Wall clock time and date at job start Sat Apr 11 2020 04:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35986 * 116.99546 * 2 1 4 4 C 1.38700 * 119.99538 * 180.02562 * 3 2 1 5 5 C 1.38129 * 119.99750 * 180.02562 * 4 3 2 6 6 C 1.38699 * 120.00086 * 359.97438 * 5 4 3 7 7 O 1.35983 * 120.00092 * 179.97438 * 6 5 4 8 8 C 1.42906 * 117.00151 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47091 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.46652 * 179.97438 * 9 8 7 11 11 O 1.21275 * 120.00649 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99707 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00160 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.46961 * 34.99909 * 13 12 10 15 15 C 1.53000 * 109.46876 * 274.99777 * 13 12 10 16 16 C 1.52995 * 109.47171 * 155.00080 * 13 12 10 17 17 N 1.46505 * 109.46917 * 304.99621 * 16 13 12 18 18 C 1.46497 * 120.00226 * 269.72687 * 17 16 13 19 19 C 1.36943 * 119.99527 * 90.00372 * 17 16 13 20 20 H 1.07998 * 119.99786 * 342.71025 * 19 17 16 21 21 C 1.38811 * 119.99659 * 162.70595 * 19 17 16 22 22 N 1.31620 * 120.00209 * 345.44998 * 21 19 17 23 23 Si 1.86803 * 119.99737 * 165.44897 * 21 19 17 24 24 H 1.48500 * 109.47189 * 60.00568 * 23 21 19 25 25 H 1.48506 * 109.46997 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47277 * 300.00406 * 23 21 19 27 27 C 1.38700 * 120.00060 * 0.25867 * 6 5 4 28 28 C 1.38129 * 119.99739 * 359.48587 * 27 6 5 29 29 H 1.08994 * 109.47503 * 300.00172 * 1 2 3 30 30 H 1.09004 * 109.47252 * 60.00681 * 1 2 3 31 31 H 1.09000 * 109.46921 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00641 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.00613 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47158 * 59.99507 * 8 7 6 35 35 H 1.09003 * 109.46683 * 299.99420 * 8 7 6 36 36 H 1.09001 * 109.47519 * 59.99732 * 9 8 7 37 37 H 1.09003 * 109.46886 * 299.99299 * 9 8 7 38 38 H 0.97003 * 120.00441 * 359.97438 * 12 10 9 39 39 H 1.08990 * 109.47473 * 300.00152 * 15 13 12 40 40 H 1.09007 * 109.46844 * 60.00180 * 15 13 12 41 41 H 1.09004 * 109.46992 * 179.97438 * 15 13 12 42 42 H 1.09004 * 109.46985 * 185.00112 * 16 13 12 43 43 H 1.08998 * 109.47520 * 64.99847 * 16 13 12 44 44 H 1.09003 * 109.46914 * 265.35094 * 18 17 16 45 45 H 1.08995 * 109.47083 * 25.34309 * 18 17 16 46 46 H 1.08998 * 109.47038 * 145.35048 * 18 17 16 47 47 H 0.96997 * 119.99749 * 179.97438 * 22 21 19 48 48 H 1.07999 * 120.00067 * 179.72302 * 27 6 5 49 49 H 1.08000 * 120.00427 * 180.23380 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2117 0.0000 4 6 3.4313 1.2843 -0.0005 5 6 4.0584 2.5151 0.0000 6 6 3.3029 3.6783 0.0005 7 8 3.9202 4.8899 0.0016 8 6 3.0802 6.0460 0.0027 9 6 3.9474 7.3065 0.0044 10 6 3.0615 8.5256 0.0049 11 8 1.8554 8.3989 0.0035 12 7 3.6097 9.7569 0.0069 13 6 2.7486 10.9421 0.0068 14 1 1.8531 10.7406 0.5948 15 6 2.3492 11.2822 -1.4305 16 6 3.5055 12.1225 0.6187 17 7 3.9912 11.7535 1.9507 18 6 3.1571 12.0014 3.1292 19 6 5.2274 11.1821 2.0946 20 1 5.7250 10.7491 1.2394 21 6 5.8408 11.1594 3.3396 22 7 5.3863 11.9223 4.3112 23 14 7.3113 10.0463 3.6362 24 1 8.4066 10.4140 2.7033 25 1 7.7787 10.2061 5.0367 26 1 6.9173 8.6334 3.4045 27 6 1.9178 3.6057 0.0060 28 6 1.2908 2.3749 0.0001 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 4.0196 0.3786 -0.0005 33 1 5.1369 2.5717 0.0000 34 1 2.4509 6.0371 0.8926 35 1 2.4510 6.0387 -0.8874 36 1 4.5771 7.3157 -0.8853 37 1 4.5763 7.3136 0.8947 38 1 4.5744 9.8584 0.0084 39 1 3.2446 11.4836 -2.0184 40 1 1.8099 10.4412 -1.8664 41 1 1.7081 12.1638 -1.4305 42 1 2.8371 12.9798 0.7003 43 1 4.3517 12.3809 -0.0180 44 1 3.4311 12.9583 3.5735 45 1 2.1083 12.0253 2.8335 46 1 3.3113 11.2052 3.8574 47 1 5.8147 11.9061 5.1813 48 1 1.3296 4.5114 0.0109 49 1 0.2123 2.3183 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754333173.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:41 Heat of formation + Delta-G solvation = -83.237241 kcal Electronic energy + Delta-G solvation = -28743.979873 eV Core-core repulsion = 24672.031134 eV Total energy + Delta-G solvation = -4071.948739 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.45947 -40.81825 -39.90963 -38.12122 -37.35233 -35.75223 -33.52887 -32.86887 -32.18840 -31.40550 -30.03785 -28.07039 -27.94655 -27.36643 -25.88534 -23.74798 -23.24396 -22.76139 -21.66323 -21.21951 -19.58179 -18.90078 -18.60686 -17.66755 -17.42992 -17.35389 -16.95034 -16.90853 -16.61166 -15.88120 -15.80092 -15.55872 -15.35860 -14.98065 -14.81415 -14.62349 -14.48166 -14.25177 -14.01988 -13.71245 -13.62219 -13.45505 -13.13114 -13.01086 -12.93068 -12.78340 -12.60724 -12.59217 -12.48081 -12.16697 -12.15534 -12.04592 -11.86116 -11.76202 -11.66465 -11.35726 -10.85473 -10.55621 -10.11195 -9.88848 -8.79418 -8.76804 -7.77529 -5.20367 0.22253 0.42217 1.49982 1.53169 1.57254 1.69365 1.87254 2.39386 2.54075 2.69679 2.71029 3.37010 3.62159 3.70543 3.80160 3.80717 3.92114 4.01486 4.12643 4.17317 4.28790 4.35767 4.38987 4.42969 4.48000 4.49971 4.54041 4.70849 4.73275 4.74377 4.77553 4.85161 4.88555 4.90621 5.01588 5.04598 5.18418 5.26268 5.31150 5.33609 5.46596 5.55324 5.61298 5.70580 5.76320 6.26918 6.33024 6.47698 6.69944 7.16759 7.35024 7.90448 8.35201 9.26799 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.002405 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.251055 B =11638.564908 C =12909.219295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.079 3.921 4 C -0.116 4.116 5 C -0.117 4.117 6 C 0.077 3.923 7 O -0.324 6.324 8 C 0.086 3.914 9 C -0.135 4.135 10 C 0.517 3.483 11 O -0.592 6.592 12 N -0.693 5.693 13 C 0.124 3.876 14 H 0.050 0.950 15 C -0.147 4.147 16 C 0.141 3.859 17 N -0.615 5.615 18 C 0.181 3.819 19 C -0.241 4.241 20 H 0.088 0.912 21 C -0.062 4.062 22 N -0.944 5.944 23 Si 0.959 3.041 24 H -0.271 1.271 25 H -0.307 1.307 26 H -0.277 1.277 27 C -0.178 4.178 28 C -0.171 4.171 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.128 0.872 37 H 0.105 0.895 38 H 0.408 0.592 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.002 0.998 45 H 0.018 0.982 46 H 0.016 0.984 47 H 0.243 0.757 48 H 0.134 0.866 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 -18.042 -13.173 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.034 3.966 4 C -0.135 4.135 5 C -0.135 4.135 6 C 0.032 3.968 7 O -0.239 6.239 8 C 0.010 3.990 9 C -0.175 4.175 10 C 0.304 3.696 11 O -0.474 6.474 12 N -0.343 5.343 13 C 0.017 3.983 14 H 0.068 0.932 15 C -0.205 4.205 16 C 0.014 3.986 17 N -0.338 5.338 18 C 0.035 3.965 19 C -0.371 4.371 20 H 0.105 0.895 21 C -0.256 4.256 22 N -0.592 5.592 23 Si 0.788 3.212 24 H -0.196 1.196 25 H -0.234 1.234 26 H -0.203 1.203 27 C -0.197 4.197 28 C -0.189 4.189 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.173 0.827 33 H 0.170 0.830 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.146 0.854 37 H 0.123 0.877 38 H 0.245 0.755 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.020 0.980 45 H 0.037 0.963 46 H 0.035 0.965 47 H 0.052 0.948 48 H 0.151 0.849 49 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.343 -18.205 -13.009 23.549 hybrid contribution 0.600 0.094 0.948 1.126 sum -6.743 -18.111 -12.061 22.780 Atomic orbital electron populations 1.23312 0.76786 1.05541 1.01994 1.86048 1.23117 1.26305 1.89235 1.19103 0.92747 0.84609 1.00135 1.20482 0.91577 0.98274 1.03149 1.20485 1.01091 0.88732 1.03217 1.19171 0.91582 0.85588 1.00434 1.85969 1.36326 1.12346 1.89271 1.22282 0.92197 0.82330 1.02182 1.21421 0.98864 0.89925 1.07244 1.20517 0.88404 0.85370 0.75265 1.90633 1.16517 1.87329 1.52953 1.45927 1.11114 1.04893 1.72331 1.21682 0.93547 0.86227 0.96856 0.93168 1.22010 1.02032 1.01685 0.94822 1.21244 0.97545 0.93943 0.85829 1.44126 1.16050 1.71796 1.01825 1.20486 0.89475 0.98022 0.88475 1.19478 0.94069 1.28702 0.94819 0.89454 1.25671 1.01369 1.00939 0.97634 1.70271 1.44204 1.41231 1.03482 0.85454 0.80072 0.79435 0.76249 1.19605 1.23366 1.20311 1.21277 0.93519 0.99247 1.05630 1.21254 1.01134 0.91163 1.05362 0.92174 0.91930 0.86174 0.82669 0.83016 0.92543 0.91043 0.85419 0.87706 0.75514 0.91148 0.93605 0.90364 0.91671 0.91707 0.97955 0.96317 0.96507 0.94758 0.84860 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.20 10.50 -93.40 -0.98 -7.18 16 3 C 0.08 1.63 6.69 22.49 0.15 1.79 16 4 C -0.12 -2.30 9.98 22.35 0.22 -2.08 16 5 C -0.12 -2.51 9.98 22.35 0.22 -2.29 16 6 C 0.08 1.94 6.69 22.49 0.15 2.09 16 7 O -0.32 -8.72 10.14 -93.36 -0.95 -9.66 16 8 C 0.09 2.28 4.03 71.98 0.29 2.57 16 9 C -0.13 -3.53 6.07 29.85 0.18 -3.35 16 10 C 0.52 16.88 7.79 87.66 0.68 17.56 16 11 O -0.59 -22.87 15.64 -3.02 -0.05 -22.91 16 12 N -0.69 -22.19 4.49 -442.53 -1.99 -24.18 16 13 C 0.12 4.03 2.88 44.99 0.13 4.16 16 14 H 0.05 1.92 7.58 -2.39 -0.02 1.90 16 15 C -0.15 -3.70 9.48 71.98 0.68 -3.02 16 16 C 0.14 5.00 5.30 86.38 0.46 5.46 16 17 N -0.62 -28.41 2.82 -726.94 -2.05 -30.47 16 18 C 0.18 8.90 8.97 127.77 1.15 10.04 16 19 C -0.24 -11.80 8.80 84.03 0.74 -11.06 16 20 H 0.09 3.84 6.40 -2.91 -0.02 3.83 16 21 C -0.06 -3.31 5.09 84.86 0.43 -2.87 16 22 N -0.94 -54.79 10.45 21.65 0.23 -54.56 16 23 Si 0.96 42.97 29.58 68.60 2.03 44.99 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.31 -14.45 7.11 99.48 0.71 -13.75 16 26 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 27 C -0.18 -4.19 9.03 22.35 0.20 -3.99 16 28 C -0.17 -3.48 9.03 22.35 0.20 -3.28 16 29 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 30 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 31 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 34 H 0.06 1.64 7.61 -2.39 -0.02 1.62 16 35 H 0.07 1.83 7.63 -2.39 -0.02 1.81 16 36 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.41 12.44 6.58 -92.71 -0.61 11.83 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.07 2.15 8.07 -2.38 -0.02 2.14 16 43 H 0.06 2.15 8.04 -2.39 -0.02 2.13 16 44 H 0.00 0.12 7.51 -2.39 -0.02 0.10 16 45 H 0.02 0.80 8.04 -2.39 -0.02 0.78 16 46 H 0.02 0.90 6.95 -2.39 -0.02 0.88 16 47 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 48 H 0.13 3.07 6.29 -2.91 -0.02 3.05 16 49 H 0.15 2.30 6.29 -2.91 -0.02 2.28 16 Total: -1.00 -67.89 400.16 3.59 -64.31 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.34 Total: 26.61 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 7.01 Total: 13.04 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -3.81 Total: -109.20 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -1.97 Total: -39.75 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -67.89 3.59 -64.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754333173.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.930 kcal (2) G-P(sol) polarization free energy of solvation -67.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds