Wall clock time and date at job start Sat Apr 11 2020 04:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35982 * 117.00338 * 2 1 4 4 C 1.38727 * 119.99634 * 359.97438 * 3 2 1 5 5 C 1.38106 * 119.99842 * 180.02562 * 4 3 2 6 6 C 1.38715 * 120.00166 * 359.97438 * 5 4 3 7 7 O 1.35987 * 120.00006 * 180.02562 * 6 5 4 8 8 C 1.42907 * 116.99735 * 359.97438 * 7 6 5 9 9 C 1.38668 * 120.00139 * 0.27827 * 6 5 4 10 10 C 1.50707 * 120.00243 * 179.72273 * 9 6 5 11 11 C 1.50701 * 109.46733 * 85.00202 * 10 9 6 12 12 O 1.21286 * 120.00272 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99991 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99892 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.47099 * 324.99428 * 14 13 11 16 16 C 1.52998 * 109.47117 * 84.99900 * 14 13 11 17 17 C 1.53006 * 109.46675 * 204.99628 * 14 13 11 18 18 N 1.46497 * 109.47023 * 55.00142 * 17 14 13 19 19 C 1.46503 * 119.99920 * 269.99777 * 18 17 14 20 20 C 1.36932 * 120.00317 * 89.99562 * 18 17 14 21 21 H 1.08002 * 120.00057 * 23.62156 * 20 18 17 22 22 C 1.38819 * 120.00420 * 203.61343 * 20 18 17 23 23 N 1.31614 * 119.99731 * 11.31287 * 22 20 18 24 24 Si 1.86800 * 120.00046 * 191.31215 * 22 20 18 25 25 H 1.48492 * 109.47157 * 90.00263 * 24 22 20 26 26 H 1.48499 * 109.46860 * 210.00074 * 24 22 20 27 27 H 1.48499 * 109.47043 * 329.99898 * 24 22 20 28 28 C 1.38149 * 120.00080 * 359.47147 * 9 6 5 29 29 H 1.08996 * 109.46967 * 60.00503 * 1 2 3 30 30 H 1.09004 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47473 * 300.00209 * 1 2 3 32 32 H 1.07994 * 119.99815 * 359.97438 * 4 3 2 33 33 H 1.08008 * 119.99708 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47310 * 299.99839 * 8 7 6 35 35 H 1.08993 * 109.46903 * 60.00434 * 8 7 6 36 36 H 1.09003 * 109.46969 * 180.02562 * 8 7 6 37 37 H 1.08990 * 109.47574 * 204.99983 * 10 9 6 38 38 H 1.08994 * 109.47070 * 325.00952 * 10 9 6 39 39 H 0.96998 * 119.99941 * 359.97438 * 13 11 10 40 40 H 1.09004 * 109.46764 * 179.97438 * 16 14 13 41 41 H 1.08997 * 109.47023 * 299.99640 * 16 14 13 42 42 H 1.08997 * 109.47522 * 59.99786 * 16 14 13 43 43 H 1.08993 * 109.46797 * 174.99868 * 17 14 13 44 44 H 1.08992 * 109.47066 * 294.99899 * 17 14 13 45 45 H 1.09002 * 109.47540 * 94.53882 * 19 18 17 46 46 H 1.09004 * 109.47023 * 214.53804 * 19 18 17 47 47 H 1.09001 * 109.46927 * 334.53457 * 19 18 17 48 48 H 0.96997 * 120.00081 * 179.97438 * 23 22 20 49 49 H 1.08004 * 120.00687 * 180.27419 * 28 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9178 3.6056 -0.0011 6 6 3.3030 3.6782 -0.0005 7 8 3.9204 4.8898 -0.0005 8 6 3.0803 6.0459 -0.0017 9 6 4.0583 2.5152 -0.0053 10 6 5.5633 2.5941 -0.0110 11 6 6.0639 2.7418 1.4027 12 8 5.2762 2.7788 2.3242 13 7 7.3869 2.8327 1.6431 14 6 7.8736 2.9757 3.0176 15 1 7.1703 3.5796 3.5910 16 6 8.0007 1.5930 3.6600 17 6 9.2419 3.6602 3.0054 18 7 9.1454 4.9319 2.2845 19 6 9.3841 4.9749 0.8397 20 6 8.8321 6.0804 2.9611 21 1 9.0247 6.1522 4.0214 22 6 8.2669 7.1526 2.2843 23 7 7.8276 6.9960 1.0536 24 14 8.1301 8.8175 3.1203 25 1 9.3551 9.6109 2.8467 26 1 6.9445 9.5399 2.5934 27 1 7.9818 8.6251 4.5853 28 6 3.4312 1.2843 0.0005 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2123 2.3185 -0.0014 33 1 1.3295 4.5114 -0.0019 34 1 2.4518 6.0375 -0.8922 35 1 2.4505 6.0382 0.8878 36 1 3.6982 6.9439 -0.0020 37 1 5.9732 1.6838 -0.4483 38 1 5.8797 3.4547 -0.6002 39 1 8.0169 2.8027 0.9062 40 1 8.3632 1.6994 4.6825 41 1 7.0259 1.1054 3.6687 42 1 8.7039 0.9891 3.0866 43 1 9.5639 3.8468 4.0298 44 1 9.9664 3.0150 2.5086 45 1 8.4338 4.8940 0.3118 46 1 9.8655 5.9174 0.5789 47 1 10.0306 4.1453 0.5535 48 1 7.4324 7.7451 0.5807 49 1 4.0194 0.3785 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754313268.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:39 Heat of formation + Delta-G solvation = -59.532918 kcal Electronic energy + Delta-G solvation = -30426.201254 eV Core-core repulsion = 26355.280411 eV Total energy + Delta-G solvation = -4070.920843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.46681 -39.08733 -38.65599 -36.49330 -35.98325 -33.87511 -32.58691 -31.15395 -30.22963 -29.78209 -27.73524 -26.91416 -26.62230 -26.10293 -25.51358 -22.37219 -21.93178 -21.28161 -20.14585 -19.61605 -17.89730 -17.39598 -16.75788 -16.70650 -16.49225 -15.73976 -15.35698 -15.26649 -14.81574 -14.71227 -14.43060 -14.32782 -13.73112 -13.51673 -13.27633 -13.15049 -12.97521 -12.71311 -12.67567 -12.44286 -12.09440 -12.03132 -11.87918 -11.51404 -11.47414 -11.37165 -11.25280 -10.98650 -10.79154 -10.73149 -10.58472 -10.47057 -10.28918 -10.13412 -9.89823 -9.79407 -9.20990 -8.71327 -8.51774 -8.19626 -7.53371 -6.66788 -5.65977 -3.11622 1.33226 1.63124 3.26030 3.41295 3.43569 3.47470 3.48930 3.61764 3.74079 4.14661 4.55557 4.73457 4.79904 4.98548 5.02114 5.16416 5.20881 5.30068 5.33203 5.40149 5.41304 5.55472 5.56242 5.58388 5.67555 5.79623 5.81429 5.86180 5.90627 5.98201 6.09768 6.18765 6.31849 6.34035 6.35518 6.45160 6.55693 6.62963 6.71316 6.73520 7.00060 7.33529 7.36936 7.40375 7.69587 7.73564 7.86435 8.31866 8.45803 9.04493 9.29634 9.92034 10.40795 11.38756 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.003673 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.996139 B = 7620.846677 C = 9075.701788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.083 3.917 4 C -0.170 4.170 5 C -0.175 4.175 6 C 0.118 3.882 7 O -0.297 6.297 8 C 0.033 3.967 9 C -0.050 4.050 10 C -0.096 4.096 11 C 0.526 3.474 12 O -0.546 6.546 13 N -0.700 5.700 14 C 0.119 3.881 15 H 0.083 0.917 16 C -0.159 4.159 17 C 0.143 3.857 18 N -0.596 5.596 19 C 0.162 3.838 20 C -0.255 4.255 21 H 0.066 0.934 22 C 0.007 3.993 23 N -0.899 5.899 24 Si 0.901 3.099 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.281 1.281 28 C -0.100 4.100 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.393 0.607 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.040 0.960 45 H 0.033 0.967 46 H 0.041 0.959 47 H -0.007 1.007 48 H 0.250 0.750 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.502 -11.480 -5.866 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.039 3.961 4 C -0.189 4.189 5 C -0.194 4.194 6 C 0.072 3.928 7 O -0.209 6.209 8 C -0.063 4.063 9 C -0.052 4.052 10 C -0.136 4.136 11 C 0.311 3.689 12 O -0.424 6.424 13 N -0.350 5.350 14 C 0.011 3.989 15 H 0.101 0.899 16 C -0.218 4.218 17 C 0.015 3.985 18 N -0.318 5.318 19 C 0.017 3.983 20 C -0.385 4.385 21 H 0.084 0.916 22 C -0.192 4.192 23 N -0.543 5.543 24 Si 0.732 3.268 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.206 1.206 28 C -0.119 4.119 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.227 0.773 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.012 0.988 48 H 0.060 0.940 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.822 -11.430 -5.316 16.614 hybrid contribution -0.573 1.365 0.080 1.483 sum -11.396 -10.065 -5.236 16.081 Atomic orbital electron populations 1.22970 0.79030 1.03483 1.01068 1.86047 1.20800 1.26913 1.89666 1.18721 0.92048 0.83990 1.01356 1.20903 0.99526 0.91744 1.06739 1.20948 0.93245 0.98251 1.06924 1.18742 0.90576 0.85878 0.97623 1.86262 1.34777 1.11718 1.88164 1.23007 0.95789 0.87230 1.00241 1.18422 0.94338 0.89907 1.02504 1.20505 0.91624 1.04886 0.96592 1.20121 0.82560 0.75945 0.90250 1.90647 1.55310 1.50434 1.46019 1.45735 1.06448 1.73437 1.09384 1.21796 0.99860 0.94807 0.82400 0.89876 1.22153 1.01222 0.98055 1.00343 1.21185 0.92446 0.87709 0.97177 1.43859 1.81009 1.02381 1.04601 1.20845 0.97204 0.96609 0.83605 1.19144 1.34912 0.90967 0.93483 0.91623 1.24997 0.98364 0.98949 0.96886 1.70041 1.43112 1.29826 1.11364 0.86308 0.76997 0.84585 0.78945 1.21680 1.21896 1.20620 1.20009 0.91259 0.97128 1.03502 0.92996 0.88586 0.92930 0.85647 0.85364 0.93344 0.93112 0.87956 0.88645 0.87139 0.77272 0.92323 0.93030 0.93291 0.92533 0.94132 0.94879 0.93979 0.98808 0.94014 0.84836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.11 10.50 -19.68 -0.21 -4.31 16 3 C 0.08 1.19 6.69 -39.24 -0.26 0.93 16 4 C -0.17 -2.26 9.03 -39.45 -0.36 -2.61 16 5 C -0.17 -2.53 9.03 -39.45 -0.36 -2.89 16 6 C 0.12 2.02 6.66 -39.25 -0.26 1.76 16 7 O -0.30 -5.52 9.63 -19.70 -0.19 -5.71 16 8 C 0.03 0.47 9.81 101.05 0.99 1.46 16 9 C -0.05 -0.84 4.38 -104.49 -0.46 -1.30 16 10 C -0.10 -1.56 5.55 -29.03 -0.16 -1.72 16 11 C 0.53 10.45 7.79 -10.98 -0.09 10.36 16 12 O -0.55 -12.91 15.70 5.55 0.09 -12.83 16 13 N -0.70 -13.15 4.41 -53.80 -0.24 -13.39 16 14 C 0.12 2.31 2.88 -67.92 -0.20 2.12 16 15 H 0.08 1.98 7.58 -51.93 -0.39 1.58 16 16 C -0.16 -2.51 9.48 37.16 0.35 -2.16 16 17 C 0.14 2.83 5.33 -4.04 -0.02 2.81 16 18 N -0.60 -14.45 2.78 -181.12 -0.50 -14.95 16 19 C 0.16 3.76 7.61 59.85 0.46 4.22 16 20 C -0.26 -6.98 9.66 -15.06 -0.15 -7.12 16 21 H 0.07 1.79 7.85 -52.49 -0.41 1.37 16 22 C 0.01 0.19 5.13 -17.43 -0.09 0.10 16 23 N -0.90 -25.60 10.66 55.49 0.59 -25.00 16 24 Si 0.90 22.12 29.57 -169.99 -5.03 17.09 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 C -0.10 -1.52 9.62 -39.45 -0.38 -1.90 16 29 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 32 H 0.13 1.29 6.29 -52.49 -0.33 0.96 16 33 H 0.13 1.55 6.29 -52.48 -0.33 1.22 16 34 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 35 H 0.05 0.69 7.66 -51.93 -0.40 0.29 16 36 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.10 1.19 8.05 -51.93 -0.42 0.77 16 38 H 0.11 1.86 7.69 -51.93 -0.40 1.46 16 39 H 0.39 6.72 7.17 -40.82 -0.29 6.43 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 44 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 45 H 0.03 0.82 6.90 -51.93 -0.36 0.46 16 46 H 0.04 1.07 7.30 -51.93 -0.38 0.70 16 47 H -0.01 -0.13 7.84 -51.93 -0.41 -0.54 16 48 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -34.29 399.59 -7.25 -41.55 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.81 Total: 6.24 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 0.02 Total: 5.29 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.15 Total: -53.35 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.31 Total: -22.85 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.29 -7.25 -41.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313268.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.985 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds