Wall clock time and date at job start Sat Apr 11 2020 04:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35986 * 116.99546 * 2 1 4 4 C 1.38700 * 119.99538 * 180.02562 * 3 2 1 5 5 C 1.38129 * 119.99750 * 180.02562 * 4 3 2 6 6 C 1.38699 * 120.00086 * 359.97438 * 5 4 3 7 7 O 1.35983 * 120.00092 * 179.97438 * 6 5 4 8 8 C 1.42906 * 117.00151 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47091 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.46652 * 179.97438 * 9 8 7 11 11 O 1.21275 * 120.00649 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99707 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00160 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.46961 * 34.99909 * 13 12 10 15 15 C 1.53000 * 109.46876 * 274.99777 * 13 12 10 16 16 C 1.52995 * 109.47171 * 155.00080 * 13 12 10 17 17 N 1.46505 * 109.46917 * 304.99621 * 16 13 12 18 18 C 1.46497 * 120.00226 * 269.72687 * 17 16 13 19 19 C 1.36943 * 119.99527 * 90.00372 * 17 16 13 20 20 H 1.07998 * 119.99786 * 342.71025 * 19 17 16 21 21 C 1.38811 * 119.99659 * 162.70595 * 19 17 16 22 22 N 1.31620 * 120.00209 * 345.44998 * 21 19 17 23 23 Si 1.86803 * 119.99737 * 165.44897 * 21 19 17 24 24 H 1.48500 * 109.47189 * 60.00568 * 23 21 19 25 25 H 1.48506 * 109.46997 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47277 * 300.00406 * 23 21 19 27 27 C 1.38700 * 120.00060 * 0.25867 * 6 5 4 28 28 C 1.38129 * 119.99739 * 359.48587 * 27 6 5 29 29 H 1.08994 * 109.47503 * 300.00172 * 1 2 3 30 30 H 1.09004 * 109.47252 * 60.00681 * 1 2 3 31 31 H 1.09000 * 109.46921 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00641 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.00613 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47158 * 59.99507 * 8 7 6 35 35 H 1.09003 * 109.46683 * 299.99420 * 8 7 6 36 36 H 1.09001 * 109.47519 * 59.99732 * 9 8 7 37 37 H 1.09003 * 109.46886 * 299.99299 * 9 8 7 38 38 H 0.97003 * 120.00441 * 359.97438 * 12 10 9 39 39 H 1.08990 * 109.47473 * 300.00152 * 15 13 12 40 40 H 1.09007 * 109.46844 * 60.00180 * 15 13 12 41 41 H 1.09004 * 109.46992 * 179.97438 * 15 13 12 42 42 H 1.09004 * 109.46985 * 185.00112 * 16 13 12 43 43 H 1.08998 * 109.47520 * 64.99847 * 16 13 12 44 44 H 1.09003 * 109.46914 * 265.35094 * 18 17 16 45 45 H 1.08995 * 109.47083 * 25.34309 * 18 17 16 46 46 H 1.08998 * 109.47038 * 145.35048 * 18 17 16 47 47 H 0.96997 * 119.99749 * 179.97438 * 22 21 19 48 48 H 1.07999 * 120.00067 * 179.72302 * 27 6 5 49 49 H 1.08000 * 120.00427 * 180.23380 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2117 0.0000 4 6 3.4313 1.2843 -0.0005 5 6 4.0584 2.5151 0.0000 6 6 3.3029 3.6783 0.0005 7 8 3.9202 4.8899 0.0016 8 6 3.0802 6.0460 0.0027 9 6 3.9474 7.3065 0.0044 10 6 3.0615 8.5256 0.0049 11 8 1.8554 8.3989 0.0035 12 7 3.6097 9.7569 0.0069 13 6 2.7486 10.9421 0.0068 14 1 1.8531 10.7406 0.5948 15 6 2.3492 11.2822 -1.4305 16 6 3.5055 12.1225 0.6187 17 7 3.9912 11.7535 1.9507 18 6 3.1571 12.0014 3.1292 19 6 5.2274 11.1821 2.0946 20 1 5.7250 10.7491 1.2394 21 6 5.8408 11.1594 3.3396 22 7 5.3863 11.9223 4.3112 23 14 7.3113 10.0463 3.6362 24 1 8.4066 10.4140 2.7033 25 1 7.7787 10.2061 5.0367 26 1 6.9173 8.6334 3.4045 27 6 1.9178 3.6057 0.0060 28 6 1.2908 2.3749 0.0001 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 4.0196 0.3786 -0.0005 33 1 5.1369 2.5717 0.0000 34 1 2.4509 6.0371 0.8926 35 1 2.4510 6.0387 -0.8874 36 1 4.5771 7.3157 -0.8853 37 1 4.5763 7.3136 0.8947 38 1 4.5744 9.8584 0.0084 39 1 3.2446 11.4836 -2.0184 40 1 1.8099 10.4412 -1.8664 41 1 1.7081 12.1638 -1.4305 42 1 2.8371 12.9798 0.7003 43 1 4.3517 12.3809 -0.0180 44 1 3.4311 12.9583 3.5735 45 1 2.1083 12.0253 2.8335 46 1 3.3113 11.2052 3.8574 47 1 5.8147 11.9061 5.1813 48 1 1.3296 4.5114 0.0109 49 1 0.2123 2.3183 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754333173.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:42 Heat of formation + Delta-G solvation = -64.332574 kcal Electronic energy + Delta-G solvation = -28743.160106 eV Core-core repulsion = 24672.031134 eV Total energy + Delta-G solvation = -4071.128971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.58178 -39.57797 -38.95554 -36.67293 -36.32514 -34.10279 -32.24829 -31.41162 -31.15093 -30.05594 -29.17820 -27.31278 -26.23333 -25.66756 -24.79856 -22.63979 -22.02582 -21.61365 -20.23859 -19.84397 -18.67647 -17.94826 -16.90783 -16.67760 -16.36031 -16.09558 -15.93814 -15.61512 -15.08643 -14.95867 -14.62302 -14.51620 -13.86070 -13.76899 -13.61405 -13.28475 -13.24627 -12.98212 -12.86555 -12.81142 -12.35814 -12.16530 -12.10723 -11.92588 -11.65757 -11.58949 -11.25663 -11.08998 -10.89398 -10.85165 -10.82512 -10.45655 -10.44094 -10.33051 -10.07594 -9.90224 -9.47117 -9.27633 -8.58852 -8.49433 -7.89714 -6.85993 -5.77985 -3.20192 1.05923 1.29589 2.89818 3.03623 3.08772 3.33410 3.39179 3.41207 3.55316 3.90828 4.43238 4.51604 4.59816 4.77563 4.84686 4.87196 4.97484 4.99310 5.14596 5.16861 5.23616 5.27103 5.30499 5.43273 5.47073 5.58116 5.64987 5.74643 5.79395 5.83471 5.90026 5.90621 6.09546 6.10141 6.15874 6.16857 6.38526 6.40648 6.42309 6.73084 6.78644 7.06487 7.08525 7.35807 7.40135 7.60239 7.76203 8.04301 8.30279 8.67056 9.16424 9.80937 10.28849 11.26770 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.002405 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.251055 B =11638.564908 C =12909.219295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.084 3.916 4 C -0.112 4.112 5 C -0.114 4.114 6 C 0.103 3.897 7 O -0.316 6.316 8 C 0.079 3.921 9 C -0.143 4.143 10 C 0.520 3.480 11 O -0.563 6.563 12 N -0.691 5.691 13 C 0.117 3.883 14 H 0.077 0.923 15 C -0.158 4.158 16 C 0.141 3.859 17 N -0.601 5.601 18 C 0.165 3.835 19 C -0.252 4.252 20 H 0.067 0.933 21 C 0.001 3.999 22 N -0.905 5.905 23 Si 0.900 3.100 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.283 1.283 27 C -0.168 4.168 28 C -0.167 4.167 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.405 0.595 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.026 0.974 45 H -0.005 1.005 46 H 0.048 0.952 47 H 0.253 0.747 48 H 0.135 0.865 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.064 -16.719 -11.123 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.039 3.961 4 C -0.131 4.131 5 C -0.133 4.133 6 C 0.058 3.942 7 O -0.231 6.231 8 C 0.004 3.996 9 C -0.183 4.183 10 C 0.306 3.694 11 O -0.443 6.443 12 N -0.341 5.341 13 C 0.010 3.990 14 H 0.095 0.905 15 C -0.217 4.217 16 C 0.013 3.987 17 N -0.323 5.323 18 C 0.021 3.979 19 C -0.381 4.381 20 H 0.085 0.915 21 C -0.197 4.197 22 N -0.550 5.550 23 Si 0.730 3.270 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.210 1.210 27 C -0.187 4.187 28 C -0.185 4.185 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.241 0.759 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.044 0.956 45 H 0.013 0.987 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.153 0.847 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.556 -16.870 -10.901 21.460 hybrid contribution 0.783 -0.265 0.374 0.908 sum -6.773 -17.135 -10.527 21.220 Atomic orbital electron populations 1.23023 0.78632 1.03765 1.01320 1.86058 1.21145 1.26780 1.89445 1.18900 0.92327 0.84156 1.00718 1.20204 0.91291 0.97804 1.03805 1.20265 1.00342 0.88981 1.03709 1.18897 0.90950 0.85585 0.98800 1.86010 1.36170 1.12061 1.88811 1.22427 0.92366 0.82163 1.02688 1.21478 0.99339 0.91350 1.06127 1.20061 0.88482 0.84703 0.76145 1.90647 1.15068 1.86910 1.51655 1.45894 1.10990 1.04778 1.72464 1.21894 0.94980 0.86891 0.95284 0.90466 1.22123 1.01061 1.01275 0.97274 1.21047 0.96752 0.92888 0.88027 1.43885 1.16416 1.71630 1.00396 1.20799 0.88078 1.00534 0.88506 1.18990 0.94091 1.30469 0.94588 0.91537 1.24914 0.98414 0.99145 0.97269 1.70092 1.42495 1.39033 1.03425 0.86413 0.82505 0.80858 0.77260 1.20937 1.21629 1.20978 1.21184 0.93605 0.98691 1.05225 1.21039 1.00020 0.91664 1.05825 0.92728 0.92768 0.88371 0.84576 0.84352 0.91122 0.91338 0.88165 0.87419 0.75904 0.92849 0.92935 0.92077 0.92963 0.93029 0.95557 0.98657 0.93355 0.93655 0.84719 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.25 10.50 -19.70 -0.21 -3.46 16 3 C 0.08 0.92 6.69 -39.24 -0.26 0.66 16 4 C -0.11 -1.19 9.98 -39.45 -0.39 -1.58 16 5 C -0.11 -1.29 9.98 -39.45 -0.39 -1.68 16 6 C 0.10 1.32 6.69 -39.24 -0.26 1.06 16 7 O -0.32 -4.35 10.14 -19.69 -0.20 -4.55 16 8 C 0.08 1.07 4.03 37.16 0.15 1.22 16 9 C -0.14 -1.97 6.07 -27.88 -0.17 -2.14 16 10 C 0.52 8.75 7.79 -10.98 -0.09 8.67 16 11 O -0.56 -10.95 15.64 5.56 0.09 -10.86 16 12 N -0.69 -11.65 4.49 -53.81 -0.24 -11.89 16 13 C 0.12 2.00 2.88 -67.93 -0.20 1.80 16 14 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 15 C -0.16 -2.21 9.48 37.16 0.35 -1.86 16 16 C 0.14 2.65 5.30 -4.04 -0.02 2.63 16 17 N -0.60 -14.10 2.82 -181.12 -0.51 -14.61 16 18 C 0.17 4.02 8.97 59.85 0.54 4.56 16 19 C -0.25 -6.31 8.80 -15.06 -0.13 -6.44 16 20 H 0.07 1.54 6.40 -52.49 -0.34 1.21 16 21 C 0.00 0.03 5.09 -17.43 -0.09 -0.06 16 22 N -0.91 -25.64 10.45 55.49 0.58 -25.06 16 23 Si 0.90 20.88 29.58 -169.99 -5.03 15.85 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C -0.17 -2.01 9.03 -39.45 -0.36 -2.36 16 28 C -0.17 -1.78 9.03 -39.45 -0.36 -2.14 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.07 1.01 7.61 -51.93 -0.40 0.61 16 35 H 0.07 0.89 7.63 -51.93 -0.40 0.49 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 38 H 0.40 6.64 6.58 -40.82 -0.27 6.37 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 43 H 0.05 0.93 8.04 -51.93 -0.42 0.52 16 44 H 0.03 0.68 7.51 -51.93 -0.39 0.29 16 45 H -0.01 -0.11 8.04 -51.93 -0.42 -0.53 16 46 H 0.05 1.28 6.95 -51.93 -0.36 0.92 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.14 1.53 6.29 -52.49 -0.33 1.20 16 49 H 0.13 1.09 6.29 -52.49 -0.33 0.76 16 LS Contribution 400.16 15.07 6.03 6.03 Total: -1.00 -31.32 400.16 -7.94 -39.26 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.77 Total: 5.78 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -0.69 Total: 3.49 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.17 Total: -51.56 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.32 Total: -18.86 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.32 -7.94 -39.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754333173.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.070 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds