Wall clock time and date at job start Sat Apr 11 2020 04:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35982 * 116.99972 * 2 1 4 4 C 1.38719 * 120.00024 * 0.02562 * 3 2 1 5 5 C 1.38104 * 120.00024 * 179.97438 * 4 3 2 6 6 C 1.38723 * 120.00206 * 0.02562 * 5 4 3 7 7 O 1.35976 * 120.00100 * 180.02562 * 6 5 4 8 8 C 1.42899 * 117.00284 * 359.97438 * 7 6 5 9 9 C 1.38675 * 119.99815 * 0.27331 * 6 5 4 10 10 C 1.50699 * 120.00349 * 179.73150 * 9 6 5 11 11 C 1.50700 * 109.47251 * 84.99728 * 10 9 6 12 12 O 1.21273 * 120.00219 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99750 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99666 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46870 * 34.99878 * 14 13 11 16 16 C 1.52997 * 109.47012 * 274.99665 * 14 13 11 17 17 C 1.52997 * 109.46842 * 154.99836 * 14 13 11 18 18 N 1.46502 * 109.47156 * 305.00209 * 17 14 13 19 19 C 1.46499 * 119.99988 * 269.99745 * 18 17 14 20 20 C 1.36937 * 120.00084 * 90.00216 * 18 17 14 21 21 H 1.07996 * 120.00075 * 22.02412 * 20 18 17 22 22 C 1.38816 * 119.99827 * 202.02719 * 20 18 17 23 23 N 1.31622 * 120.00041 * 11.42935 * 22 20 18 24 24 Si 1.86793 * 119.99884 * 191.43195 * 22 20 18 25 25 H 1.48497 * 109.47069 * 89.99874 * 24 22 20 26 26 H 1.48503 * 109.47230 * 209.99855 * 24 22 20 27 27 H 1.48502 * 109.47262 * 330.00050 * 24 22 20 28 28 C 1.38157 * 119.99805 * 359.47001 * 9 6 5 29 29 H 1.08997 * 109.47703 * 60.00044 * 1 2 3 30 30 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47003 * 300.00033 * 1 2 3 32 32 H 1.08004 * 120.00039 * 359.97438 * 4 3 2 33 33 H 1.08005 * 120.00322 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46920 * 60.00687 * 8 7 6 35 35 H 1.09002 * 109.47511 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.47259 * 300.00351 * 8 7 6 37 37 H 1.08995 * 109.47082 * 205.00359 * 10 9 6 38 38 H 1.09007 * 109.46713 * 324.99711 * 10 9 6 39 39 H 0.96991 * 119.99716 * 0.02562 * 13 11 10 40 40 H 1.09003 * 109.46708 * 60.00556 * 16 14 13 41 41 H 1.08999 * 109.46867 * 179.97438 * 16 14 13 42 42 H 1.08999 * 109.47629 * 300.00605 * 16 14 13 43 43 H 1.09006 * 109.47032 * 64.99671 * 17 14 13 44 44 H 1.08995 * 109.47129 * 184.99818 * 17 14 13 45 45 H 1.09003 * 109.47058 * 94.03894 * 19 18 17 46 46 H 1.08997 * 109.47638 * 214.04679 * 19 18 17 47 47 H 1.09004 * 109.47421 * 334.04701 * 19 18 17 48 48 H 0.96991 * 120.00211 * 180.02562 * 23 22 20 49 49 H 1.08002 * 120.00040 * 180.22838 * 28 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9178 3.6055 0.0011 6 6 3.3031 3.6782 0.0005 7 8 3.9204 4.8898 0.0016 8 6 3.0805 6.0459 0.0027 9 6 4.0584 2.5152 -0.0063 10 6 5.5633 2.5940 -0.0130 11 6 6.0650 2.7399 1.4005 12 8 5.2781 2.7759 2.3226 13 7 7.3883 2.8305 1.6399 14 6 7.8760 2.9730 3.0141 15 1 7.2355 2.4037 3.6877 16 6 7.8515 4.4497 3.4133 17 6 9.3088 2.4440 3.1040 18 7 9.3526 1.0660 2.6085 19 6 9.1427 -0.0516 3.5321 20 6 9.5899 0.8227 1.2819 21 1 10.0848 1.5674 0.6764 22 6 9.1940 -0.3813 0.7155 23 7 8.3988 -1.1918 1.3811 24 14 9.7902 -0.8511 -0.9912 25 1 11.0634 -1.6073 -0.8801 26 1 8.7680 -1.6980 -1.6569 27 1 10.0131 0.3784 -1.7936 28 6 3.4312 1.2842 -0.0014 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2122 2.3185 0.0005 33 1 1.3296 4.5114 0.0011 34 1 2.4514 6.0370 0.8927 35 1 3.6983 6.9439 0.0030 36 1 2.4511 6.0386 -0.8873 37 1 5.9728 1.6842 -0.4518 38 1 5.8794 3.4554 -0.6015 39 1 8.0176 2.8021 0.9024 40 1 6.8307 4.8265 3.3492 41 1 8.2140 4.5556 4.4358 42 1 8.4919 5.0190 2.7396 43 1 9.9655 3.0688 2.4987 44 1 9.6402 2.4675 4.1421 45 1 8.0918 -0.3405 3.5200 46 1 9.7559 -0.8982 3.2234 47 1 9.4243 0.2524 4.5403 48 1 8.1225 -2.0332 0.9856 49 1 4.0194 0.3784 -0.0030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754313267.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:34 Heat of formation + Delta-G solvation = -82.662603 kcal Electronic energy + Delta-G solvation = -30376.008771 eV Core-core repulsion = 26304.084950 eV Total energy + Delta-G solvation = -4071.923821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.63194 -40.46811 -39.85110 -38.05495 -37.31263 -35.62785 -33.85352 -33.05833 -31.66226 -30.90134 -28.84162 -28.02605 -27.81543 -27.72116 -27.33537 -23.81332 -23.25268 -22.76762 -21.62193 -21.08609 -19.05490 -18.71457 -18.47767 -17.89319 -17.83510 -17.02623 -16.76431 -16.62450 -16.37724 -15.93984 -15.71958 -15.52054 -15.44298 -14.99592 -14.82310 -14.48916 -14.44356 -14.18763 -13.80880 -13.67393 -13.43933 -13.36502 -13.06795 -12.98315 -12.81449 -12.72071 -12.67798 -12.49070 -12.42926 -12.40334 -12.13300 -11.91752 -11.91427 -11.65670 -11.63608 -11.33776 -10.74603 -10.57179 -9.91365 -9.72947 -8.73807 -8.68381 -7.73776 -5.21189 0.19243 0.46754 1.49716 1.52095 1.59481 1.90484 2.31618 2.45720 2.51109 2.56205 2.84855 3.41907 3.63831 3.74238 3.75133 4.04719 4.10946 4.16308 4.25578 4.28347 4.35578 4.40156 4.43908 4.45287 4.49525 4.50830 4.59558 4.66209 4.71599 4.75615 4.78384 4.86148 4.88086 4.94501 5.03419 5.14084 5.20598 5.23566 5.28800 5.35374 5.43674 5.61529 5.69217 5.76024 5.87642 6.36131 6.38297 6.55519 6.87347 7.20758 7.54486 7.93196 8.39719 9.29991 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010108 B = 0.004030 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.344372 B = 6947.049250 C = 8351.146487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.344 6.344 3 C 0.081 3.919 4 C -0.165 4.165 5 C -0.166 4.166 6 C 0.098 3.902 7 O -0.332 6.332 8 C 0.019 3.981 9 C -0.068 4.068 10 C -0.089 4.089 11 C 0.520 3.480 12 O -0.593 6.593 13 N -0.689 5.689 14 C 0.123 3.877 15 H 0.034 0.966 16 C -0.144 4.144 17 C 0.142 3.858 18 N -0.611 5.611 19 C 0.180 3.820 20 C -0.246 4.246 21 H 0.083 0.917 22 C -0.047 4.047 23 N -0.937 5.937 24 Si 0.954 3.046 25 H -0.294 1.294 26 H -0.306 1.306 27 H -0.257 1.257 28 C -0.128 4.128 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.063 0.937 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.058 0.942 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.406 0.594 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.071 0.929 45 H -0.011 1.011 46 H 0.020 0.980 47 H 0.026 0.974 48 H 0.241 0.759 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.306 14.023 -4.395 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.259 6.259 3 C 0.036 3.964 4 C -0.184 4.184 5 C -0.185 4.185 6 C 0.053 3.947 7 O -0.246 6.246 8 C -0.075 4.075 9 C -0.070 4.070 10 C -0.128 4.128 11 C 0.307 3.693 12 O -0.474 6.474 13 N -0.338 5.338 14 C 0.015 3.985 15 H 0.052 0.948 16 C -0.203 4.203 17 C 0.015 3.985 18 N -0.334 5.334 19 C 0.035 3.965 20 C -0.376 4.376 21 H 0.100 0.900 22 C -0.242 4.242 23 N -0.584 5.584 24 Si 0.783 3.217 25 H -0.221 1.221 26 H -0.233 1.233 27 H -0.181 1.181 28 C -0.147 4.147 29 H 0.090 0.910 30 H 0.133 0.867 31 H 0.082 0.918 32 H 0.181 0.819 33 H 0.181 0.819 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.141 0.859 39 H 0.242 0.758 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.007 0.993 46 H 0.039 0.961 47 H 0.044 0.956 48 H 0.051 0.949 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.579 13.762 -3.778 19.699 hybrid contribution 0.023 -1.063 -0.963 1.434 sum -13.556 12.699 -4.741 19.171 Atomic orbital electron populations 1.23342 0.76383 1.05468 1.02378 1.86073 1.23633 1.26782 1.89369 1.18896 0.91646 0.85356 1.00488 1.21289 1.01218 0.90675 1.05194 1.21294 0.92373 0.99596 1.05209 1.18715 0.91480 0.85110 0.99400 1.86054 1.36923 1.12649 1.88964 1.23324 0.96382 0.85674 1.02138 1.18510 0.94297 0.90667 1.03490 1.20437 0.92167 1.05516 0.94726 1.20605 0.82640 0.74960 0.91085 1.90583 1.56545 1.53033 1.47278 1.45726 1.06249 1.72056 1.09749 1.21661 0.97851 0.96147 0.82831 0.94750 1.22000 1.01162 0.94645 1.02446 1.21382 0.92698 0.85164 0.99234 1.44122 1.83039 1.00735 1.05477 1.20477 0.96979 0.89736 0.89345 1.19475 1.29965 1.01703 0.86484 0.89969 1.25656 0.98606 0.99214 1.00723 1.70277 1.37366 1.11859 1.38882 0.85457 0.76601 0.78432 0.81175 1.22119 1.23317 1.18090 1.20176 0.92712 0.97146 1.04617 0.91024 0.86698 0.91823 0.81948 0.81878 0.92379 0.86644 0.90917 0.88564 0.85949 0.75843 0.94503 0.90263 0.90939 0.91204 0.91041 0.99269 0.96115 0.95601 0.94924 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.34 -10.30 10.50 -93.35 -0.98 -11.28 16 3 C 0.08 2.58 6.69 22.49 0.15 2.73 16 4 C -0.17 -4.12 9.03 22.35 0.20 -3.92 16 5 C -0.17 -4.12 9.03 22.35 0.20 -3.92 16 6 C 0.10 3.04 6.66 22.49 0.15 3.19 16 7 O -0.33 -9.35 9.63 -93.29 -0.90 -10.25 16 8 C 0.02 0.32 9.81 113.37 1.11 1.44 16 9 C -0.07 -2.47 4.38 -19.78 -0.09 -2.56 16 10 C -0.09 -3.24 5.55 29.10 0.16 -3.07 16 11 C 0.52 22.18 7.79 87.66 0.68 22.86 16 12 O -0.59 -29.36 15.70 -3.01 -0.05 -29.40 16 13 N -0.69 -27.45 4.49 -442.53 -1.99 -29.43 16 14 C 0.12 4.70 2.88 44.99 0.13 4.83 16 15 H 0.03 1.59 7.58 -2.39 -0.02 1.58 16 16 C -0.14 -4.29 9.48 71.98 0.68 -3.61 16 17 C 0.14 5.32 5.36 86.38 0.46 5.78 16 18 N -0.61 -29.19 2.82 -726.93 -2.05 -31.24 16 19 C 0.18 9.11 9.01 127.77 1.15 10.26 16 20 C -0.25 -12.39 8.02 84.03 0.67 -11.71 16 21 H 0.08 3.85 7.84 -2.91 -0.02 3.82 16 22 C -0.05 -2.52 5.13 84.86 0.44 -2.08 16 23 N -0.94 -55.47 10.57 21.65 0.23 -55.24 16 24 Si 0.95 43.61 29.57 68.60 2.03 45.64 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.31 -14.61 7.11 99.48 0.71 -13.91 16 27 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 28 C -0.13 -4.77 9.62 22.36 0.21 -4.56 16 29 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 30 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 0.97 7.66 -2.39 -0.02 0.95 16 32 H 0.16 2.75 6.29 -2.91 -0.02 2.73 16 33 H 0.16 2.75 6.29 -2.91 -0.02 2.73 16 34 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 35 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 0.91 7.66 -2.39 -0.02 0.90 16 37 H 0.10 3.61 8.05 -2.39 -0.02 3.59 16 38 H 0.12 3.77 7.69 -2.38 -0.02 3.75 16 39 H 0.41 15.46 7.40 -92.71 -0.69 14.77 16 40 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.07 2.35 8.03 -2.38 -0.02 2.33 16 44 H 0.07 2.39 7.86 -2.39 -0.02 2.37 16 45 H -0.01 -0.64 7.44 -2.39 -0.02 -0.66 16 46 H 0.02 1.11 7.16 -2.39 -0.02 1.09 16 47 H 0.03 1.12 7.85 -2.38 -0.02 1.10 16 48 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 49 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -75.82 400.04 4.00 -71.82 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 0.26 Total: 32.28 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 7.44 Total: 17.09 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -3.81 Total: -115.91 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -1.93 Total: -50.93 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -75.82 4.00 -71.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313267.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.839 kcal (2) G-P(sol) polarization free energy of solvation -75.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds