Wall clock time and date at job start Sat Apr 11 2020 04:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47478 * 2 1 4 4 C 1.53009 * 109.46984 * 119.99992 * 2 1 3 5 5 C 1.50701 * 109.46778 * 295.00057 * 4 2 1 6 6 O 1.21284 * 120.00325 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99601 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99943 * 174.99481 * 7 5 4 9 9 H 1.08998 * 109.47239 * 326.50389 * 8 7 5 10 10 C 1.52995 * 109.47229 * 206.50489 * 8 7 5 11 11 N 1.46495 * 109.47478 * 54.99795 * 10 8 7 12 12 C 1.36937 * 120.00288 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99964 * 359.97438 * 12 11 10 14 14 C 1.38814 * 119.99855 * 180.02562 * 12 11 10 15 15 N 1.31628 * 119.99585 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00362 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47326 * 89.99777 * 16 14 12 18 18 H 1.48501 * 109.47300 * 210.00234 * 16 14 12 19 19 H 1.48502 * 109.46870 * 329.99670 * 16 14 12 20 20 C 1.52999 * 109.47246 * 86.50075 * 8 7 5 21 21 C 1.54261 * 110.03573 * 180.57556 * 20 8 7 22 22 C 1.54887 * 104.19774 * 217.10553 * 21 20 8 23 23 C 1.54891 * 102.74848 * 37.94534 * 22 21 20 24 24 C 1.53882 * 110.03014 * 63.41036 * 20 8 7 25 25 C 1.52998 * 109.47155 * 239.99504 * 2 1 3 26 26 F 1.39898 * 109.47438 * 300.00318 * 25 2 1 27 27 F 1.39902 * 109.46670 * 60.00612 * 25 2 1 28 28 F 1.39904 * 109.46965 * 179.97438 * 25 2 1 29 29 H 1.09000 * 109.47309 * 300.00200 * 1 2 3 30 30 H 1.09004 * 109.47146 * 59.99905 * 1 2 3 31 31 H 1.08999 * 109.47478 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47142 * 54.99968 * 4 2 1 33 33 H 1.09001 * 109.46611 * 175.00123 * 4 2 1 34 34 H 0.97001 * 120.00292 * 354.99397 * 7 5 4 35 35 H 1.09005 * 109.47417 * 175.00446 * 10 8 7 36 36 H 1.09003 * 109.47039 * 294.99929 * 10 8 7 37 37 H 0.97005 * 119.99989 * 0.02562 * 11 10 8 38 38 H 0.96998 * 119.99292 * 179.97438 * 15 14 12 39 39 H 1.08997 * 110.01633 * 302.02362 * 20 8 7 40 40 H 1.09004 * 110.48739 * 335.78780 * 21 20 8 41 41 H 1.08997 * 110.48569 * 98.42908 * 21 20 8 42 42 H 1.08989 * 110.75936 * 279.62766 * 22 21 20 43 43 H 1.09004 * 110.75651 * 156.25384 * 22 21 20 44 44 H 1.09004 * 110.48948 * 203.37883 * 23 22 21 45 45 H 1.08998 * 110.59880 * 80.78598 * 23 22 21 46 46 H 1.09000 * 110.03075 * 238.57354 * 24 20 8 47 47 H 1.09003 * 110.03004 * 359.95220 * 24 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0116 1.0875 2.3633 7 7 1.9852 -0.3914 3.7002 8 6 1.6944 0.4187 4.8857 9 1 1.7765 1.4757 4.6326 10 6 2.6947 0.0801 5.9927 11 7 4.0590 0.2528 5.4876 12 6 5.1286 0.0052 6.3060 13 1 4.9664 -0.3169 7.3241 14 6 6.4213 0.1693 5.8275 15 7 7.4494 -0.0682 6.6144 16 14 6.7018 0.7285 4.0675 17 1 6.7628 2.2115 4.0230 18 1 7.9814 0.1651 3.5671 19 1 5.5841 0.2532 3.2130 20 6 0.2749 0.1196 5.3721 21 6 -0.0504 0.9770 6.6125 22 6 -0.8991 0.0416 7.5090 23 6 -0.2188 -1.3352 7.3069 24 6 0.1678 -1.3506 5.8136 25 6 2.0400 -0.7213 -1.2492 26 9 1.5736 -2.0403 -1.2491 27 9 1.5737 -0.0618 -2.3914 28 9 3.4390 -0.7208 -1.2494 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 2.4253 -1.2505 3.7959 35 1 2.5350 0.7441 6.8423 36 1 2.5520 -0.9536 6.3077 37 1 4.2047 0.5424 4.5733 38 1 8.3526 0.0462 6.2799 39 1 -0.4426 0.3240 4.5774 40 1 0.8661 1.2689 7.1255 41 1 -0.6260 1.8576 6.3273 42 1 -1.9341 0.0147 7.1685 43 1 -0.8425 0.3508 8.5527 44 1 -0.9173 -2.1421 7.5285 45 1 0.6702 -1.4191 7.9320 46 1 -0.6022 -1.8594 5.2337 47 1 1.1269 -1.8512 5.6805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754650531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:49 Heat of formation + Delta-G solvation = -220.827819 kcal Electronic energy + Delta-G solvation = -30899.592401 eV Core-core repulsion = 26279.820546 eV Total energy + Delta-G solvation = -4619.771855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -51.15095 -48.64115 -48.60714 -41.34363 -39.56625 -36.93974 -36.06813 -35.20831 -33.33206 -31.47386 -29.57009 -28.89549 -28.00112 -27.27840 -24.80809 -23.45446 -22.62789 -21.66930 -21.19490 -20.25307 -19.69701 -19.46451 -19.30799 -18.63730 -17.66348 -17.13061 -17.07107 -16.50978 -16.36147 -16.03282 -15.60038 -15.47653 -15.41452 -15.06478 -15.01109 -14.83637 -14.79258 -14.74976 -14.59782 -14.46906 -14.12787 -14.02128 -13.62883 -13.37673 -13.24505 -12.87575 -12.73157 -12.46645 -12.39854 -12.29588 -12.13633 -12.12306 -11.90780 -11.85665 -11.83678 -11.67586 -11.36153 -11.24916 -10.98691 -10.78272 -9.98240 -9.28928 -8.03044 -5.36089 1.34089 1.38504 1.45031 1.58835 1.64304 2.17429 2.46221 2.78528 2.98345 3.03412 3.29666 3.48087 3.58165 3.72751 3.78165 3.82639 3.88877 4.01661 4.11993 4.21658 4.36404 4.47927 4.51039 4.52115 4.61551 4.73468 4.74596 4.80305 4.87071 4.91672 4.92184 4.94324 5.09401 5.14314 5.19064 5.23559 5.31437 5.38115 5.51526 5.57231 5.62382 5.76866 6.20319 6.53787 7.07148 7.20981 7.82408 8.00772 9.18262 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.008004 B = 0.004558 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.373358 B = 6141.645285 C = 8993.124752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 H 0.116 0.884 4 C -0.145 4.145 5 C 0.521 3.479 6 O -0.565 6.565 7 N -0.711 5.711 8 C 0.152 3.848 9 H 0.068 0.932 10 C 0.148 3.852 11 N -0.755 5.755 12 C -0.228 4.228 13 H 0.061 0.939 14 C -0.058 4.058 15 N -0.981 5.981 16 Si 0.945 3.055 17 H -0.288 1.288 18 H -0.296 1.296 19 H -0.248 1.248 20 C -0.086 4.086 21 C -0.127 4.127 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.117 4.117 25 C 0.457 3.543 26 F -0.181 7.181 27 F -0.185 7.185 28 F -0.190 7.190 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.110 0.890 34 H 0.411 0.589 35 H 0.040 0.960 36 H 0.047 0.953 37 H 0.364 0.636 38 H 0.257 0.743 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.893 -3.603 -11.738 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.134 4.134 3 H 0.134 0.866 4 C -0.184 4.184 5 C 0.308 3.692 6 O -0.445 6.445 7 N -0.362 5.362 8 C 0.047 3.953 9 H 0.086 0.914 10 C 0.022 3.978 11 N -0.401 5.401 12 C -0.359 4.359 13 H 0.079 0.921 14 C -0.250 4.250 15 N -0.632 5.632 16 Si 0.773 3.227 17 H -0.215 1.215 18 H -0.223 1.223 19 H -0.172 1.172 20 C -0.106 4.106 21 C -0.165 4.165 22 C -0.155 4.155 23 C -0.163 4.163 24 C -0.154 4.154 25 C 0.403 3.597 26 F -0.162 7.162 27 F -0.167 7.167 28 F -0.172 7.172 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.149 0.851 33 H 0.128 0.872 34 H 0.247 0.753 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.197 0.803 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.218 -2.958 -11.648 23.520 hybrid contribution 1.378 0.018 -0.929 1.662 sum -18.840 -2.940 -12.577 22.843 Atomic orbital electron populations 1.21938 0.90232 1.03952 1.04742 1.22128 1.00791 1.01319 0.89167 0.86602 1.21765 1.04610 1.01539 0.90523 1.20524 0.78478 0.85348 0.84866 1.90660 1.40946 1.25945 1.86954 1.45990 1.60925 1.23692 1.05578 1.21094 0.94594 0.95207 0.84425 0.91366 1.21195 0.82110 0.99667 0.94816 1.42682 1.01901 1.83230 1.12308 1.19004 0.85504 1.36421 0.94979 0.92089 1.25392 0.95227 1.02697 1.01645 1.69870 0.98264 1.57597 1.37451 0.85560 0.77641 0.77850 0.81615 1.21514 1.22272 1.17199 1.21990 0.94387 0.96346 0.97915 1.22520 1.00300 0.98218 0.95424 1.22445 0.98999 0.94506 0.99518 1.22368 1.00245 0.97780 0.95864 1.22207 1.01646 0.95152 0.96443 1.20653 0.75091 0.77713 0.86261 1.93169 1.88364 1.37890 1.96823 1.93169 1.88471 1.80830 1.54181 1.93190 1.30713 1.96442 1.96821 0.89680 0.90925 0.90650 0.85077 0.87176 0.75319 0.94190 0.93518 0.80276 0.93413 0.90898 0.91799 0.91360 0.90697 0.91199 0.90662 0.92516 0.91148 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.69 71.98 0.63 -1.91 16 2 C -0.11 -2.10 2.01 -10.79 -0.02 -2.12 16 3 H 0.12 2.32 7.95 -2.39 -0.02 2.30 16 4 C -0.14 -2.66 4.94 29.85 0.15 -2.51 16 5 C 0.52 12.64 7.52 87.66 0.66 13.30 16 6 O -0.57 -16.61 13.66 -3.04 -0.04 -16.65 16 7 N -0.71 -17.59 4.05 -442.54 -1.79 -19.38 16 8 C 0.15 4.21 1.86 44.99 0.08 4.30 16 9 H 0.07 2.19 7.61 -2.39 -0.02 2.18 16 10 C 0.15 5.02 5.27 86.38 0.46 5.48 16 11 N -0.76 -32.80 5.24 -343.46 -1.80 -34.60 16 12 C -0.23 -12.41 10.47 84.03 0.88 -11.53 16 13 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 14 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16 15 N -0.98 -61.59 13.97 21.65 0.30 -61.29 16 16 Si 0.95 44.58 27.74 68.60 1.90 46.49 16 17 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 18 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 19 H -0.25 -10.24 6.52 99.48 0.65 -9.59 16 20 C -0.09 -1.95 2.96 -10.07 -0.03 -1.98 16 21 C -0.13 -2.74 6.18 31.67 0.20 -2.55 16 22 C -0.12 -2.12 6.91 31.88 0.22 -1.90 16 23 C -0.13 -2.37 6.83 31.67 0.22 -2.15 16 24 C -0.12 -2.33 5.62 31.32 0.18 -2.15 16 25 C 0.46 8.75 2.69 71.98 0.19 8.94 16 26 F -0.18 -3.38 16.37 44.97 0.74 -2.64 16 27 F -0.19 -3.73 16.80 44.97 0.76 -2.98 16 28 F -0.19 -4.17 16.71 44.97 0.75 -3.42 16 29 H 0.08 1.72 5.95 -2.39 -0.01 1.71 16 30 H 0.07 1.11 7.80 -2.38 -0.02 1.09 16 31 H 0.07 1.06 7.80 -2.39 -0.02 1.04 16 32 H 0.13 1.76 7.94 -2.39 -0.02 1.74 16 33 H 0.11 2.04 7.66 -2.39 -0.02 2.02 16 34 H 0.41 9.30 8.54 -92.71 -0.79 8.51 16 35 H 0.04 1.43 6.30 -2.38 -0.02 1.41 16 36 H 0.05 1.54 6.12 -2.39 -0.01 1.53 16 37 H 0.36 15.46 5.20 -92.70 -0.48 14.98 16 38 H 0.26 15.47 8.31 -92.71 -0.77 14.69 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 1.57 5.85 -2.39 -0.01 1.56 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 45 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.06 1.37 5.85 -2.39 -0.01 1.36 16 Total: -1.00 -66.21 376.65 4.76 -61.45 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -0.32 Total: 32.66 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 4.27 Total: 0.37 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -3.29 Total: -115.27 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.04 Total: -16.65 kcal Atomic # 9 Polarization: -11.28 SS G_CDS: 2.24 Total: -9.04 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.49 kcal Total: -66.21 4.76 -61.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754650531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.379 kcal (2) G-P(sol) polarization free energy of solvation -66.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds