Wall clock time and date at job start Sat Apr 11 2020 04:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47781 * 2 1 4 4 C 1.52998 * 109.46843 * 239.99313 * 2 1 3 5 5 C 1.52998 * 109.46751 * 64.96339 * 4 2 1 6 6 F 1.39901 * 109.47594 * 53.73187 * 5 4 2 7 7 F 1.39907 * 109.47068 * 173.73589 * 5 4 2 8 8 F 1.39901 * 109.47019 * 293.72869 * 5 4 2 9 9 C 1.50700 * 109.46983 * 119.99863 * 2 1 3 10 10 O 1.21283 * 120.00121 * 119.99203 * 9 2 1 11 11 N 1.34778 * 120.00312 * 300.00039 * 9 2 1 12 12 C 1.46497 * 120.00109 * 180.02562 * 11 9 2 13 13 C 1.53009 * 109.46939 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.46963 * 180.02562 * 13 12 11 15 15 C 1.53050 * 109.45948 * 295.02335 * 14 13 12 16 16 C 1.53193 * 109.31134 * 178.60349 * 15 14 13 17 17 N 1.46924 * 108.76732 * 54.65582 * 16 15 14 18 18 C 1.36935 * 120.62978 * 126.40246 * 17 16 15 19 19 H 1.08007 * 119.99866 * 323.47592 * 18 17 16 20 20 C 1.38807 * 120.00275 * 143.47656 * 18 17 16 21 21 N 1.31619 * 119.99738 * 359.74137 * 20 18 17 22 22 Si 1.86804 * 120.00405 * 179.74036 * 20 18 17 23 23 H 1.48498 * 109.46996 * 89.99885 * 22 20 18 24 24 H 1.48497 * 109.47022 * 210.00307 * 22 20 18 25 25 H 1.48503 * 109.46776 * 330.00055 * 22 20 18 26 26 C 1.46926 * 118.74030 * 306.38683 * 17 16 15 27 27 C 1.53043 * 109.45929 * 174.97468 * 14 13 12 28 28 H 1.08997 * 109.47175 * 48.66163 * 1 2 3 29 29 H 1.08994 * 109.47794 * 168.67217 * 1 2 3 30 30 H 1.09009 * 109.47041 * 288.67126 * 1 2 3 31 31 H 1.09000 * 109.47005 * 184.96101 * 4 2 1 32 32 H 1.08995 * 109.47426 * 304.96346 * 4 2 1 33 33 H 0.97003 * 119.99729 * 359.97438 * 11 9 2 34 34 H 1.08994 * 109.47285 * 299.99358 * 12 11 9 35 35 H 1.08997 * 109.47381 * 59.99839 * 12 11 9 36 36 H 1.08994 * 109.46948 * 299.99981 * 13 12 11 37 37 H 1.08997 * 109.46875 * 59.99946 * 13 12 11 38 38 H 1.09002 * 109.46553 * 54.99840 * 14 13 12 39 39 H 1.08997 * 109.49967 * 298.57290 * 15 14 13 40 40 H 1.09000 * 109.49511 * 58.66594 * 15 14 13 41 41 H 1.08999 * 109.59740 * 294.86792 * 16 15 14 42 42 H 1.09000 * 109.69930 * 174.50934 * 16 15 14 43 43 H 0.97004 * 120.00025 * 180.02562 * 21 20 18 44 44 H 1.09005 * 109.58367 * 293.81681 * 26 17 16 45 45 H 1.08998 * 109.70246 * 173.46397 * 26 17 16 46 46 H 1.08997 * 109.49788 * 301.33364 * 27 14 13 47 47 H 1.09004 * 109.49806 * 61.40207 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6343 0.0682 -2.4953 6 9 2.0701 1.3918 -2.3711 7 9 2.2200 -0.5115 -3.6259 8 9 0.2418 0.0463 -2.6285 9 6 2.0323 -0.7104 1.2305 10 8 2.7294 -1.6966 1.1193 11 7 1.7067 -0.2499 2.4546 12 6 2.1955 -0.9402 3.6508 13 6 1.6858 -0.2186 4.9001 14 6 2.1968 -0.9391 6.1492 15 6 1.5875 -2.3416 6.2140 16 6 2.1282 -3.0724 7.4470 17 7 1.8717 -2.2478 8.6356 18 6 1.2130 -2.7688 9.7172 19 1 0.4058 -3.4713 9.5710 20 6 1.5827 -2.3940 11.0016 21 7 2.5697 -1.5418 11.1800 22 14 0.6794 -3.0991 12.4769 23 1 1.3494 -4.3494 12.9163 24 1 0.6968 -2.1119 13.5861 25 1 -0.7261 -3.3965 12.1009 26 6 2.3356 -0.8537 8.6419 27 6 1.7927 -0.1478 7.3953 28 1 -0.3633 0.6788 -0.7716 29 1 -0.3634 -1.0075 -0.2018 30 1 -0.3634 0.3290 0.9737 31 1 3.1263 -0.7990 -1.2059 32 1 1.6058 -1.7201 -1.2946 33 1 1.1493 0.5390 2.5436 34 1 1.8325 -1.9679 3.6510 35 1 3.2855 -0.9398 3.6506 36 1 2.0491 0.8090 4.8996 37 1 0.5959 -0.2187 4.9004 38 1 3.2832 -1.0169 6.1049 39 1 0.5025 -2.2640 6.2836 40 1 1.8561 -2.8968 5.3153 41 1 3.2010 -3.2308 7.3368 42 1 1.6260 -4.0339 7.5539 43 1 2.8284 -1.2802 12.0776 44 1 3.4253 -0.8312 8.6292 45 1 1.9701 -0.3488 9.5361 46 1 2.2074 0.8585 7.3376 47 1 0.7058 -0.0907 7.4534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753597129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:31 Heat of formation + Delta-G solvation = -218.858918 kcal Electronic energy + Delta-G solvation = -29219.900199 eV Core-core repulsion = 24600.213722 eV Total energy + Delta-G solvation = -4619.686477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.11638 -48.61268 -48.57001 -41.04474 -39.50425 -36.79238 -35.96260 -35.06833 -33.02943 -31.58330 -30.51402 -29.51837 -27.00055 -25.78958 -24.64271 -23.76173 -23.11306 -22.13479 -21.07847 -20.56085 -19.59090 -19.52105 -18.70111 -18.53233 -17.43542 -17.02557 -16.83920 -16.69137 -15.90861 -15.67368 -15.52202 -15.47286 -15.24405 -15.07555 -14.98412 -14.87010 -14.75784 -14.72286 -14.62385 -14.29286 -14.00245 -13.84598 -13.71947 -13.13135 -13.03809 -12.90193 -12.76332 -12.67451 -12.58252 -12.38197 -12.27242 -12.21999 -12.15573 -11.89402 -11.81599 -11.49195 -11.11726 -10.95428 -10.78965 -10.53005 -10.06741 -8.51570 -7.86225 -5.43346 1.45797 1.46910 1.55963 1.57272 1.69576 2.18234 2.49661 2.87322 2.98877 3.09725 3.29064 3.57580 3.76136 3.82952 3.85583 3.90179 3.96364 4.14841 4.22110 4.33503 4.46664 4.50922 4.61905 4.65406 4.68915 4.78402 4.80693 4.81624 4.92779 4.93133 5.06465 5.07865 5.14646 5.26286 5.29868 5.38770 5.43822 5.45642 5.50804 5.60712 5.69448 5.86681 6.46344 6.52705 7.19485 7.21075 7.88008 8.42728 9.18153 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.039362 B = 0.001695 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.174165 B =16515.423670 C =16578.314245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.107 4.107 3 H 0.131 0.869 4 C -0.147 4.147 5 C 0.459 3.541 6 F -0.185 7.185 7 F -0.191 7.191 8 F -0.181 7.181 9 C 0.519 3.481 10 O -0.582 6.582 11 N -0.713 5.713 12 C 0.122 3.878 13 C -0.108 4.108 14 C -0.070 4.070 15 C -0.117 4.117 16 C 0.138 3.862 17 N -0.613 5.613 18 C -0.266 4.266 19 H 0.061 0.939 20 C -0.047 4.047 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.268 1.268 26 C 0.174 3.826 27 C -0.122 4.122 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.417 0.583 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.007 0.993 42 H 0.048 0.952 43 H 0.250 0.750 44 H -0.011 1.011 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 7.999 -27.761 29.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.128 4.128 3 H 0.149 0.851 4 C -0.185 4.185 5 C 0.405 3.595 6 F -0.167 7.167 7 F -0.172 7.172 8 F -0.163 7.163 9 C 0.306 3.694 10 O -0.462 6.462 11 N -0.365 5.365 12 C -0.001 4.001 13 C -0.146 4.146 14 C -0.090 4.090 15 C -0.156 4.156 16 C 0.012 3.988 17 N -0.337 5.337 18 C -0.396 4.396 19 H 0.079 0.921 20 C -0.243 4.243 21 N -0.580 5.580 22 Si 0.797 3.203 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.193 1.193 26 C 0.049 3.951 27 C -0.161 4.161 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.025 0.975 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.008 0.992 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.022 7.375 -27.699 28.945 hybrid contribution -0.226 -0.088 1.130 1.156 sum -4.248 7.287 -26.569 27.876 Atomic orbital electron populations 1.22111 0.90517 1.03994 1.04785 1.21267 0.99455 1.01768 0.90305 0.85144 1.22693 1.06179 1.00588 0.89068 1.20545 0.74684 0.78342 0.85930 1.93180 1.89488 1.38012 1.96005 1.93189 1.84269 1.84335 1.55422 1.93172 1.30349 1.96375 1.96359 1.20707 0.79376 0.83971 0.85367 1.90730 1.39876 1.28189 1.87410 1.45904 1.53295 1.32354 1.04959 1.21351 0.98801 0.96460 0.83536 1.21700 1.01792 0.99718 0.91407 1.20882 0.99445 0.94748 0.93881 1.21971 1.00022 0.96256 0.97311 1.21087 0.96344 0.93876 0.87457 1.44243 1.66809 1.08084 1.14593 1.19449 1.10786 1.23927 0.85470 0.92136 1.26108 0.97772 0.99683 1.00723 1.70114 1.30963 1.35975 1.20962 0.85250 0.78533 0.77527 0.78999 1.21219 1.21773 1.19292 1.20635 0.93879 0.84602 0.95979 1.22041 1.00315 0.98403 0.95313 0.89688 0.91770 0.90008 0.86550 0.86398 0.74575 0.92093 0.92525 0.89777 0.90302 0.92396 0.92575 0.90745 0.97457 0.93384 0.94059 0.99246 0.92865 0.91313 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 8.22 71.98 0.59 -0.65 16 2 C -0.11 -1.11 2.62 -11.54 -0.03 -1.14 16 3 H 0.13 0.90 7.50 -2.39 -0.02 0.88 16 4 C -0.15 -1.70 4.17 30.59 0.13 -1.57 16 5 C 0.46 5.64 3.11 71.98 0.22 5.87 16 6 F -0.19 -2.41 16.46 44.97 0.74 -1.67 16 7 F -0.19 -2.89 17.32 44.97 0.78 -2.11 16 8 F -0.18 -2.28 14.46 44.97 0.65 -1.63 16 9 C 0.52 9.03 7.15 87.66 0.63 9.65 16 10 O -0.58 -15.37 15.92 -3.04 -0.05 -15.42 16 11 N -0.71 -10.42 5.36 -463.06 -2.48 -12.90 16 12 C 0.12 2.40 5.43 86.38 0.47 2.87 16 13 C -0.11 -2.10 4.80 30.59 0.15 -1.96 16 14 C -0.07 -2.04 2.15 -10.77 -0.02 -2.06 16 15 C -0.12 -3.73 5.15 30.68 0.16 -3.57 16 16 C 0.14 5.81 6.52 86.36 0.56 6.37 16 17 N -0.61 -31.24 2.98 -699.09 -2.08 -33.32 16 18 C -0.27 -14.83 9.54 84.03 0.80 -14.03 16 19 H 0.06 3.30 7.83 -2.91 -0.02 3.28 16 20 C -0.05 -2.67 5.24 84.86 0.44 -2.22 16 21 N -0.93 -55.60 10.89 21.65 0.24 -55.36 16 22 Si 0.97 45.00 29.55 68.60 2.03 47.03 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 C 0.17 8.43 5.22 86.36 0.45 8.88 16 27 C -0.12 -4.26 5.36 30.67 0.16 -4.10 16 28 H 0.08 0.60 6.31 -2.39 -0.02 0.59 16 29 H 0.06 0.60 8.07 -2.39 -0.02 0.58 16 30 H 0.08 0.45 7.28 -2.38 -0.02 0.43 16 31 H 0.12 1.44 7.96 -2.39 -0.02 1.42 16 32 H 0.12 1.38 8.10 -2.39 -0.02 1.36 16 33 H 0.42 3.43 7.81 -92.71 -0.72 2.71 16 34 H 0.06 1.38 6.54 -2.39 -0.02 1.36 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.07 2.04 6.50 -2.39 -0.02 2.02 16 41 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 43 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 44 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 45 H 0.05 2.93 6.17 -2.39 -0.01 2.92 16 46 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -69.83 378.53 4.79 -65.04 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.26 Total: 8.01 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 4.71 Total: 2.34 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -4.33 Total: -101.59 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.05 Total: -15.42 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 2.17 Total: -5.41 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -69.83 4.79 -65.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753597129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.820 kcal (2) G-P(sol) polarization free energy of solvation -69.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds