Wall clock time and date at job start Sat Apr 11 2020 04:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47478 * 2 1 4 4 C 1.53009 * 109.46984 * 119.99992 * 2 1 3 5 5 C 1.50701 * 109.46778 * 295.00057 * 4 2 1 6 6 O 1.21284 * 120.00325 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99601 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99943 * 174.99481 * 7 5 4 9 9 H 1.08998 * 109.47239 * 326.50389 * 8 7 5 10 10 C 1.52995 * 109.47229 * 206.50489 * 8 7 5 11 11 N 1.46495 * 109.47478 * 54.99795 * 10 8 7 12 12 C 1.36937 * 120.00288 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99964 * 359.97438 * 12 11 10 14 14 C 1.38814 * 119.99855 * 180.02562 * 12 11 10 15 15 N 1.31628 * 119.99585 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00362 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47326 * 89.99777 * 16 14 12 18 18 H 1.48501 * 109.47300 * 210.00234 * 16 14 12 19 19 H 1.48502 * 109.46870 * 329.99670 * 16 14 12 20 20 C 1.52999 * 109.47246 * 86.50075 * 8 7 5 21 21 C 1.54261 * 110.03573 * 180.57556 * 20 8 7 22 22 C 1.54887 * 104.19774 * 217.10553 * 21 20 8 23 23 C 1.54891 * 102.74848 * 37.94534 * 22 21 20 24 24 C 1.53882 * 110.03014 * 63.41036 * 20 8 7 25 25 C 1.52998 * 109.47155 * 239.99504 * 2 1 3 26 26 F 1.39898 * 109.47438 * 300.00318 * 25 2 1 27 27 F 1.39902 * 109.46670 * 60.00612 * 25 2 1 28 28 F 1.39904 * 109.46965 * 179.97438 * 25 2 1 29 29 H 1.09000 * 109.47309 * 300.00200 * 1 2 3 30 30 H 1.09004 * 109.47146 * 59.99905 * 1 2 3 31 31 H 1.08999 * 109.47478 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47142 * 54.99968 * 4 2 1 33 33 H 1.09001 * 109.46611 * 175.00123 * 4 2 1 34 34 H 0.97001 * 120.00292 * 354.99397 * 7 5 4 35 35 H 1.09005 * 109.47417 * 175.00446 * 10 8 7 36 36 H 1.09003 * 109.47039 * 294.99929 * 10 8 7 37 37 H 0.97005 * 119.99989 * 0.02562 * 11 10 8 38 38 H 0.96998 * 119.99292 * 179.97438 * 15 14 12 39 39 H 1.08997 * 110.01633 * 302.02362 * 20 8 7 40 40 H 1.09004 * 110.48739 * 335.78780 * 21 20 8 41 41 H 1.08997 * 110.48569 * 98.42908 * 21 20 8 42 42 H 1.08989 * 110.75936 * 279.62766 * 22 21 20 43 43 H 1.09004 * 110.75651 * 156.25384 * 22 21 20 44 44 H 1.09004 * 110.48948 * 203.37883 * 23 22 21 45 45 H 1.08998 * 110.59880 * 80.78598 * 23 22 21 46 46 H 1.09000 * 110.03075 * 238.57354 * 24 20 8 47 47 H 1.09003 * 110.03004 * 359.95220 * 24 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0116 1.0875 2.3633 7 7 1.9852 -0.3914 3.7002 8 6 1.6944 0.4187 4.8857 9 1 1.7765 1.4757 4.6326 10 6 2.6947 0.0801 5.9927 11 7 4.0590 0.2528 5.4876 12 6 5.1286 0.0052 6.3060 13 1 4.9664 -0.3169 7.3241 14 6 6.4213 0.1693 5.8275 15 7 7.4494 -0.0682 6.6144 16 14 6.7018 0.7285 4.0675 17 1 6.7628 2.2115 4.0230 18 1 7.9814 0.1651 3.5671 19 1 5.5841 0.2532 3.2130 20 6 0.2749 0.1196 5.3721 21 6 -0.0504 0.9770 6.6125 22 6 -0.8991 0.0416 7.5090 23 6 -0.2188 -1.3352 7.3069 24 6 0.1678 -1.3506 5.8136 25 6 2.0400 -0.7213 -1.2492 26 9 1.5736 -2.0403 -1.2491 27 9 1.5737 -0.0618 -2.3914 28 9 3.4390 -0.7208 -1.2494 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 2.4253 -1.2505 3.7959 35 1 2.5350 0.7441 6.8423 36 1 2.5520 -0.9536 6.3077 37 1 4.2047 0.5424 4.5733 38 1 8.3526 0.0462 6.2799 39 1 -0.4426 0.3240 4.5774 40 1 0.8661 1.2689 7.1255 41 1 -0.6260 1.8576 6.3273 42 1 -1.9341 0.0147 7.1685 43 1 -0.8425 0.3508 8.5527 44 1 -0.9173 -2.1421 7.5285 45 1 0.6702 -1.4191 7.9320 46 1 -0.6022 -1.8594 5.2337 47 1 1.1269 -1.8512 5.6805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754650531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:50 Heat of formation + Delta-G solvation = -202.776213 kcal Electronic energy + Delta-G solvation = -30898.809624 eV Core-core repulsion = 26279.820546 eV Total energy + Delta-G solvation = -4618.989078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.30082 -47.77880 -47.76150 -40.26956 -38.55352 -35.67988 -35.00469 -33.72929 -31.49965 -30.20270 -28.68101 -28.04294 -26.60517 -26.37463 -23.30598 -22.03069 -21.56531 -20.77099 -20.22021 -18.98305 -18.80269 -18.53279 -17.78034 -17.66025 -16.55170 -16.01214 -15.97370 -15.54753 -15.13961 -14.73905 -14.57159 -14.43704 -14.20026 -14.11737 -13.94516 -13.91163 -13.87915 -13.62304 -13.38143 -13.18512 -12.99930 -12.74463 -12.49049 -12.23225 -11.80844 -11.65461 -11.57670 -11.51323 -11.30481 -11.06563 -11.02501 -11.00135 -10.94650 -10.66901 -10.48052 -10.34609 -10.06965 -9.74533 -9.66751 -8.97877 -8.85718 -7.31272 -5.83850 -3.20223 2.50037 2.61342 3.16020 3.29891 3.35235 3.41091 3.62622 3.84379 3.85994 4.43190 4.52332 4.61321 4.64102 4.67156 4.74314 4.86008 5.00429 5.21067 5.23801 5.28854 5.32256 5.42975 5.49900 5.53725 5.54067 5.66457 5.67968 5.70645 5.72604 5.84081 5.89459 5.95970 6.00663 6.06220 6.16051 6.20238 6.33220 6.41796 6.44203 6.60919 6.77080 7.58332 7.91144 8.24238 8.34808 9.13162 9.85361 10.04366 11.34271 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.008004 B = 0.004558 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.373358 B = 6141.645285 C = 8993.124752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 H 0.123 0.877 4 C -0.149 4.149 5 C 0.521 3.479 6 O -0.542 6.542 7 N -0.711 5.711 8 C 0.140 3.860 9 H 0.088 0.912 10 C 0.147 3.853 11 N -0.755 5.755 12 C -0.247 4.247 13 H 0.091 0.909 14 C 0.008 3.992 15 N -0.931 5.931 16 Si 0.883 3.117 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.279 1.279 20 C -0.095 4.095 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.121 4.121 25 C 0.452 3.548 26 F -0.183 7.183 27 F -0.183 7.183 28 F -0.182 7.182 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.405 0.595 35 H 0.044 0.956 36 H 0.038 0.962 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.915 -2.956 -10.205 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.137 4.137 3 H 0.141 0.859 4 C -0.189 4.189 5 C 0.307 3.693 6 O -0.420 6.420 7 N -0.361 5.361 8 C 0.036 3.964 9 H 0.106 0.894 10 C 0.019 3.981 11 N -0.401 5.401 12 C -0.376 4.376 13 H 0.109 0.891 14 C -0.189 4.189 15 N -0.579 5.579 16 Si 0.714 3.286 17 H -0.211 1.211 18 H -0.217 1.217 19 H -0.205 1.205 20 C -0.116 4.116 21 C -0.162 4.162 22 C -0.160 4.160 23 C -0.162 4.162 24 C -0.158 4.158 25 C 0.398 3.602 26 F -0.165 7.165 27 F -0.164 7.164 28 F -0.164 7.164 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.240 0.760 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.194 0.806 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.182 -2.297 -10.102 20.926 hybrid contribution 0.839 -0.187 -1.490 1.720 sum -17.342 -2.484 -11.592 21.007 Atomic orbital electron populations 1.21993 0.90940 1.03280 1.05177 1.22159 1.00256 1.01768 0.89480 0.85919 1.21745 1.04351 1.00768 0.91998 1.20122 0.79136 0.85586 0.84464 1.90661 1.39900 1.24821 1.86637 1.46007 1.60733 1.23623 1.05736 1.21348 0.94113 0.96098 0.84870 0.89436 1.21081 0.83789 0.99368 0.93832 1.42706 1.01183 1.83483 1.12736 1.19024 0.84146 1.38740 0.95721 0.89149 1.24661 0.95398 1.01405 0.97388 1.69700 0.97889 1.55086 1.35216 0.86586 0.77147 0.78816 0.86081 1.21102 1.21661 1.20515 1.22079 0.96338 0.95320 0.97824 1.22509 1.00537 0.97649 0.95469 1.22455 0.98698 0.95347 0.99489 1.22363 1.00340 0.96940 0.96574 1.22235 1.01566 0.96160 0.95845 1.20669 0.75524 0.77690 0.86287 1.93164 1.88449 1.38014 1.96831 1.93172 1.88494 1.80756 1.54006 1.93204 1.29989 1.96400 1.96789 0.88260 0.91532 0.91875 0.87559 0.87401 0.75986 0.93792 0.94422 0.80559 0.92988 0.90778 0.90309 0.91872 0.92011 0.91718 0.92231 0.91203 0.92545 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 8.69 37.16 0.32 -1.16 16 2 C -0.12 -1.20 2.01 -90.62 -0.18 -1.38 16 3 H 0.12 1.32 7.95 -51.93 -0.41 0.91 16 4 C -0.15 -1.56 4.94 -27.88 -0.14 -1.70 16 5 C 0.52 6.85 7.52 -10.98 -0.08 6.77 16 6 O -0.54 -8.35 13.66 5.55 0.08 -8.28 16 7 N -0.71 -9.47 4.05 -53.81 -0.22 -9.69 16 8 C 0.14 2.03 1.86 -67.93 -0.13 1.90 16 9 H 0.09 1.44 7.61 -51.93 -0.39 1.04 16 10 C 0.15 2.54 5.27 -4.05 -0.02 2.51 16 11 N -0.75 -16.70 5.24 -59.91 -0.31 -17.01 16 12 C -0.25 -6.66 10.47 -15.06 -0.16 -6.82 16 13 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 14 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 15 N -0.93 -28.59 13.97 55.49 0.78 -27.81 16 16 Si 0.88 21.71 27.74 -169.99 -4.71 16.99 16 17 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 20 C -0.10 -1.16 2.96 -89.50 -0.26 -1.42 16 21 C -0.12 -1.42 6.18 -25.08 -0.16 -1.58 16 22 C -0.12 -1.24 6.91 -24.74 -0.17 -1.41 16 23 C -0.12 -1.31 6.83 -25.07 -0.17 -1.48 16 24 C -0.12 -1.33 5.62 -25.61 -0.14 -1.48 16 25 C 0.45 4.83 2.69 37.16 0.10 4.93 16 26 F -0.18 -1.95 16.37 2.25 0.04 -1.91 16 27 F -0.18 -2.02 16.80 2.25 0.04 -1.98 16 28 F -0.18 -2.19 16.71 2.25 0.04 -2.15 16 29 H 0.10 1.09 5.95 -51.93 -0.31 0.78 16 30 H 0.07 0.58 7.80 -51.93 -0.41 0.17 16 31 H 0.06 0.53 7.80 -51.93 -0.41 0.13 16 32 H 0.11 0.90 7.94 -51.93 -0.41 0.48 16 33 H 0.11 1.15 7.66 -51.93 -0.40 0.76 16 34 H 0.41 5.05 8.54 -40.82 -0.35 4.70 16 35 H 0.04 0.79 6.30 -51.93 -0.33 0.46 16 36 H 0.04 0.64 6.12 -51.93 -0.32 0.33 16 37 H 0.36 7.99 5.20 -40.82 -0.21 7.78 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.99 5.85 -51.93 -0.30 0.69 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.84 5.85 -51.93 -0.30 0.54 16 LS Contribution 376.65 15.07 5.68 5.68 Total: -1.00 -30.77 376.65 -7.00 -37.77 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -7.10 Total: 10.57 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.29 Total: -2.18 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.24 Total: -54.51 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.08 Total: -8.28 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.11 Total: -6.04 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.77 -7.00 -37.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754650531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.006 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds