Wall clock time and date at job start Sat Apr 11 2020 04:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35982 * 117.00338 * 2 1 4 4 C 1.38727 * 119.99634 * 359.97438 * 3 2 1 5 5 C 1.38106 * 119.99842 * 180.02562 * 4 3 2 6 6 C 1.38715 * 120.00166 * 359.97438 * 5 4 3 7 7 O 1.35987 * 120.00006 * 180.02562 * 6 5 4 8 8 C 1.42907 * 116.99735 * 359.97438 * 7 6 5 9 9 C 1.38668 * 120.00139 * 0.27827 * 6 5 4 10 10 C 1.50707 * 120.00243 * 179.72273 * 9 6 5 11 11 C 1.50701 * 109.46733 * 85.00202 * 10 9 6 12 12 O 1.21286 * 120.00272 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99991 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99892 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.47099 * 324.99428 * 14 13 11 16 16 C 1.52998 * 109.47117 * 84.99900 * 14 13 11 17 17 C 1.53006 * 109.46675 * 204.99628 * 14 13 11 18 18 N 1.46497 * 109.47023 * 55.00142 * 17 14 13 19 19 C 1.46503 * 119.99920 * 269.99777 * 18 17 14 20 20 C 1.36932 * 120.00317 * 89.99562 * 18 17 14 21 21 H 1.08002 * 120.00057 * 23.62156 * 20 18 17 22 22 C 1.38819 * 120.00420 * 203.61343 * 20 18 17 23 23 N 1.31614 * 119.99731 * 11.31287 * 22 20 18 24 24 Si 1.86800 * 120.00046 * 191.31215 * 22 20 18 25 25 H 1.48492 * 109.47157 * 90.00263 * 24 22 20 26 26 H 1.48499 * 109.46860 * 210.00074 * 24 22 20 27 27 H 1.48499 * 109.47043 * 329.99898 * 24 22 20 28 28 C 1.38149 * 120.00080 * 359.47147 * 9 6 5 29 29 H 1.08996 * 109.46967 * 60.00503 * 1 2 3 30 30 H 1.09004 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47473 * 300.00209 * 1 2 3 32 32 H 1.07994 * 119.99815 * 359.97438 * 4 3 2 33 33 H 1.08008 * 119.99708 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47310 * 299.99839 * 8 7 6 35 35 H 1.08993 * 109.46903 * 60.00434 * 8 7 6 36 36 H 1.09003 * 109.46969 * 180.02562 * 8 7 6 37 37 H 1.08990 * 109.47574 * 204.99983 * 10 9 6 38 38 H 1.08994 * 109.47070 * 325.00952 * 10 9 6 39 39 H 0.96998 * 119.99941 * 359.97438 * 13 11 10 40 40 H 1.09004 * 109.46764 * 179.97438 * 16 14 13 41 41 H 1.08997 * 109.47023 * 299.99640 * 16 14 13 42 42 H 1.08997 * 109.47522 * 59.99786 * 16 14 13 43 43 H 1.08993 * 109.46797 * 174.99868 * 17 14 13 44 44 H 1.08992 * 109.47066 * 294.99899 * 17 14 13 45 45 H 1.09002 * 109.47540 * 94.53882 * 19 18 17 46 46 H 1.09004 * 109.47023 * 214.53804 * 19 18 17 47 47 H 1.09001 * 109.46927 * 334.53457 * 19 18 17 48 48 H 0.96997 * 120.00081 * 179.97438 * 23 22 20 49 49 H 1.08004 * 120.00687 * 180.27419 * 28 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9178 3.6056 -0.0011 6 6 3.3030 3.6782 -0.0005 7 8 3.9204 4.8898 -0.0005 8 6 3.0803 6.0459 -0.0017 9 6 4.0583 2.5152 -0.0053 10 6 5.5633 2.5941 -0.0110 11 6 6.0639 2.7418 1.4027 12 8 5.2762 2.7788 2.3242 13 7 7.3869 2.8327 1.6431 14 6 7.8736 2.9757 3.0176 15 1 7.1703 3.5796 3.5910 16 6 8.0007 1.5930 3.6600 17 6 9.2419 3.6602 3.0054 18 7 9.1454 4.9319 2.2845 19 6 9.3841 4.9749 0.8397 20 6 8.8321 6.0804 2.9611 21 1 9.0247 6.1522 4.0214 22 6 8.2669 7.1526 2.2843 23 7 7.8276 6.9960 1.0536 24 14 8.1301 8.8175 3.1203 25 1 9.3551 9.6109 2.8467 26 1 6.9445 9.5399 2.5934 27 1 7.9818 8.6251 4.5853 28 6 3.4312 1.2843 0.0005 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2123 2.3185 -0.0014 33 1 1.3295 4.5114 -0.0019 34 1 2.4518 6.0375 -0.8922 35 1 2.4505 6.0382 0.8878 36 1 3.6982 6.9439 -0.0020 37 1 5.9732 1.6838 -0.4483 38 1 5.8797 3.4547 -0.6002 39 1 8.0169 2.8027 0.9062 40 1 8.3632 1.6994 4.6825 41 1 7.0259 1.1054 3.6687 42 1 8.7039 0.9891 3.0866 43 1 9.5639 3.8468 4.0298 44 1 9.9664 3.0150 2.5086 45 1 8.4338 4.8940 0.3118 46 1 9.8655 5.9174 0.5789 47 1 10.0306 4.1453 0.5535 48 1 7.4324 7.7451 0.5807 49 1 4.0194 0.3785 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754313268.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:38 Heat of formation + Delta-G solvation = -82.226972 kcal Electronic energy + Delta-G solvation = -30427.185342 eV Core-core repulsion = 26355.280411 eV Total energy + Delta-G solvation = -4071.904931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.61553 -40.48611 -39.83730 -38.05562 -37.29345 -35.65528 -33.84696 -32.99333 -31.78028 -30.88016 -28.88419 -27.94381 -27.78413 -27.74304 -27.35109 -23.82472 -23.20865 -22.70577 -21.66064 -21.14620 -19.04371 -18.72332 -18.44109 -17.98764 -17.84605 -17.02578 -16.73812 -16.57068 -16.37990 -16.03053 -15.67314 -15.48574 -15.44175 -15.15775 -14.83742 -14.48596 -14.42148 -14.07171 -13.73162 -13.67327 -13.50130 -13.38748 -13.07883 -12.97131 -12.79815 -12.72849 -12.59752 -12.51633 -12.43446 -12.40730 -12.23914 -12.01194 -11.79458 -11.66463 -11.64005 -11.33118 -10.76634 -10.58474 -9.88793 -9.80630 -8.66807 -8.64906 -7.76195 -5.22522 0.21604 0.49423 1.44182 1.44851 1.52376 1.89033 2.33428 2.46449 2.50779 2.53868 2.85034 3.36727 3.66173 3.76078 3.77068 4.02835 4.10842 4.15057 4.22465 4.31481 4.33707 4.36262 4.43299 4.45397 4.49031 4.51678 4.59573 4.66129 4.66937 4.76862 4.79937 4.86533 4.88991 4.95224 5.03785 5.17977 5.23829 5.26938 5.33602 5.41206 5.43095 5.61130 5.69332 5.81380 5.86677 6.37685 6.39603 6.57436 6.81591 7.23267 7.52715 7.95053 8.36216 9.25345 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.003673 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.996139 B = 7620.846677 C = 9075.701788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.081 3.919 4 C -0.167 4.167 5 C -0.176 4.176 6 C 0.086 3.914 7 O -0.334 6.334 8 C 0.028 3.972 9 C -0.072 4.072 10 C -0.086 4.086 11 C 0.518 3.482 12 O -0.591 6.591 13 N -0.696 5.696 14 C 0.125 3.875 15 H 0.030 0.970 16 C -0.144 4.144 17 C 0.143 3.857 18 N -0.610 5.610 19 C 0.175 3.825 20 C -0.264 4.264 21 H 0.062 0.938 22 C -0.045 4.045 23 N -0.920 5.920 24 Si 0.956 3.044 25 H -0.284 1.284 26 H -0.298 1.298 27 H -0.277 1.277 28 C -0.112 4.112 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.058 0.942 32 H 0.159 0.841 33 H 0.149 0.851 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.099 0.901 39 H 0.403 0.597 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.013 0.987 46 H 0.010 0.990 47 H 0.036 0.964 48 H 0.244 0.756 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.008 -13.245 -6.159 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.036 3.964 4 C -0.185 4.185 5 C -0.195 4.195 6 C 0.041 3.959 7 O -0.248 6.248 8 C -0.067 4.067 9 C -0.073 4.073 10 C -0.126 4.126 11 C 0.306 3.694 12 O -0.472 6.472 13 N -0.345 5.345 14 C 0.017 3.983 15 H 0.048 0.952 16 C -0.203 4.203 17 C 0.016 3.984 18 N -0.333 5.333 19 C 0.030 3.970 20 C -0.394 4.394 21 H 0.080 0.920 22 C -0.241 4.241 23 N -0.566 5.566 24 Si 0.785 3.215 25 H -0.211 1.211 26 H -0.224 1.224 27 H -0.202 1.202 28 C -0.130 4.130 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.077 0.923 32 H 0.176 0.824 33 H 0.167 0.833 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.151 0.849 38 H 0.117 0.883 39 H 0.239 0.761 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.031 0.969 46 H 0.029 0.971 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.301 -13.224 -5.609 18.277 hybrid contribution -0.469 1.824 0.204 1.894 sum -11.770 -11.399 -5.405 17.254 Atomic orbital electron populations 1.23323 0.76664 1.05536 1.02081 1.86037 1.23257 1.26135 1.89365 1.18873 0.92053 0.84977 1.00475 1.21261 1.01170 0.90836 1.05243 1.21236 0.92426 0.99758 1.06040 1.19082 0.91906 0.85496 0.99392 1.86188 1.36802 1.13037 1.88815 1.23138 0.95713 0.85873 1.01936 1.18595 0.94458 0.90592 1.03672 1.20461 0.92045 1.06123 0.93970 1.20771 0.82418 0.74900 0.91323 1.90612 1.56363 1.52498 1.47689 1.45737 1.06550 1.72743 1.09513 1.21601 0.97995 0.96247 0.82465 0.95174 1.22007 1.01353 0.95609 1.01359 1.21354 0.93233 0.86414 0.97400 1.44053 1.80906 1.03267 1.05048 1.20630 0.96675 0.96599 0.83080 1.19397 1.34120 0.92375 0.93543 0.92042 1.25645 0.98943 1.01829 0.97681 1.70191 1.44034 1.30055 1.12276 0.85444 0.76675 0.81232 0.78128 1.21123 1.22446 1.20242 1.20194 0.92222 0.96983 1.03608 0.91489 0.86213 0.92286 0.82387 0.83297 0.90296 0.92645 0.88961 0.84861 0.88286 0.76122 0.90786 0.94381 0.90376 0.92178 0.90520 0.96854 0.97082 0.94593 0.94713 0.83620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -7.87 10.50 -93.35 -0.98 -8.85 16 3 C 0.08 2.20 6.69 22.49 0.15 2.35 16 4 C -0.17 -4.10 9.03 22.36 0.20 -3.90 16 5 C -0.18 -4.95 9.03 22.35 0.20 -4.75 16 6 C 0.09 3.02 6.66 22.49 0.15 3.17 16 7 O -0.33 -12.99 9.63 -93.40 -0.90 -13.89 16 8 C 0.03 0.83 9.81 113.37 1.11 1.94 16 9 C -0.07 -2.43 4.38 -19.78 -0.09 -2.52 16 10 C -0.09 -2.84 5.55 29.10 0.16 -2.68 16 11 C 0.52 21.05 7.79 87.66 0.68 21.73 16 12 O -0.59 -28.99 15.70 -3.05 -0.05 -29.04 16 13 N -0.70 -26.02 4.41 -442.51 -1.95 -27.98 16 14 C 0.12 4.82 2.88 44.99 0.13 4.94 16 15 H 0.03 1.49 7.58 -2.39 -0.02 1.47 16 16 C -0.14 -4.32 9.48 71.98 0.68 -3.64 16 17 C 0.14 5.45 5.33 86.38 0.46 5.91 16 18 N -0.61 -29.45 2.78 -726.93 -2.02 -31.47 16 19 C 0.17 8.07 7.61 127.77 0.97 9.04 16 20 C -0.26 -14.60 9.66 84.04 0.81 -13.79 16 21 H 0.06 3.38 7.85 -2.91 -0.02 3.36 16 22 C -0.04 -2.54 5.13 84.86 0.44 -2.10 16 23 N -0.92 -53.90 10.66 21.65 0.23 -53.67 16 24 Si 0.96 46.36 29.57 68.60 2.03 48.39 16 25 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 27 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 28 C -0.11 -3.32 9.62 22.35 0.21 -3.11 16 29 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 30 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 0.75 7.66 -2.39 -0.02 0.74 16 32 H 0.16 2.73 6.29 -2.91 -0.02 2.71 16 33 H 0.15 3.39 6.29 -2.91 -0.02 3.37 16 34 H 0.08 1.78 7.66 -2.39 -0.02 1.76 16 35 H 0.05 1.53 7.66 -2.39 -0.02 1.51 16 36 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.13 3.18 8.05 -2.39 -0.02 3.17 16 38 H 0.10 3.47 7.69 -2.39 -0.02 3.45 16 39 H 0.40 13.34 7.17 -92.71 -0.67 12.67 16 40 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.06 2.25 8.03 -2.39 -0.02 2.23 16 44 H 0.08 2.40 7.86 -2.39 -0.02 2.38 16 45 H 0.01 0.66 6.90 -2.39 -0.02 0.65 16 46 H 0.01 0.54 7.30 -2.38 -0.02 0.53 16 47 H 0.04 1.33 7.84 -2.39 -0.02 1.31 16 48 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 49 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -77.59 399.59 4.04 -73.55 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.29 Total: 28.97 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 7.39 Total: 13.98 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -3.74 Total: -113.12 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -1.93 Total: -51.78 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -77.59 4.04 -73.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313268.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.676 kcal (2) G-P(sol) polarization free energy of solvation -77.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds