Wall clock time and date at job start Sat Apr 11 2020 04:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46955 * 2 1 4 4 C 1.53003 * 109.47349 * 120.00048 * 2 1 3 5 5 C 1.50706 * 109.46951 * 294.99876 * 4 2 1 6 6 O 1.21283 * 119.99824 * 0.02562 * 5 4 2 7 7 N 1.34769 * 119.99755 * 179.97438 * 5 4 2 8 8 C 1.46498 * 120.00029 * 174.89631 * 7 5 4 9 9 H 1.09003 * 109.47122 * 38.30495 * 8 7 5 10 10 C 1.52997 * 109.47611 * 158.30313 * 8 7 5 11 11 N 1.46503 * 109.47173 * 302.16935 * 10 8 7 12 12 C 1.36939 * 119.99932 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99873 * 0.02562 * 12 11 10 14 14 C 1.38804 * 119.99860 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00247 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00099 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47215 * 89.99634 * 16 14 12 18 18 H 1.48507 * 109.47221 * 209.99720 * 16 14 12 19 19 H 1.48499 * 109.47007 * 329.99779 * 16 14 12 20 20 C 1.52998 * 109.47174 * 278.30815 * 8 7 5 21 21 C 1.54277 * 110.02909 * 299.42938 * 20 8 7 22 22 C 1.54891 * 104.19355 * 217.10188 * 21 20 8 23 23 C 1.54892 * 102.74969 * 37.94825 * 22 21 20 24 24 C 1.53873 * 110.03663 * 182.26868 * 20 8 7 25 25 C 1.52999 * 109.47039 * 240.00191 * 2 1 3 26 26 F 1.39896 * 109.47026 * 299.99401 * 25 2 1 27 27 F 1.39895 * 109.47514 * 60.00196 * 25 2 1 28 28 F 1.39907 * 109.46941 * 179.97438 * 25 2 1 29 29 H 1.09000 * 109.46607 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47210 * 299.99964 * 1 2 3 31 31 H 1.08995 * 109.47210 * 60.00130 * 1 2 3 32 32 H 1.08994 * 109.47133 * 55.00119 * 4 2 1 33 33 H 1.09000 * 109.47100 * 175.00367 * 4 2 1 34 34 H 0.96999 * 120.00291 * 354.89533 * 7 5 4 35 35 H 1.09000 * 109.46926 * 62.16616 * 10 8 7 36 36 H 1.08997 * 109.47504 * 182.16645 * 10 8 7 37 37 H 0.96997 * 119.99524 * 359.97438 * 11 10 8 38 38 H 0.97000 * 120.00245 * 180.02562 * 15 14 12 39 39 H 1.09001 * 110.02062 * 60.87250 * 20 8 7 40 40 H 1.09001 * 110.48557 * 335.78406 * 21 20 8 41 41 H 1.08996 * 110.48171 * 98.42758 * 21 20 8 42 42 H 1.08995 * 110.76185 * 279.62655 * 22 21 20 43 43 H 1.08999 * 110.91235 * 156.32680 * 22 21 20 44 44 H 1.09000 * 110.48721 * 203.37630 * 23 22 21 45 45 H 1.08995 * 110.60425 * 80.78460 * 23 22 21 46 46 H 1.08999 * 110.02980 * 238.57183 * 24 20 8 47 47 H 1.09006 * 110.02963 * 359.97438 * 24 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0571 2.4766 6 8 1.0110 1.0870 2.3633 7 7 1.9846 -0.3919 3.7001 8 6 1.6958 0.4191 4.8855 9 1 0.7274 0.9050 4.7662 10 6 1.6664 -0.4795 6.1235 11 7 0.6610 -1.5293 5.9411 12 6 0.4551 -2.4586 6.9257 13 1 1.0336 -2.4172 7.8367 14 6 -0.4979 -3.4529 6.7531 15 7 -0.6962 -4.3458 7.6996 16 14 -1.4989 -3.5240 5.1776 17 1 -0.7950 -4.3712 4.1816 18 1 -2.8349 -4.1050 5.4658 19 1 -1.6628 -2.1522 4.6330 20 6 2.7828 1.4827 5.0530 21 6 4.1581 0.8083 5.2372 22 6 4.8869 1.7070 6.2669 23 6 3.7493 2.1033 7.2404 24 6 2.5230 2.3060 6.3267 25 6 2.0400 -0.7212 -1.2493 26 9 1.5737 -2.0402 -1.2492 27 9 1.5737 -0.0617 -2.3915 28 9 3.4390 -0.7207 -1.2495 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6055 -1.7198 1.2951 33 1 3.1264 -0.7994 1.2056 34 1 2.4227 -1.2519 3.7959 35 1 2.6463 -0.9355 6.2648 36 1 1.4137 0.1174 6.9998 37 1 0.1412 -1.5662 5.1230 38 1 -1.3619 -5.0409 7.5789 39 1 2.8011 2.1379 4.1821 40 1 4.0382 -0.2016 5.6295 41 1 4.7033 0.7898 4.2936 42 1 5.3053 2.5890 5.7821 43 1 5.6647 1.1492 6.7885 44 1 3.9961 3.0299 7.7587 45 1 3.5625 1.3042 7.9578 46 1 2.4159 3.3609 6.0740 47 1 1.6222 1.9481 6.8253 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754650532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:53 Heat of formation + Delta-G solvation = -203.150561 kcal Electronic energy + Delta-G solvation = -30864.725890 eV Core-core repulsion = 26245.720579 eV Total energy + Delta-G solvation = -4619.005311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.32673 -47.81287 -47.77989 -40.27223 -38.54916 -35.67562 -35.00538 -33.74630 -31.51512 -30.19463 -28.67802 -28.05665 -26.58905 -26.38017 -23.31029 -21.99048 -21.68370 -20.67543 -20.24577 -19.01517 -18.81781 -18.56625 -17.79585 -17.66001 -16.47918 -16.26488 -15.85473 -15.44155 -15.14136 -14.73754 -14.56564 -14.44319 -14.23093 -14.10180 -13.99771 -13.95720 -13.89295 -13.64278 -13.44872 -13.25755 -12.95459 -12.73929 -12.48337 -12.19852 -11.78596 -11.61462 -11.60431 -11.49400 -11.22652 -11.12888 -11.03678 -10.99457 -10.93252 -10.79014 -10.47535 -10.31438 -10.03088 -9.77616 -9.66890 -8.97731 -8.85061 -7.31617 -5.84065 -3.20565 2.47610 2.61245 3.14492 3.30860 3.35163 3.40425 3.61131 3.82723 3.83746 4.42285 4.52221 4.59040 4.63886 4.66069 4.73454 4.85467 5.00920 5.20839 5.23963 5.29085 5.30722 5.41468 5.49554 5.54274 5.56974 5.68055 5.68907 5.69471 5.75240 5.83034 5.87259 5.97329 6.03982 6.07914 6.15463 6.20545 6.37060 6.39776 6.41633 6.62872 6.76877 7.58214 7.90837 8.24214 8.34509 9.12905 9.85097 10.04062 11.34033 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.008187 B = 0.004365 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3419.308749 B = 6412.545170 C = 9030.607127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.115 4.115 3 H 0.122 0.878 4 C -0.148 4.148 5 C 0.520 3.480 6 O -0.541 6.541 7 N -0.711 5.711 8 C 0.140 3.860 9 H 0.087 0.913 10 C 0.147 3.853 11 N -0.755 5.755 12 C -0.247 4.247 13 H 0.091 0.909 14 C 0.008 3.992 15 N -0.931 5.931 16 Si 0.880 3.120 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.277 1.277 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.121 4.121 25 C 0.452 3.548 26 F -0.181 7.181 27 F -0.183 7.183 28 F -0.185 7.185 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.406 0.594 35 H 0.038 0.962 36 H 0.045 0.955 37 H 0.362 0.638 38 H 0.260 0.740 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.990 11.643 -13.910 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.135 4.135 3 H 0.140 0.860 4 C -0.188 4.188 5 C 0.306 3.694 6 O -0.420 6.420 7 N -0.362 5.362 8 C 0.036 3.964 9 H 0.105 0.895 10 C 0.020 3.980 11 N -0.401 5.401 12 C -0.377 4.377 13 H 0.109 0.891 14 C -0.188 4.188 15 N -0.579 5.579 16 Si 0.711 3.289 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.204 1.204 20 C -0.116 4.116 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.159 4.159 25 C 0.398 3.602 26 F -0.163 7.163 27 F -0.164 7.164 28 F -0.166 7.166 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.241 0.759 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.195 0.805 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.571 12.232 -13.783 20.765 hybrid contribution -0.469 -0.786 -1.295 1.586 sum 9.101 11.446 -15.078 21.005 Atomic orbital electron populations 1.22027 0.90875 1.03627 1.05249 1.22145 1.00396 1.01505 0.89419 0.86009 1.21746 1.03927 1.01146 0.92022 1.20126 0.79163 0.85608 0.84501 1.90666 1.39573 1.25120 1.86598 1.46010 1.61248 1.23203 1.05717 1.21368 0.98574 0.91734 0.84761 0.89498 1.21069 0.93400 0.89675 0.93863 1.42721 1.44347 1.32849 1.20220 1.19025 1.17422 1.03804 0.97410 0.89136 1.24654 0.99123 0.97617 0.97409 1.69695 1.37128 1.18000 1.33068 0.86613 0.80493 0.77456 0.84365 1.21020 1.21634 1.20358 1.22076 0.94726 0.96326 0.98499 1.22518 0.94879 0.99935 0.98692 1.22464 0.97492 0.99161 0.96980 1.22352 0.94837 1.01181 0.97761 1.22214 0.99065 0.99407 0.95228 1.20680 0.75332 0.77828 0.86323 1.93184 1.88407 1.37867 1.96813 1.93172 1.88481 1.80765 1.53995 1.93178 1.30208 1.96443 1.96820 0.91688 0.88163 0.91468 0.87414 0.87576 0.75927 0.94428 0.93727 0.80529 0.92981 0.90888 0.90375 0.92343 0.92080 0.91809 0.92128 0.91183 0.92115 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.69 37.16 0.32 -1.38 16 2 C -0.11 -1.14 2.01 -90.62 -0.18 -1.32 16 3 H 0.12 1.17 7.96 -51.92 -0.41 0.75 16 4 C -0.15 -1.47 4.94 -27.88 -0.14 -1.61 16 5 C 0.52 6.70 7.46 -10.99 -0.08 6.62 16 6 O -0.54 -8.35 13.65 5.55 0.08 -8.27 16 7 N -0.71 -9.34 4.32 -53.81 -0.23 -9.57 16 8 C 0.14 2.03 1.82 -67.93 -0.12 1.90 16 9 H 0.09 1.45 7.61 -51.93 -0.40 1.05 16 10 C 0.15 2.54 5.24 -4.04 -0.02 2.52 16 11 N -0.76 -16.69 5.26 -59.91 -0.32 -17.01 16 12 C -0.25 -6.66 10.47 -15.06 -0.16 -6.82 16 13 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 14 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 15 N -0.93 -28.55 13.97 55.49 0.78 -27.77 16 16 Si 0.88 21.60 27.74 -169.99 -4.71 16.89 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 20 C -0.10 -1.17 2.92 -89.50 -0.26 -1.43 16 21 C -0.12 -1.35 5.83 -25.07 -0.15 -1.49 16 22 C -0.12 -1.24 6.91 -24.74 -0.17 -1.41 16 23 C -0.12 -1.31 6.83 -25.07 -0.17 -1.49 16 24 C -0.12 -1.41 5.93 -25.61 -0.15 -1.56 16 25 C 0.45 4.59 2.69 37.16 0.10 4.69 16 26 F -0.18 -2.00 16.37 2.25 0.04 -1.96 16 27 F -0.18 -1.95 16.80 2.25 0.04 -1.91 16 28 F -0.19 -1.91 16.71 2.25 0.04 -1.87 16 29 H 0.06 0.68 7.80 -51.93 -0.41 0.27 16 30 H 0.10 1.26 5.95 -51.93 -0.31 0.95 16 31 H 0.07 0.64 7.80 -51.93 -0.41 0.23 16 32 H 0.11 1.03 7.94 -51.93 -0.41 0.62 16 33 H 0.11 0.85 7.66 -51.93 -0.40 0.45 16 34 H 0.41 4.96 8.58 -40.82 -0.35 4.61 16 35 H 0.04 0.64 5.98 -51.93 -0.31 0.33 16 36 H 0.05 0.80 6.41 -51.93 -0.33 0.46 16 37 H 0.36 8.01 5.29 -40.82 -0.22 7.79 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.08 0.93 5.68 -51.93 -0.30 0.64 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.95 6.17 -51.93 -0.32 0.63 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -30.84 376.99 -7.01 -37.85 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.11 Total: 10.59 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.28 Total: -2.64 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.23 Total: -54.35 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.08 Total: -8.27 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.11 Total: -5.74 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.84 -7.01 -37.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754650532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.301 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds