * 120.00121 * 119.99203 * 9 2 1 11 11 N 1.34778 * 120.00312 * 300.00039 * 9 2 1 12 12 C 1.46497 * 120.00109 * 180.02562 * 11 9 2 13 13 C 1.53009 * 109.46939 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.46963 * 180.02562 * 13 12 11 15 15 C 1.53050 * 109.45948 * 295.02335 * 14 13 12 16 16 C 1.53193 * 109.31134 * 178.60349 * 15 14 13 17 17 N 1.46924 * 108.76732 * 54.65582 * 16 15 14 18 18 C 1.36935 * 120.62978 * 126.40246 * 17 16 15 19 19 H 1.08007 * 119.99866 * 323.47592 * 18 17 16 20 20 C 1.38807 * 120.00275 * 143.47656 * 18 17 16 21 21 N 1.31619 * 119.99738 * 359.74137 * 20 18 17 22 22 Si 1.86804 * 120.00405 * 179.74036 * 20 18 17 23 23 H 1.48498 * 109.46996 * 89.99885 * 22 20 18 24 24 H 1.48497 * 109.47022 * 210.00307 * 22 20 18 25 25 H 1.48503 * 109.46776 * 330.00055 * 22 20 18 26 26 C 1.46926 * 118.74030 * 306.38683 * 17 16 15 27 27 C 1.53043 * 109.45929 * 174.97468 * 14 13 12 28 28 H 1.08997 * 109.47175 * 48.66163 * 1 2 3 29 29 H 1.08994 * 109.47794 * 168.67217 * 1 2 3 30 30 H 1.09009 * 109.47041 * 288.67126 * 1 2 3 31 31 H 1.09000 * 109.47005 * 184.96101 * 4 2 1 32 32 H 1.08995 * 109.47426 * 304.96346 * 4 2 1 33 33 H 0.97003 * 119.99729 * 359.97438 * 11 9 2 34 34 H 1.08994 * 109.47285 * 299.99358 * 12 11 9 35 35 H 1.08997 * 109.47381 * 59.99839 * 12 11 9 36 36 H 1.08994 * 109.46948 * 299.99981 * 13 12 11 37 37 H 1.08997 * 109.46875 * 59.99946 * 13 12 11 38 38 H 1.09002 * 109.46553 * 54.99840 * 14 13 12 39 39 H 1.08997 * 109.49967 * 298.57290 * 15 14 13 40 40 H 1.09000 * 109.49511 * 58.66594 * 15 14 13 41 41 H 1.08999 * 109.59740 * 294.86792 * 16 15 14 42 42 H 1.09000 * 109.69930 * 174.50934 * 16 15 14 43 43 H 0.97004 * 120.00025 * 180.02562 * 21 20 18 44 44 H 1.09005 * 109.58367 * 293.81681 * 26 17 16 45 45 H 1.08998 * 109.70246 * 173.46397 * 26 17 16 46 46 H 1.08997 * 109.49788 * 301.33364 * 27 14 13 47 47 H 1.09004 * 109.49806 * 61.40207 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6343 0.0682 -2.4953 6 9 2.0701 1.3918 -2.3711 7 9 2.2200 -0.5115 -3.6259 8 9 0.2418 0.0463 -2.6285 9 6 2.0323 -0.7104 1.2305 10 8 2.7294 -1.6966 1.1193 11 7 1.7067 -0.2499 2.4546 12 6 2.1955 -0.9402 3.6508 13 6 1.6858 -0.2186 4.9001 14 6 2.1968 -0.9391 6.1492 15 6 1.5875 -2.3416 6.2140 16 6 2.1282 -3.0724 7.4470 17 7 1.8717 -2.2478 8.6356 18 6 1.2130 -2.7688 9.7172 19 1 0.4058 -3.4713 9.5710 20 6 1.5827 -2.3940 11.0016 21 7 2.5697 -1.5418 11.1800 22 14 0.6794 -3.0991 12.4769 23 1 1.3494 -4.3494 12.9163 24 1 0.6968 -2.1119 13.5861 25 1 -0.7261 -3.3965 12.1009 26 6 2.3356 -0.8537 8.6419 27 6 1.7927 -0.1478 7.3953 28 1 -0.3633 0.6788 -0.7716 29 1 -0.3634 -1.0075 -0.2018 30 1 -0.3634 0.3290 0.9737 31 1 3.1263 -0.7990 -1.2059 32 1 1.6058 -1.7201 -1.2946 33 1 1.1493 0.5390 2.5436 34 1 1.8325 -1.9679 3.6510 35 1 3.2855 -0.9398 3.6506 36 1 2.0491 0.8090 4.8996 37 1 0.5959 -0.2187 4.9004 38 1 3.2832 -1.0169 6.1049 39 1 0.5025 -2.2640 6.2836 40 1 1.8561 -2.8968 5.3153 41 1 3.2010 -3.2308 7.3368 42 1 1.6260 -4.0339 7.5539 43 1 2.8284 -1.2802 12.0776 44 1 3.4253 -0.8312 8.6292 45 1 1.9701 -0.3488 9.5361 46 1 2.2074 0.8585 7.3376 47 1 0.7058 -0.0907 7.4534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753597129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:32 Heat of formation + Delta-G solvation = -200.470667 kcal Electronic energy + Delta-G solvation = -29219.102825 eV Core-core repulsion = 24600.213722 eV Total energy + Delta-G solvation = -4618.889102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.54919 -48.03205 -48.00659 -40.26925 -38.04531 -35.69481 -35.26953 -33.58407 -31.32820 -30.06188 -29.58391 -28.39310 -25.68382 -24.85087 -23.39255 -22.61649 -21.85008 -20.90840 -20.17623 -19.10819 -18.99016 -18.93123 -17.97749 -16.82735 -16.71721 -16.13905 -15.96216 -15.21449 -14.91338 -14.84973 -14.79382 -14.48085 -14.31443 -14.16522 -14.08150 -13.94304 -13.78122 -13.46560 -13.36975 -13.27009 -12.83499 -12.65448 -12.56124 -12.21094 -12.09244 -11.92891 -11.78207 -11.56901 -11.36207 -11.15838 -10.85223 -10.74374 -10.50095 -10.21302 -10.11992 -10.09316 -9.87008 -9.46123 -9.39773 -9.20239 -8.45482 -6.49900 -5.77871 -3.31041 2.26143 2.32031 2.85776 3.36782 3.42174 3.43201 3.44323 3.54257 3.63430 4.14313 4.31764 4.41968 4.48630 4.68437 4.89969 4.99066 5.02651 5.10547 5.20636 5.28157 5.36401 5.42256 5.44155 5.60539 5.64527 5.74836 5.78094 6.00251 6.02434 6.10619 6.22295 6.29267 6.40359 6.58001 6.66795 6.74372 6.86071 6.90120 7.05234 7.20662 7.44753 7.76760 7.80438 7.90843 8.54260 9.26653 9.85788 10.47185 11.29482 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.039362 B = 0.001695 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.174165 B =16515.423670 C =16578.314245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.116 4.116 3 H 0.111 0.889 4 C -0.149 4.149 5 C 0.453 3.547 6 F -0.184 7.184 7 F -0.183 7.183 8 F -0.181 7.181 9 C 0.520 3.480 10 O -0.538 6.538 11 N -0.724 5.724 12 C 0.116 3.884 13 C -0.125 4.125 14 C -0.075 4.075 15 C -0.130 4.130 16 C 0.144 3.856 17 N -0.593 5.593 18 C -0.253 4.253 19 H 0.061 0.939 20 C 0.008 3.992 21 N -0.905 5.905 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.171 3.829 27 C -0.135 4.135 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.401 0.599 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.016 0.984 42 H 0.051 0.949 43 H 0.254 0.746 44 H 0.015 0.985 45 H 0.089 0.911 46 H 0.046 0.954 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 7.077 -26.166 27.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.137 4.137 3 H 0.129 0.871 4 C -0.187 4.187 5 C 0.399 3.601 6 F -0.165 7.165 7 F -0.164 7.164 8 F -0.162 7.162 9 C 0.305 3.695 10 O -0.415 6.415 11 N -0.375 5.375 12 C -0.007 4.007 13 C -0.163 4.163 14 C -0.094 4.094 15 C -0.169 4.169 16 C 0.018 3.982 17 N -0.317 5.317 18 C -0.383 4.383 19 H 0.079 0.921 20 C -0.191 4.191 21 N -0.549 5.549 22 Si 0.733 3.267 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.045 3.955 27 C -0.175 4.175 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.235 0.765 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.107 0.893 46 H 0.064 0.936 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.614 6.430 -26.076 26.984 hybrid contribution -0.691 0.228 0.648 0.974 sum -3.305 6.658 -25.427 26.492 Atomic orbital electron populations 1.22093 0.91624 1.04048 1.03788 1.21282 0.98734 1.01432 0.92260 0.87059 1.22717 1.06295 1.00569 0.89138 1.20571 0.74826 0.78517 0.86146 1.93183 1.89460 1.37863 1.96023 1.93204 1.84108 1.84187 1.54935 1.93171 1.30328 1.96381 1.96359 1.20187 0.80266 0.84558 0.84474 1.90743 1.37850 1.26140 1.86788 1.46061 1.53529 1.32118 1.05836 1.21593 0.99468 0.96885 0.82750 1.21915 1.01198 0.99428 0.93779 1.20972 0.99787 0.95512 0.93100 1.22122 1.00344 0.95609 0.98802 1.20918 0.96621 0.93724 0.86930 1.43963 1.66782 1.07006 1.13908 1.19133 1.10625 1.24237 0.84353 0.92115 1.25348 0.96624 0.99101 0.98040 1.69927 1.29344 1.34750 1.20845 0.86287 0.79273 0.78601 0.82561 1.21291 1.21651 1.20447 1.20811 0.95418 0.84651 0.94588 1.22255 1.00725 0.97592 0.96886 0.90339 0.91217 0.91266 0.86267 0.86381 0.76497 0.90825 0.91393 0.91755 0.91562 0.91721 0.92520 0.93190 0.96626 0.93008 0.93583 0.96688 0.89272 0.93568 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 8.22 37.16 0.31 -0.54 16 2 C -0.12 -0.74 2.62 -91.77 -0.24 -0.98 16 3 H 0.11 0.56 7.50 -51.93 -0.39 0.17 16 4 C -0.15 -0.97 4.17 -26.73 -0.11 -1.08 16 5 C 0.45 3.15 3.11 37.16 0.12 3.27 16 6 F -0.18 -1.38 16.46 2.25 0.04 -1.34 16 7 F -0.18 -1.48 17.32 2.25 0.04 -1.45 16 8 F -0.18 -1.30 14.46 2.25 0.03 -1.27 16 9 C 0.52 5.07 7.15 -10.98 -0.08 4.99 16 10 O -0.54 -7.39 15.92 5.56 0.09 -7.30 16 11 N -0.72 -6.37 5.36 -60.29 -0.32 -6.69 16 12 C 0.12 1.29 5.43 -4.04 -0.02 1.27 16 13 C -0.13 -1.43 4.80 -26.73 -0.13 -1.56 16 14 C -0.07 -1.15 2.15 -90.58 -0.19 -1.35 16 15 C -0.13 -2.17 5.15 -26.61 -0.14 -2.31 16 16 C 0.14 3.03 6.52 -3.71 -0.02 3.01 16 17 N -0.59 -14.85 2.98 -172.32 -0.51 -15.36 16 18 C -0.25 -6.96 9.54 -15.06 -0.14 -7.10 16 19 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 20 C 0.01 0.21 5.24 -17.43 -0.09 0.12 16 21 N -0.90 -26.11 10.89 55.49 0.60 -25.51 16 22 Si 0.90 21.59 29.55 -169.99 -5.02 16.57 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.17 4.03 5.22 -3.71 -0.02 4.01 16 27 C -0.14 -2.45 5.36 -26.61 -0.14 -2.60 16 28 H 0.08 0.39 6.31 -51.93 -0.33 0.07 16 29 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 30 H 0.07 0.31 7.28 -51.92 -0.38 -0.06 16 31 H 0.12 0.80 7.96 -51.93 -0.41 0.38 16 32 H 0.12 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.40 2.45 7.81 -40.82 -0.32 2.13 16 34 H 0.07 0.92 6.54 -51.93 -0.34 0.58 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.74 6.50 -51.93 -0.34 0.40 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 1.08 7.93 -51.93 -0.41 0.66 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 2.37 6.17 -51.93 -0.32 2.05 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 378.53 15.07 5.70 5.70 Total: -1.00 -31.37 378.53 -7.69 -39.07 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.43 Total: -1.57 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -0.91 Total: -0.86 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.23 Total: -47.56 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: 0.09 Total: -7.30 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.11 Total: -4.06 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.37 -7.69 -39.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753597129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.404 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds