Wall clock time and date at job start Sat Apr 11 2020 04:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35985 * 116.99836 * 2 1 4 4 C 1.38695 * 120.00212 * 179.97438 * 3 2 1 5 5 C 1.38132 * 120.00115 * 180.02562 * 4 3 2 6 6 C 1.38699 * 120.00173 * 0.02562 * 5 4 3 7 7 O 1.35981 * 120.00230 * 179.97438 * 6 5 4 8 8 C 1.42896 * 116.99995 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46907 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47020 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99943 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99899 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99656 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.47139 * 324.99992 * 13 12 10 15 15 C 1.52999 * 109.47375 * 85.00160 * 13 12 10 16 16 C 1.53001 * 109.46705 * 205.00113 * 13 12 10 17 17 N 1.46503 * 109.47267 * 55.00210 * 16 13 12 18 18 C 1.46503 * 119.99571 * 269.99707 * 17 16 13 19 19 C 1.36929 * 120.00258 * 89.99797 * 17 16 13 20 20 H 1.08002 * 120.00397 * 337.18711 * 19 17 16 21 21 C 1.38816 * 120.00205 * 156.91102 * 19 17 16 22 22 N 1.31615 * 120.00337 * 156.32162 * 21 19 17 23 23 Si 1.86796 * 119.99527 * 336.32454 * 21 19 17 24 24 H 1.48500 * 109.47353 * 84.94216 * 23 21 19 25 25 H 1.48508 * 109.46996 * 204.94011 * 23 21 19 26 26 H 1.48503 * 109.47390 * 324.93596 * 23 21 19 27 27 C 1.38699 * 119.99484 * 0.25742 * 6 5 4 28 28 C 1.38131 * 120.00478 * 359.48656 * 27 6 5 29 29 H 1.08996 * 109.47329 * 60.00230 * 1 2 3 30 30 H 1.09000 * 109.46725 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47126 * 299.99675 * 1 2 3 32 32 H 1.08002 * 119.99738 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.99813 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47379 * 59.99998 * 8 7 6 35 35 H 1.09000 * 109.47087 * 299.99618 * 8 7 6 36 36 H 1.09000 * 109.47446 * 59.99618 * 9 8 7 37 37 H 1.09006 * 109.47214 * 299.99215 * 9 8 7 38 38 H 0.96995 * 119.99747 * 359.97438 * 12 10 9 39 39 H 1.08997 * 109.46973 * 59.99744 * 15 13 12 40 40 H 1.09005 * 109.46867 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.47084 * 299.99870 * 15 13 12 42 42 H 1.09001 * 109.47415 * 294.99496 * 16 13 12 43 43 H 1.09003 * 109.46769 * 174.99791 * 16 13 12 44 44 H 1.09000 * 109.47498 * 273.88462 * 18 17 16 45 45 H 1.09008 * 109.47058 * 33.88603 * 18 17 16 46 46 H 1.09000 * 109.47092 * 153.88573 * 18 17 16 47 47 H 0.97000 * 120.00130 * 179.97438 * 22 21 19 48 48 H 1.07999 * 119.99655 * 179.72404 * 27 6 5 49 49 H 1.07992 * 120.00466 * 180.23134 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4314 1.2843 0.0005 5 6 4.0585 2.5151 0.0011 6 6 3.3030 3.6783 0.0016 7 8 3.9203 4.8900 0.0027 8 6 3.0803 6.0460 0.0037 9 6 3.9475 7.3065 0.0042 10 6 3.0617 8.5256 0.0047 11 8 1.8555 8.3988 0.0042 12 7 3.6098 9.7570 0.0056 13 6 2.7487 10.9421 0.0067 14 1 1.8540 10.7416 -0.5829 15 6 2.3473 11.2796 1.4440 16 6 3.5065 12.1236 -0.6021 17 7 3.9941 11.7570 -1.9341 18 6 5.3167 11.1460 -2.0873 19 6 3.2136 11.9855 -3.0357 20 1 2.1429 12.0787 -2.9292 21 6 3.7991 12.1031 -4.2889 22 7 3.0919 11.8576 -5.3714 23 14 5.5908 12.6097 -4.4387 24 1 6.4572 11.4114 -4.3020 25 1 5.8187 13.2366 -5.7655 26 1 5.9210 13.5841 -3.3677 27 6 1.9180 3.6056 0.0070 28 6 1.2909 2.3749 0.0011 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0196 0.3786 0.0005 33 1 5.1369 2.5717 0.0019 34 1 2.4511 6.0371 0.8937 35 1 2.4511 6.0387 -0.8863 36 1 4.5765 7.3151 -0.8860 37 1 4.5771 7.3141 0.8940 38 1 4.5745 9.8583 0.0064 39 1 3.2419 11.4801 2.0335 40 1 1.7069 12.1617 1.4447 41 1 1.8074 10.4379 1.8777 42 1 4.3518 12.3809 0.0362 43 1 2.8382 12.9809 -0.6831 44 1 6.0723 11.9283 -2.1595 45 1 5.5280 10.5155 -1.2235 46 1 5.3341 10.5394 -2.9928 47 1 3.5010 11.9401 -6.2470 48 1 1.3297 4.5113 0.0119 49 1 0.2124 2.3183 0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754333174.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:46 Heat of formation + Delta-G solvation = -57.979036 kcal Electronic energy + Delta-G solvation = -28597.234193 eV Core-core repulsion = 24526.380731 eV Total energy + Delta-G solvation = -4070.853461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.62089 -39.70979 -39.03207 -36.85163 -36.46482 -34.26730 -32.36153 -31.51058 -31.35696 -30.52155 -29.25300 -27.33266 -26.82770 -25.77721 -24.88708 -22.71545 -22.10323 -21.69568 -20.35579 -20.05989 -18.71237 -17.98730 -16.98846 -16.74357 -16.44599 -16.43956 -15.95853 -15.58667 -15.28145 -14.99512 -14.78394 -14.55936 -14.37812 -13.87019 -13.76785 -13.41597 -13.28288 -13.10255 -12.87429 -12.83669 -12.51554 -12.48298 -12.21390 -12.12320 -12.05681 -11.72338 -11.63592 -11.35150 -11.30057 -10.87176 -10.81658 -10.55388 -10.50906 -10.25948 -10.12078 -9.61964 -9.54038 -9.30537 -8.84069 -8.52170 -7.93268 -7.08051 -5.98510 -3.32386 1.03075 1.26369 2.80571 2.90712 3.05325 3.29922 3.46165 3.48262 3.52254 3.73571 4.48244 4.50693 4.57336 4.69183 4.81160 4.84389 4.85352 4.88679 4.94509 5.04341 5.14351 5.19019 5.24943 5.30914 5.36003 5.46282 5.58113 5.65215 5.66925 5.70828 5.73902 5.84382 5.90632 5.96673 6.07339 6.12107 6.12846 6.27399 6.33434 6.35118 6.44183 6.58969 6.69297 6.92313 7.05419 7.30437 7.80868 7.87776 8.27553 8.50693 8.89057 9.68541 9.98150 11.17283 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.002149 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.871571 B =13024.921333 C =13706.726555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.085 3.915 4 C -0.113 4.113 5 C -0.114 4.114 6 C 0.102 3.898 7 O -0.317 6.317 8 C 0.077 3.923 9 C -0.141 4.141 10 C 0.520 3.480 11 O -0.549 6.549 12 N -0.704 5.704 13 C 0.118 3.882 14 H 0.089 0.911 15 C -0.159 4.159 16 C 0.143 3.857 17 N -0.607 5.607 18 C 0.106 3.894 19 C -0.265 4.265 20 H 0.086 0.914 21 C 0.024 3.976 22 N -0.903 5.903 23 Si 0.887 3.113 24 H -0.288 1.288 25 H -0.305 1.305 26 H -0.279 1.279 27 C -0.167 4.167 28 C -0.166 4.166 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.396 0.604 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.009 0.991 45 H 0.026 0.974 46 H 0.061 0.939 47 H 0.263 0.737 48 H 0.135 0.865 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.417 -18.101 15.328 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.040 3.960 4 C -0.132 4.132 5 C -0.133 4.133 6 C 0.056 3.944 7 O -0.231 6.231 8 C 0.002 3.998 9 C -0.182 4.182 10 C 0.305 3.695 11 O -0.427 6.427 12 N -0.355 5.355 13 C 0.011 3.989 14 H 0.108 0.892 15 C -0.218 4.218 16 C 0.015 3.985 17 N -0.329 5.329 18 C -0.039 4.039 19 C -0.393 4.393 20 H 0.104 0.896 21 C -0.175 4.175 22 N -0.545 5.545 23 Si 0.718 3.282 24 H -0.215 1.215 25 H -0.234 1.234 26 H -0.205 1.205 27 C -0.186 4.186 28 C -0.185 4.185 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.232 0.768 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.026 0.974 45 H 0.045 0.955 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.153 0.847 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.170 -18.295 15.120 23.735 hybrid contribution 0.990 0.631 -0.319 1.217 sum 0.820 -17.664 14.801 23.060 Atomic orbital electron populations 1.23032 0.78562 1.03809 1.01363 1.86059 1.21200 1.26757 1.89404 1.18909 0.92333 0.84183 1.00555 1.20204 0.91302 0.97807 1.03840 1.20246 1.00276 0.88969 1.03775 1.18874 0.90957 0.85481 0.99048 1.85983 1.36147 1.12077 1.88942 1.22422 0.92364 0.82090 1.02939 1.21474 0.99305 0.91520 1.05852 1.20099 0.88678 0.84552 0.76154 1.90689 1.14996 1.86692 1.50360 1.46014 1.10338 1.05374 1.73782 1.21869 0.95553 0.85973 0.95492 0.89248 1.22126 1.01065 1.01616 0.96952 1.21115 0.96885 0.94155 0.86331 1.44084 1.16283 1.69874 1.02708 1.21448 0.87076 0.95540 0.99851 1.18863 0.91013 1.45170 0.84223 0.89602 1.25187 0.97388 0.99704 0.95206 1.69890 1.37170 1.49681 0.97767 0.87020 0.86704 0.78839 0.75684 1.21491 1.23354 1.20492 1.21191 0.93594 0.98734 1.05076 1.21054 1.00088 0.91653 1.05714 0.92664 0.88339 0.92758 0.84564 0.84392 0.91258 0.90913 0.87653 0.88141 0.76802 0.93032 0.91754 0.92759 0.93841 0.90976 0.97354 0.95547 0.92022 0.92744 0.84691 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.17 10.50 -19.69 -0.21 -3.38 16 3 C 0.08 0.90 6.69 -39.24 -0.26 0.64 16 4 C -0.11 -1.14 9.98 -39.45 -0.39 -1.53 16 5 C -0.11 -1.20 9.98 -39.45 -0.39 -1.60 16 6 C 0.10 1.23 6.69 -39.24 -0.26 0.96 16 7 O -0.32 -4.00 10.14 -19.68 -0.20 -4.20 16 8 C 0.08 0.96 4.03 37.16 0.15 1.11 16 9 C -0.14 -1.69 6.07 -27.88 -0.17 -1.86 16 10 C 0.52 8.08 7.79 -10.98 -0.09 8.00 16 11 O -0.55 -10.46 15.64 5.55 0.09 -10.37 16 12 N -0.70 -10.57 4.51 -53.80 -0.24 -10.81 16 13 C 0.12 1.93 2.88 -67.93 -0.20 1.74 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 15 C -0.16 -2.10 9.48 37.16 0.35 -1.74 16 16 C 0.14 2.52 5.32 -4.04 -0.02 2.50 16 17 N -0.61 -13.47 2.58 -181.11 -0.47 -13.94 16 18 C 0.11 2.14 8.00 59.85 0.48 2.62 16 19 C -0.26 -7.20 10.04 -15.06 -0.15 -7.35 16 20 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 21 C 0.02 0.69 5.17 -17.43 -0.09 0.60 16 22 N -0.90 -27.56 13.97 55.49 0.78 -26.78 16 23 Si 0.89 22.06 24.04 -169.99 -4.09 17.97 16 24 H -0.29 -6.81 6.38 56.52 0.36 -6.45 16 25 H -0.31 -7.80 7.11 56.52 0.40 -7.40 16 26 H -0.28 -6.84 6.90 56.52 0.39 -6.45 16 27 C -0.17 -1.92 9.03 -39.45 -0.36 -2.28 16 28 C -0.17 -1.73 9.03 -39.45 -0.36 -2.09 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.07 0.84 7.61 -51.93 -0.40 0.45 16 35 H 0.07 0.99 7.63 -51.93 -0.40 0.59 16 36 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.40 5.17 6.11 -40.82 -0.25 4.92 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 43 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16 44 H 0.01 0.18 5.74 -51.93 -0.30 -0.12 16 45 H 0.03 0.42 5.55 -51.92 -0.29 0.13 16 46 H 0.06 1.38 5.81 -51.93 -0.30 1.08 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 48 H 0.14 1.49 6.29 -52.49 -0.33 1.16 16 49 H 0.13 1.08 6.29 -52.49 -0.33 0.75 16 LS Contribution 393.13 15.07 5.92 5.92 Total: -1.00 -33.87 393.13 -6.79 -40.66 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.61 Total: 4.03 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -0.77 Total: 0.90 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.06 Total: -51.53 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.32 Total: -17.95 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.09 Total: 17.97 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.87 -6.79 -40.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754333174.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.322 kcal (2) G-P(sol) polarization free energy of solvation -33.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds