Wall clock time and date at job start Sat Apr 11 2020 04:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35985 * 116.99836 * 2 1 4 4 C 1.38695 * 120.00212 * 179.97438 * 3 2 1 5 5 C 1.38132 * 120.00115 * 180.02562 * 4 3 2 6 6 C 1.38699 * 120.00173 * 0.02562 * 5 4 3 7 7 O 1.35981 * 120.00230 * 179.97438 * 6 5 4 8 8 C 1.42896 * 116.99995 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46907 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47020 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99943 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99899 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99656 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.47139 * 324.99992 * 13 12 10 15 15 C 1.52999 * 109.47375 * 85.00160 * 13 12 10 16 16 C 1.53001 * 109.46705 * 205.00113 * 13 12 10 17 17 N 1.46503 * 109.47267 * 55.00210 * 16 13 12 18 18 C 1.46503 * 119.99571 * 269.99707 * 17 16 13 19 19 C 1.36929 * 120.00258 * 89.99797 * 17 16 13 20 20 H 1.08002 * 120.00397 * 337.18711 * 19 17 16 21 21 C 1.38816 * 120.00205 * 156.91102 * 19 17 16 22 22 N 1.31615 * 120.00337 * 156.32162 * 21 19 17 23 23 Si 1.86796 * 119.99527 * 336.32454 * 21 19 17 24 24 H 1.48500 * 109.47353 * 84.94216 * 23 21 19 25 25 H 1.48508 * 109.46996 * 204.94011 * 23 21 19 26 26 H 1.48503 * 109.47390 * 324.93596 * 23 21 19 27 27 C 1.38699 * 119.99484 * 0.25742 * 6 5 4 28 28 C 1.38131 * 120.00478 * 359.48656 * 27 6 5 29 29 H 1.08996 * 109.47329 * 60.00230 * 1 2 3 30 30 H 1.09000 * 109.46725 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47126 * 299.99675 * 1 2 3 32 32 H 1.08002 * 119.99738 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.99813 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47379 * 59.99998 * 8 7 6 35 35 H 1.09000 * 109.47087 * 299.99618 * 8 7 6 36 36 H 1.09000 * 109.47446 * 59.99618 * 9 8 7 37 37 H 1.09006 * 109.47214 * 299.99215 * 9 8 7 38 38 H 0.96995 * 119.99747 * 359.97438 * 12 10 9 39 39 H 1.08997 * 109.46973 * 59.99744 * 15 13 12 40 40 H 1.09005 * 109.46867 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.47084 * 299.99870 * 15 13 12 42 42 H 1.09001 * 109.47415 * 294.99496 * 16 13 12 43 43 H 1.09003 * 109.46769 * 174.99791 * 16 13 12 44 44 H 1.09000 * 109.47498 * 273.88462 * 18 17 16 45 45 H 1.09008 * 109.47058 * 33.88603 * 18 17 16 46 46 H 1.09000 * 109.47092 * 153.88573 * 18 17 16 47 47 H 0.97000 * 120.00130 * 179.97438 * 22 21 19 48 48 H 1.07999 * 119.99655 * 179.72404 * 27 6 5 49 49 H 1.07992 * 120.00466 * 180.23134 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4314 1.2843 0.0005 5 6 4.0585 2.5151 0.0011 6 6 3.3030 3.6783 0.0016 7 8 3.9203 4.8900 0.0027 8 6 3.0803 6.0460 0.0037 9 6 3.9475 7.3065 0.0042 10 6 3.0617 8.5256 0.0047 11 8 1.8555 8.3988 0.0042 12 7 3.6098 9.7570 0.0056 13 6 2.7487 10.9421 0.0067 14 1 1.8540 10.7416 -0.5829 15 6 2.3473 11.2796 1.4440 16 6 3.5065 12.1236 -0.6021 17 7 3.9941 11.7570 -1.9341 18 6 5.3167 11.1460 -2.0873 19 6 3.2136 11.9855 -3.0357 20 1 2.1429 12.0787 -2.9292 21 6 3.7991 12.1031 -4.2889 22 7 3.0919 11.8576 -5.3714 23 14 5.5908 12.6097 -4.4387 24 1 6.4572 11.4114 -4.3020 25 1 5.8187 13.2366 -5.7655 26 1 5.9210 13.5841 -3.3677 27 6 1.9180 3.6056 0.0070 28 6 1.2909 2.3749 0.0011 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0196 0.3786 0.0005 33 1 5.1369 2.5717 0.0019 34 1 2.4511 6.0371 0.8937 35 1 2.4511 6.0387 -0.8863 36 1 4.5765 7.3151 -0.8860 37 1 4.5771 7.3141 0.8940 38 1 4.5745 9.8583 0.0064 39 1 3.2419 11.4801 2.0335 40 1 1.7069 12.1617 1.4447 41 1 1.8074 10.4379 1.8777 42 1 4.3518 12.3809 0.0362 43 1 2.8382 12.9809 -0.6831 44 1 6.0723 11.9283 -2.1595 45 1 5.5280 10.5155 -1.2235 46 1 5.3341 10.5394 -2.9928 47 1 3.5010 11.9401 -6.2470 48 1 1.3297 4.5113 0.0119 49 1 0.2124 2.3183 0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754333174.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:45 Heat of formation + Delta-G solvation = -81.433523 kcal Electronic energy + Delta-G solvation = -28598.251255 eV Core-core repulsion = 24526.380731 eV Total energy + Delta-G solvation = -4071.870524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.46546 -40.89143 -39.92083 -38.32746 -37.35997 -35.85712 -33.65174 -33.27809 -32.22189 -31.70899 -30.05520 -28.29587 -27.95220 -27.62352 -25.92308 -23.83748 -23.24975 -22.75504 -21.76219 -21.31280 -19.56915 -18.93495 -18.82066 -17.77209 -17.46257 -17.42180 -17.20285 -16.85067 -16.61412 -16.18975 -15.84668 -15.76505 -15.37271 -15.16281 -14.75382 -14.67958 -14.55043 -14.31513 -14.16209 -14.10929 -13.74463 -13.62892 -13.60366 -13.11151 -13.01819 -12.88588 -12.79384 -12.50052 -12.39572 -12.22425 -12.15724 -12.07909 -11.84087 -11.66870 -11.53331 -11.36146 -10.92891 -10.71105 -10.10853 -9.99895 -8.95793 -8.76757 -8.15832 -5.45155 0.22519 0.42386 1.33315 1.44433 1.53338 1.65491 1.82869 2.38991 2.43848 2.63386 2.70069 3.05004 3.38907 3.59669 3.77533 3.80452 3.91456 3.95526 4.12405 4.13389 4.28245 4.32712 4.36768 4.38316 4.44382 4.47682 4.50269 4.56210 4.69629 4.70516 4.72673 4.73550 4.74618 4.85966 4.88890 4.99101 5.04479 5.05148 5.17869 5.26955 5.31184 5.37572 5.55450 5.64503 5.84566 6.12228 6.25847 6.47044 6.61578 6.92339 7.31018 7.65097 7.95882 9.04361 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.002149 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.871571 B =13024.921333 C =13706.726555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.079 3.921 4 C -0.116 4.116 5 C -0.114 4.114 6 C 0.078 3.922 7 O -0.320 6.320 8 C 0.082 3.918 9 C -0.130 4.130 10 C 0.514 3.486 11 O -0.591 6.591 12 N -0.698 5.698 13 C 0.125 3.875 14 H 0.039 0.961 15 C -0.146 4.146 16 C 0.141 3.859 17 N -0.619 5.619 18 C 0.100 3.900 19 C -0.249 4.249 20 H 0.044 0.956 21 C -0.041 4.041 22 N -0.959 5.959 23 Si 0.957 3.043 24 H -0.266 1.266 25 H -0.319 1.319 26 H -0.266 1.266 27 C -0.180 4.180 28 C -0.172 4.172 29 H 0.059 0.941 30 H 0.120 0.880 31 H 0.062 0.938 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.409 0.591 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.017 0.983 45 H 0.075 0.925 46 H 0.036 0.964 47 H 0.260 0.740 48 H 0.131 0.869 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.079 -18.893 17.678 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.034 3.966 4 C -0.135 4.135 5 C -0.132 4.132 6 C 0.033 3.967 7 O -0.235 6.235 8 C 0.006 3.994 9 C -0.170 4.170 10 C 0.301 3.699 11 O -0.473 6.473 12 N -0.350 5.350 13 C 0.018 3.982 14 H 0.058 0.942 15 C -0.205 4.205 16 C 0.015 3.985 17 N -0.342 5.342 18 C -0.044 4.044 19 C -0.378 4.378 20 H 0.062 0.938 21 C -0.235 4.235 22 N -0.605 5.605 23 Si 0.786 3.214 24 H -0.191 1.191 25 H -0.248 1.248 26 H -0.191 1.191 27 C -0.198 4.198 28 C -0.191 4.191 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.080 0.920 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.132 0.868 37 H 0.153 0.847 38 H 0.247 0.753 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.035 0.965 45 H 0.093 0.907 46 H 0.055 0.945 47 H 0.069 0.931 48 H 0.149 0.851 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.534 -19.094 17.535 26.048 hybrid contribution 0.011 0.776 -0.975 1.246 sum 2.545 -18.318 16.560 24.825 Atomic orbital electron populations 1.23305 0.76833 1.05537 1.01935 1.86047 1.23061 1.26342 1.89234 1.19122 0.92842 0.84532 1.00137 1.20504 0.91454 0.98420 1.03093 1.20491 1.01172 0.88548 1.03025 1.19149 0.91421 0.85703 1.00448 1.85947 1.36062 1.12180 1.89282 1.22289 0.92410 0.82687 1.01985 1.21418 0.98593 0.89118 1.07844 1.20728 0.88543 0.85558 0.75061 1.90677 1.17122 1.87293 1.52188 1.45939 1.10835 1.04896 1.73373 1.21591 0.93744 0.86083 0.96812 0.94245 1.22006 1.02380 1.01535 0.94593 1.21322 0.98245 0.94257 0.84670 1.44176 1.16674 1.70501 1.02895 1.21544 0.85807 0.96022 1.01020 1.18754 0.89964 1.43064 0.86053 0.93839 1.25882 1.02150 1.00662 0.94823 1.70044 1.39581 1.52577 0.98308 0.85888 0.81442 0.79057 0.75057 1.19132 1.24837 1.19122 1.21271 0.93728 0.99118 1.05722 1.21246 1.01080 0.91288 1.05478 0.92272 0.86135 0.91986 0.82568 0.82650 0.91344 0.92976 0.86782 0.84708 0.75267 0.90110 0.90888 0.93755 0.89616 0.91745 0.96495 0.90651 0.94492 0.93127 0.85148 0.83609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.15 10.50 -93.38 -0.98 -7.14 16 3 C 0.08 1.60 6.69 22.49 0.15 1.75 16 4 C -0.12 -2.18 9.98 22.35 0.22 -1.96 16 5 C -0.11 -2.27 9.98 22.35 0.22 -2.04 16 6 C 0.08 1.85 6.69 22.49 0.15 2.00 16 7 O -0.32 -7.83 10.14 -93.34 -0.95 -8.77 16 8 C 0.08 2.03 4.03 71.98 0.29 2.32 16 9 C -0.13 -2.87 6.07 29.85 0.18 -2.69 16 10 C 0.51 15.56 7.79 87.66 0.68 16.25 16 11 O -0.59 -23.12 15.64 -3.04 -0.05 -23.16 16 12 N -0.70 -19.55 4.51 -442.51 -2.00 -21.55 16 13 C 0.12 3.98 2.88 44.99 0.13 4.10 16 14 H 0.04 1.66 7.58 -2.38 -0.02 1.64 16 15 C -0.15 -3.56 9.48 71.98 0.68 -2.87 16 16 C 0.14 4.68 5.32 86.38 0.46 5.14 16 17 N -0.62 -26.66 2.58 -726.90 -1.88 -28.54 16 18 C 0.10 3.73 8.00 127.77 1.02 4.75 16 19 C -0.25 -13.83 10.04 84.04 0.84 -12.98 16 20 H 0.04 2.73 8.06 -2.91 -0.02 2.70 16 21 C -0.04 -2.37 5.17 84.86 0.44 -1.93 16 22 N -0.96 -60.87 13.97 21.65 0.30 -60.57 16 23 Si 0.96 45.49 24.04 68.60 1.65 47.14 16 24 H -0.27 -11.57 6.38 99.48 0.63 -10.94 16 25 H -0.32 -15.78 7.11 99.48 0.71 -15.08 16 26 H -0.27 -11.97 6.90 99.48 0.69 -11.28 16 27 C -0.18 -4.18 9.03 22.35 0.20 -3.98 16 28 C -0.17 -3.53 9.03 22.36 0.20 -3.32 16 29 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 30 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.59 7.66 -2.39 -0.02 0.58 16 32 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.07 1.68 7.61 -2.39 -0.02 1.66 16 35 H 0.05 1.48 7.63 -2.39 -0.02 1.47 16 36 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.13 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.41 9.05 6.11 -92.71 -0.57 8.49 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.09 2.20 8.07 -2.39 -0.02 2.18 16 43 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 44 H 0.02 0.63 5.74 -2.39 -0.01 0.61 16 45 H 0.08 2.03 5.55 -2.38 -0.01 2.02 16 46 H 0.04 1.56 5.81 -2.39 -0.01 1.54 16 47 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 48 H 0.13 3.05 6.29 -2.91 -0.02 3.03 16 49 H 0.15 2.35 6.29 -2.91 -0.02 2.33 16 Total: -1.00 -77.40 393.13 3.39 -74.01 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.30 Total: 22.74 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 6.99 Total: 5.85 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -3.57 Total: -110.66 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -1.97 Total: -39.07 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.65 Total: 47.14 kcal Total: -77.40 3.39 -74.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754333174.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.425 kcal (2) G-P(sol) polarization free energy of solvation -77.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds