Wall clock time and date at job start Sat Apr 11 2020 04:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35982 * 116.99972 * 2 1 4 4 C 1.38719 * 120.00024 * 0.02562 * 3 2 1 5 5 C 1.38104 * 120.00024 * 179.97438 * 4 3 2 6 6 C 1.38723 * 120.00206 * 0.02562 * 5 4 3 7 7 O 1.35976 * 120.00100 * 180.02562 * 6 5 4 8 8 C 1.42899 * 117.00284 * 359.97438 * 7 6 5 9 9 C 1.38675 * 119.99815 * 0.27331 * 6 5 4 10 10 C 1.50699 * 120.00349 * 179.73150 * 9 6 5 11 11 C 1.50700 * 109.47251 * 84.99728 * 10 9 6 12 12 O 1.21273 * 120.00219 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99750 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99666 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46870 * 34.99878 * 14 13 11 16 16 C 1.52997 * 109.47012 * 274.99665 * 14 13 11 17 17 C 1.52997 * 109.46842 * 154.99836 * 14 13 11 18 18 N 1.46502 * 109.47156 * 305.00209 * 17 14 13 19 19 C 1.46499 * 119.99988 * 269.99745 * 18 17 14 20 20 C 1.36937 * 120.00084 * 90.00216 * 18 17 14 21 21 H 1.07996 * 120.00075 * 22.02412 * 20 18 17 22 22 C 1.38816 * 119.99827 * 202.02719 * 20 18 17 23 23 N 1.31622 * 120.00041 * 11.42935 * 22 20 18 24 24 Si 1.86793 * 119.99884 * 191.43195 * 22 20 18 25 25 H 1.48497 * 109.47069 * 89.99874 * 24 22 20 26 26 H 1.48503 * 109.47230 * 209.99855 * 24 22 20 27 27 H 1.48502 * 109.47262 * 330.00050 * 24 22 20 28 28 C 1.38157 * 119.99805 * 359.47001 * 9 6 5 29 29 H 1.08997 * 109.47703 * 60.00044 * 1 2 3 30 30 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47003 * 300.00033 * 1 2 3 32 32 H 1.08004 * 120.00039 * 359.97438 * 4 3 2 33 33 H 1.08005 * 120.00322 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46920 * 60.00687 * 8 7 6 35 35 H 1.09002 * 109.47511 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.47259 * 300.00351 * 8 7 6 37 37 H 1.08995 * 109.47082 * 205.00359 * 10 9 6 38 38 H 1.09007 * 109.46713 * 324.99711 * 10 9 6 39 39 H 0.96991 * 119.99716 * 0.02562 * 13 11 10 40 40 H 1.09003 * 109.46708 * 60.00556 * 16 14 13 41 41 H 1.08999 * 109.46867 * 179.97438 * 16 14 13 42 42 H 1.08999 * 109.47629 * 300.00605 * 16 14 13 43 43 H 1.09006 * 109.47032 * 64.99671 * 17 14 13 44 44 H 1.08995 * 109.47129 * 184.99818 * 17 14 13 45 45 H 1.09003 * 109.47058 * 94.03894 * 19 18 17 46 46 H 1.08997 * 109.47638 * 214.04679 * 19 18 17 47 47 H 1.09004 * 109.47421 * 334.04701 * 19 18 17 48 48 H 0.96991 * 120.00211 * 180.02562 * 23 22 20 49 49 H 1.08002 * 120.00040 * 180.22838 * 28 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9178 3.6055 0.0011 6 6 3.3031 3.6782 0.0005 7 8 3.9204 4.8898 0.0016 8 6 3.0805 6.0459 0.0027 9 6 4.0584 2.5152 -0.0063 10 6 5.5633 2.5940 -0.0130 11 6 6.0650 2.7399 1.4005 12 8 5.2781 2.7759 2.3226 13 7 7.3883 2.8305 1.6399 14 6 7.8760 2.9730 3.0141 15 1 7.2355 2.4037 3.6877 16 6 7.8515 4.4497 3.4133 17 6 9.3088 2.4440 3.1040 18 7 9.3526 1.0660 2.6085 19 6 9.1427 -0.0516 3.5321 20 6 9.5899 0.8227 1.2819 21 1 10.0848 1.5674 0.6764 22 6 9.1940 -0.3813 0.7155 23 7 8.3988 -1.1918 1.3811 24 14 9.7902 -0.8511 -0.9912 25 1 11.0634 -1.6073 -0.8801 26 1 8.7680 -1.6980 -1.6569 27 1 10.0131 0.3784 -1.7936 28 6 3.4312 1.2842 -0.0014 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2122 2.3185 0.0005 33 1 1.3296 4.5114 0.0011 34 1 2.4514 6.0370 0.8927 35 1 3.6983 6.9439 0.0030 36 1 2.4511 6.0386 -0.8873 37 1 5.9728 1.6842 -0.4518 38 1 5.8794 3.4554 -0.6015 39 1 8.0176 2.8021 0.9024 40 1 6.8307 4.8265 3.3492 41 1 8.2140 4.5556 4.4358 42 1 8.4919 5.0190 2.7396 43 1 9.9655 3.0688 2.4987 44 1 9.6402 2.4675 4.1421 45 1 8.0918 -0.3405 3.5200 46 1 9.7559 -0.8982 3.2234 47 1 9.4243 0.2524 4.5403 48 1 8.1225 -2.0332 0.9856 49 1 4.0194 0.3784 -0.0030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754313267.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:35 Heat of formation + Delta-G solvation = -60.939160 kcal Electronic energy + Delta-G solvation = -30375.066772 eV Core-core repulsion = 26304.084950 eV Total energy + Delta-G solvation = -4070.981822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.48379 -39.02787 -38.69370 -36.51265 -35.98530 -33.84812 -32.54096 -31.23328 -30.13042 -29.75048 -27.82938 -26.88522 -26.68909 -26.09559 -25.54751 -22.34155 -21.95950 -21.33443 -20.11856 -19.46637 -17.94119 -17.43966 -16.83751 -16.76271 -16.25440 -15.68638 -15.45673 -15.39867 -14.82775 -14.72403 -14.43214 -14.35220 -13.73591 -13.44535 -13.30240 -13.01188 -12.97113 -12.77260 -12.70487 -12.43133 -12.12541 -12.01446 -11.86425 -11.57683 -11.51881 -11.37892 -11.27567 -11.12048 -10.83223 -10.67248 -10.59532 -10.36398 -10.32605 -10.17040 -10.00472 -9.78521 -9.14646 -8.65346 -8.53485 -8.09050 -7.57374 -6.73920 -5.69924 -3.16056 1.36223 1.62196 3.30261 3.36313 3.43096 3.44256 3.45654 3.53072 3.76810 4.23382 4.49233 4.73096 4.79760 5.00144 5.05519 5.08607 5.12437 5.21016 5.33501 5.38575 5.39831 5.44008 5.54266 5.57309 5.62295 5.72618 5.78892 5.94290 6.01167 6.06552 6.08205 6.24474 6.29654 6.34045 6.38365 6.43281 6.52947 6.63048 6.78006 6.80948 6.98487 7.36283 7.42859 7.46937 7.59117 7.74386 7.84319 8.40031 8.48747 9.15335 9.24440 9.88427 10.38750 11.34182 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010108 B = 0.004030 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.344372 B = 6947.049250 C = 8351.146487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.091 3.909 4 C -0.175 4.175 5 C -0.173 4.173 6 C 0.107 3.893 7 O -0.311 6.311 8 C 0.030 3.970 9 C -0.043 4.043 10 C -0.098 4.098 11 C 0.526 3.474 12 O -0.556 6.556 13 N -0.690 5.690 14 C 0.120 3.880 15 H 0.074 0.926 16 C -0.158 4.158 17 C 0.142 3.858 18 N -0.598 5.598 19 C 0.165 3.835 20 C -0.256 4.256 21 H 0.067 0.933 22 C 0.007 3.993 23 N -0.899 5.899 24 Si 0.896 3.104 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.279 1.279 28 C -0.096 4.096 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.403 0.597 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.047 0.953 44 H 0.050 0.950 45 H 0.027 0.973 46 H 0.045 0.955 47 H -0.006 1.006 48 H 0.252 0.748 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.665 11.055 -3.648 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.047 3.953 4 C -0.194 4.194 5 C -0.192 4.192 6 C 0.062 3.938 7 O -0.224 6.224 8 C -0.065 4.065 9 C -0.044 4.044 10 C -0.138 4.138 11 C 0.312 3.688 12 O -0.435 6.435 13 N -0.339 5.339 14 C 0.012 3.988 15 H 0.092 0.908 16 C -0.217 4.217 17 C 0.014 3.986 18 N -0.320 5.320 19 C 0.020 3.980 20 C -0.385 4.385 21 H 0.084 0.916 22 C -0.192 4.192 23 N -0.544 5.544 24 Si 0.726 3.274 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.205 1.205 28 C -0.115 4.115 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.238 0.762 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.046 0.954 46 H 0.063 0.937 47 H 0.013 0.987 48 H 0.062 0.938 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.966 10.738 -3.023 17.104 hybrid contribution -0.124 -0.205 -1.265 1.287 sum -13.089 10.533 -4.288 17.340 Atomic orbital electron populations 1.22983 0.79048 1.03611 1.00921 1.86106 1.20773 1.26795 1.89384 1.18783 0.92078 0.84064 1.00380 1.20892 0.99537 0.91725 1.07202 1.20860 0.93034 0.98135 1.07161 1.18603 0.90592 0.85099 0.99465 1.86092 1.35208 1.12075 1.89063 1.22979 0.95850 0.86857 1.00848 1.18463 0.94472 0.89771 1.01699 1.20509 0.91390 1.05220 0.96633 1.20073 0.82717 0.75837 0.90175 1.90620 1.55670 1.51315 1.45911 1.45658 1.06316 1.72540 1.09409 1.21746 0.99117 0.94193 0.83706 0.90765 1.22148 1.01430 0.97576 1.00590 1.21181 0.92385 0.87381 0.97671 1.43884 1.83208 0.99136 1.05819 1.20788 0.99821 0.89791 0.87598 1.19093 1.31609 1.01969 0.85865 0.91554 1.24987 0.97933 0.98739 0.97563 1.70077 1.35247 1.11685 1.37346 0.86398 0.78073 0.78396 0.84513 1.21622 1.21748 1.20453 1.20203 0.91382 0.97718 1.02155 0.93038 0.88500 0.92944 0.85601 0.85514 0.92951 0.88543 0.93104 0.87570 0.88127 0.76199 0.93010 0.92538 0.93118 0.93421 0.93166 0.95445 0.93674 0.98699 0.93755 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.69 10.50 -19.68 -0.21 -4.89 16 3 C 0.09 1.44 6.69 -39.24 -0.26 1.18 16 4 C -0.17 -2.35 9.03 -39.45 -0.36 -2.71 16 5 C -0.17 -2.34 9.03 -39.45 -0.36 -2.70 16 6 C 0.11 1.70 6.66 -39.24 -0.26 1.44 16 7 O -0.31 -4.59 9.63 -19.67 -0.19 -4.78 16 8 C 0.03 0.30 9.81 101.05 0.99 1.29 16 9 C -0.04 -0.75 4.38 -104.49 -0.46 -1.20 16 10 C -0.10 -1.71 5.55 -29.04 -0.16 -1.87 16 11 C 0.53 10.86 7.79 -10.98 -0.09 10.78 16 12 O -0.56 -13.22 15.70 5.56 0.09 -13.13 16 13 N -0.69 -13.67 4.49 -53.81 -0.24 -13.91 16 14 C 0.12 2.33 2.88 -67.93 -0.20 2.14 16 15 H 0.07 1.68 7.58 -51.93 -0.39 1.28 16 16 C -0.16 -2.53 9.48 37.16 0.35 -2.18 16 17 C 0.14 2.79 5.36 -4.04 -0.02 2.77 16 18 N -0.60 -14.37 2.82 -181.12 -0.51 -14.88 16 19 C 0.16 4.08 9.01 59.85 0.54 4.62 16 20 C -0.26 -6.49 8.02 -15.06 -0.12 -6.61 16 21 H 0.07 1.62 7.84 -52.49 -0.41 1.21 16 22 C 0.01 0.18 5.13 -17.43 -0.09 0.09 16 23 N -0.90 -25.47 10.57 55.49 0.59 -24.89 16 24 Si 0.90 20.91 29.57 -169.99 -5.03 15.88 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 C -0.10 -1.68 9.62 -39.45 -0.38 -2.06 16 29 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 32 H 0.13 1.30 6.29 -52.48 -0.33 0.97 16 33 H 0.13 1.33 6.29 -52.48 -0.33 1.00 16 34 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 37 H 0.11 1.86 8.05 -51.93 -0.42 1.44 16 38 H 0.10 1.53 7.69 -51.93 -0.40 1.14 16 39 H 0.40 7.77 7.40 -40.82 -0.30 7.47 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.88 8.03 -51.93 -0.42 0.47 16 44 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 45 H 0.03 0.75 7.44 -51.93 -0.39 0.37 16 46 H 0.04 1.19 7.16 -51.93 -0.37 0.82 16 47 H -0.01 -0.12 7.85 -51.93 -0.41 -0.53 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.14 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 400.04 15.07 6.03 6.03 Total: -1.00 -33.11 400.04 -7.18 -40.29 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.84 Total: 8.04 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 0.13 Total: 6.26 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.17 Total: -53.68 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.31 Total: -22.81 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.11 -7.18 -40.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313267.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.650 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds