Wall clock time and date at job start Sat Apr 11 2020 04:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46955 * 2 1 4 4 C 1.53003 * 109.47349 * 120.00048 * 2 1 3 5 5 C 1.50706 * 109.46951 * 294.99876 * 4 2 1 6 6 O 1.21283 * 119.99824 * 0.02562 * 5 4 2 7 7 N 1.34769 * 119.99755 * 179.97438 * 5 4 2 8 8 C 1.46498 * 120.00029 * 174.89631 * 7 5 4 9 9 H 1.09003 * 109.47122 * 38.30495 * 8 7 5 10 10 C 1.52997 * 109.47611 * 158.30313 * 8 7 5 11 11 N 1.46503 * 109.47173 * 302.16935 * 10 8 7 12 12 C 1.36939 * 119.99932 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99873 * 0.02562 * 12 11 10 14 14 C 1.38804 * 119.99860 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00247 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00099 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47215 * 89.99634 * 16 14 12 18 18 H 1.48507 * 109.47221 * 209.99720 * 16 14 12 19 19 H 1.48499 * 109.47007 * 329.99779 * 16 14 12 20 20 C 1.52998 * 109.47174 * 278.30815 * 8 7 5 21 21 C 1.54277 * 110.02909 * 299.42938 * 20 8 7 22 22 C 1.54891 * 104.19355 * 217.10188 * 21 20 8 23 23 C 1.54892 * 102.74969 * 37.94825 * 22 21 20 24 24 C 1.53873 * 110.03663 * 182.26868 * 20 8 7 25 25 C 1.52999 * 109.47039 * 240.00191 * 2 1 3 26 26 F 1.39896 * 109.47026 * 299.99401 * 25 2 1 27 27 F 1.39895 * 109.47514 * 60.00196 * 25 2 1 28 28 F 1.39907 * 109.46941 * 179.97438 * 25 2 1 29 29 H 1.09000 * 109.46607 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47210 * 299.99964 * 1 2 3 31 31 H 1.08995 * 109.47210 * 60.00130 * 1 2 3 32 32 H 1.08994 * 109.47133 * 55.00119 * 4 2 1 33 33 H 1.09000 * 109.47100 * 175.00367 * 4 2 1 34 34 H 0.96999 * 120.00291 * 354.89533 * 7 5 4 35 35 H 1.09000 * 109.46926 * 62.16616 * 10 8 7 36 36 H 1.08997 * 109.47504 * 182.16645 * 10 8 7 37 37 H 0.96997 * 119.99524 * 359.97438 * 11 10 8 38 38 H 0.97000 * 120.00245 * 180.02562 * 15 14 12 39 39 H 1.09001 * 110.02062 * 60.87250 * 20 8 7 40 40 H 1.09001 * 110.48557 * 335.78406 * 21 20 8 41 41 H 1.08996 * 110.48171 * 98.42758 * 21 20 8 42 42 H 1.08995 * 110.76185 * 279.62655 * 22 21 20 43 43 H 1.08999 * 110.91235 * 156.32680 * 22 21 20 44 44 H 1.09000 * 110.48721 * 203.37630 * 23 22 21 45 45 H 1.08995 * 110.60425 * 80.78460 * 23 22 21 46 46 H 1.08999 * 110.02980 * 238.57183 * 24 20 8 47 47 H 1.09006 * 110.02963 * 359.97438 * 24 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0571 2.4766 6 8 1.0110 1.0870 2.3633 7 7 1.9846 -0.3919 3.7001 8 6 1.6958 0.4191 4.8855 9 1 0.7274 0.9050 4.7662 10 6 1.6664 -0.4795 6.1235 11 7 0.6610 -1.5293 5.9411 12 6 0.4551 -2.4586 6.9257 13 1 1.0336 -2.4172 7.8367 14 6 -0.4979 -3.4529 6.7531 15 7 -0.6962 -4.3458 7.6996 16 14 -1.4989 -3.5240 5.1776 17 1 -0.7950 -4.3712 4.1816 18 1 -2.8349 -4.1050 5.4658 19 1 -1.6628 -2.1522 4.6330 20 6 2.7828 1.4827 5.0530 21 6 4.1581 0.8083 5.2372 22 6 4.8869 1.7070 6.2669 23 6 3.7493 2.1033 7.2404 24 6 2.5230 2.3060 6.3267 25 6 2.0400 -0.7212 -1.2493 26 9 1.5737 -2.0402 -1.2492 27 9 1.5737 -0.0617 -2.3915 28 9 3.4390 -0.7207 -1.2495 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6055 -1.7198 1.2951 33 1 3.1264 -0.7994 1.2056 34 1 2.4227 -1.2519 3.7959 35 1 2.6463 -0.9355 6.2648 36 1 1.4137 0.1174 6.9998 37 1 0.1412 -1.5662 5.1230 38 1 -1.3619 -5.0409 7.5789 39 1 2.8011 2.1379 4.1821 40 1 4.0382 -0.2016 5.6295 41 1 4.7033 0.7898 4.2936 42 1 5.3053 2.5890 5.7821 43 1 5.6647 1.1492 6.7885 44 1 3.9961 3.0299 7.7587 45 1 3.5625 1.3042 7.9578 46 1 2.4159 3.3609 6.0740 47 1 1.6222 1.9481 6.8253 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754650532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:52 Heat of formation + Delta-G solvation = -221.408318 kcal Electronic energy + Delta-G solvation = -30865.517606 eV Core-core repulsion = 26245.720579 eV Total energy + Delta-G solvation = -4619.797027 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -51.13592 -48.61806 -48.59797 -41.33729 -39.56049 -36.93801 -36.06722 -35.21313 -33.34490 -31.46957 -29.56838 -28.92228 -27.99233 -27.28197 -24.80207 -23.46069 -22.66464 -21.60792 -21.18934 -20.28415 -19.69889 -19.45620 -19.29493 -18.62818 -17.64162 -17.31801 -16.79151 -16.67035 -16.24665 -15.93139 -15.57137 -15.56110 -15.41294 -15.07705 -15.02554 -14.80673 -14.78816 -14.73744 -14.59825 -14.42834 -14.27060 -14.05081 -13.64889 -13.35852 -13.27277 -12.84547 -12.62243 -12.44705 -12.39506 -12.29853 -12.16936 -12.16278 -11.89298 -11.84941 -11.82697 -11.82141 -11.39626 -11.18955 -10.93827 -10.81871 -9.96899 -9.29020 -8.03064 -5.36247 1.35294 1.38216 1.45017 1.60107 1.65787 2.18148 2.46181 2.79708 2.99520 3.04348 3.29076 3.47968 3.59029 3.72069 3.75747 3.83396 3.88802 4.01758 4.11405 4.22271 4.34489 4.47840 4.51276 4.52774 4.63813 4.71399 4.74329 4.78110 4.85746 4.88278 4.89441 4.92118 5.11596 5.14736 5.17576 5.21966 5.31049 5.37904 5.50474 5.55560 5.63782 5.76652 6.20282 6.55151 7.06956 7.22624 7.82223 8.00519 9.18266 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.008187 B = 0.004365 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3419.308749 B = 6412.545170 C = 9030.607127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.110 4.110 3 H 0.126 0.874 4 C -0.144 4.144 5 C 0.520 3.480 6 O -0.568 6.568 7 N -0.711 5.711 8 C 0.152 3.848 9 H 0.065 0.935 10 C 0.149 3.851 11 N -0.756 5.756 12 C -0.229 4.229 13 H 0.062 0.938 14 C -0.057 4.057 15 N -0.981 5.981 16 Si 0.947 3.053 17 H -0.270 1.270 18 H -0.300 1.300 19 H -0.263 1.263 20 C -0.087 4.087 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.123 4.123 25 C 0.458 3.542 26 F -0.186 7.186 27 F -0.186 7.186 28 F -0.184 7.184 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.130 0.870 34 H 0.412 0.588 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.364 0.636 38 H 0.257 0.743 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.256 12.592 -15.850 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.130 4.130 3 H 0.144 0.856 4 C -0.183 4.183 5 C 0.307 3.693 6 O -0.447 6.447 7 N -0.362 5.362 8 C 0.047 3.953 9 H 0.083 0.917 10 C 0.023 3.977 11 N -0.402 5.402 12 C -0.360 4.360 13 H 0.080 0.920 14 C -0.249 4.249 15 N -0.632 5.632 16 Si 0.775 3.225 17 H -0.196 1.196 18 H -0.227 1.227 19 H -0.188 1.188 20 C -0.107 4.107 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.161 4.161 24 C -0.161 4.161 25 C 0.404 3.596 26 F -0.167 7.167 27 F -0.167 7.167 28 F -0.165 7.165 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.148 0.852 34 H 0.248 0.752 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.197 0.803 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.877 13.216 -15.748 23.259 hybrid contribution -0.812 -1.006 -0.627 1.437 sum 10.065 12.209 -16.375 22.771 Atomic orbital electron populations 1.21975 0.91466 1.03499 1.04684 1.22098 0.99867 1.01768 0.89296 0.85560 1.21767 1.05509 1.00775 0.90276 1.20574 0.78361 0.85377 0.84950 1.90665 1.40677 1.26455 1.86952 1.45987 1.61353 1.23377 1.05512 1.21095 0.98591 0.91562 0.84044 0.91701 1.21180 0.92347 0.88842 0.95340 1.42703 1.45360 1.32973 1.19144 1.19010 1.15858 1.04009 0.97138 0.92045 1.25389 1.00950 0.97758 1.00819 1.69866 1.38460 1.19260 1.35566 0.85540 0.78264 0.78126 0.80599 1.19611 1.22657 1.18833 1.21990 0.94604 0.95545 0.98607 1.22480 0.94218 0.99344 0.99621 1.22461 0.97236 0.99478 0.96476 1.22348 0.94640 1.01504 0.97593 1.22231 0.98913 0.99854 0.95104 1.20612 0.75281 0.77519 0.86169 1.93178 1.88479 1.38241 1.96824 1.93169 1.88533 1.80808 1.54194 1.93182 1.30133 1.96420 1.96808 0.91591 0.90120 0.90612 0.86622 0.85163 0.75238 0.93396 0.94194 0.80293 0.93383 0.91091 0.91397 0.91119 0.90870 0.91059 0.90732 0.92408 0.91129 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 8.69 71.98 0.63 -2.49 16 2 C -0.11 -1.94 2.01 -10.79 -0.02 -1.97 16 3 H 0.13 2.14 7.96 -2.38 -0.02 2.13 16 4 C -0.14 -2.48 4.94 29.85 0.15 -2.33 16 5 C 0.52 12.42 7.46 87.66 0.65 13.07 16 6 O -0.57 -16.80 13.65 -3.04 -0.04 -16.85 16 7 N -0.71 -17.44 4.32 -442.54 -1.91 -19.35 16 8 C 0.15 4.25 1.82 44.99 0.08 4.34 16 9 H 0.06 2.13 7.61 -2.39 -0.02 2.11 16 10 C 0.15 5.06 5.24 86.38 0.45 5.51 16 11 N -0.76 -32.96 5.26 -343.46 -1.81 -34.76 16 12 C -0.23 -12.47 10.47 84.03 0.88 -11.59 16 13 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 14 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 15 N -0.98 -61.43 13.97 21.65 0.30 -61.13 16 16 Si 0.95 44.58 27.74 68.60 1.90 46.48 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 19 H -0.26 -11.59 6.52 99.48 0.65 -10.95 16 20 C -0.09 -2.00 2.92 -10.07 -0.03 -2.03 16 21 C -0.12 -2.35 5.83 31.67 0.18 -2.17 16 22 C -0.12 -2.09 6.91 31.89 0.22 -1.87 16 23 C -0.12 -2.42 6.83 31.67 0.22 -2.20 16 24 C -0.12 -2.72 5.93 31.32 0.19 -2.53 16 25 C 0.46 8.24 2.69 71.98 0.19 8.43 16 26 F -0.19 -3.67 16.37 44.97 0.74 -2.94 16 27 F -0.19 -3.59 16.80 44.97 0.76 -2.83 16 28 F -0.18 -3.31 16.71 44.97 0.75 -2.56 16 29 H 0.07 1.26 7.80 -2.39 -0.02 1.24 16 30 H 0.08 1.94 5.95 -2.38 -0.01 1.93 16 31 H 0.07 1.32 7.80 -2.39 -0.02 1.30 16 32 H 0.12 1.88 7.94 -2.39 -0.02 1.86 16 33 H 0.13 1.64 7.66 -2.39 -0.02 1.62 16 34 H 0.41 9.19 8.58 -92.71 -0.80 8.40 16 35 H 0.05 1.58 5.98 -2.39 -0.01 1.57 16 36 H 0.04 1.43 6.41 -2.39 -0.02 1.41 16 37 H 0.36 15.60 5.29 -92.71 -0.49 15.11 16 38 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 1.49 5.68 -2.39 -0.01 1.47 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.06 1.47 6.17 -2.38 -0.01 1.46 16 Total: -1.00 -66.38 376.99 4.61 -61.77 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: -0.34 Total: 32.80 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 4.26 Total: -0.64 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -3.41 Total: -115.24 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.04 Total: -16.85 kcal Atomic # 9 Polarization: -10.57 SS G_CDS: 2.24 Total: -8.33 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.48 kcal Total: -66.38 4.61 -61.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754650532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.639 kcal (2) G-P(sol) polarization free energy of solvation -66.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds