Wall clock time and date at job start Sat Apr 11 2020 04:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47073 * 2 1 4 4 C 1.53007 * 109.46834 * 240.00086 * 2 1 3 5 5 C 1.50695 * 109.47002 * 64.99895 * 4 2 1 6 6 O 1.21279 * 119.99982 * 0.02562 * 5 4 2 7 7 N 1.34770 * 120.00067 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00378 * 174.74981 * 7 5 4 9 9 H 1.09003 * 109.46832 * 4.65882 * 8 7 5 10 10 C 1.53005 * 109.47068 * 124.64946 * 8 7 5 11 11 N 1.46498 * 109.47340 * 305.00659 * 10 8 7 12 12 C 1.36938 * 119.99935 * 180.02562 * 11 10 8 13 13 H 1.07994 * 119.99995 * 359.97438 * 12 11 10 14 14 C 1.38807 * 119.99769 * 179.97438 * 12 11 10 15 15 N 1.31617 * 120.00279 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99823 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47224 * 59.99984 * 16 14 12 18 18 H 1.48502 * 109.47334 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47341 * 300.00013 * 16 14 12 20 20 C 1.52997 * 109.47196 * 244.65360 * 8 7 5 21 21 C 1.54266 * 110.03025 * 181.42073 * 20 8 7 22 22 C 1.54884 * 104.19645 * 217.10479 * 21 20 8 23 23 C 1.54891 * 102.75028 * 37.94053 * 22 21 20 24 24 C 1.53867 * 110.03486 * 64.25562 * 20 8 7 25 25 C 1.53000 * 109.47005 * 120.00426 * 2 1 3 26 26 F 1.39904 * 109.46931 * 180.02562 * 25 2 1 27 27 F 1.39905 * 109.47127 * 299.99438 * 25 2 1 28 28 F 1.39896 * 109.47529 * 59.99798 * 25 2 1 29 29 H 1.09000 * 109.47160 * 59.99588 * 1 2 3 30 30 H 1.08999 * 109.47073 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46945 * 299.99953 * 1 2 3 32 32 H 1.08999 * 109.46889 * 184.99945 * 4 2 1 33 33 H 1.08998 * 109.47091 * 305.00011 * 4 2 1 34 34 H 0.97001 * 119.99785 * 354.75338 * 7 5 4 35 35 H 1.09000 * 109.46724 * 65.00603 * 10 8 7 36 36 H 1.08995 * 109.47345 * 185.00033 * 10 8 7 37 37 H 0.97000 * 119.99658 * 359.97438 * 11 10 8 38 38 H 0.97002 * 119.99964 * 180.02562 * 15 14 12 39 39 H 1.09006 * 110.01458 * 302.85918 * 20 8 7 40 40 H 1.09004 * 110.49087 * 335.78488 * 21 20 8 41 41 H 1.09002 * 110.48772 * 98.42529 * 21 20 8 42 42 H 1.09005 * 110.75884 * 279.63055 * 22 21 20 43 43 H 1.09005 * 110.91853 * 156.33069 * 22 21 20 44 44 H 1.08997 * 110.49025 * 203.37626 * 23 22 21 45 45 H 1.09008 * 110.59571 * 80.79185 * 23 22 21 46 46 H 1.09001 * 110.03532 * 238.56896 * 24 20 8 47 47 H 1.09007 * 110.03125 * 359.97438 * 24 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6412 0.0570 -2.4766 6 8 1.0116 1.0874 -2.3632 7 7 1.9851 -0.3913 -3.7001 8 6 1.5008 0.3010 -4.8969 9 1 0.9508 1.1947 -4.6020 10 6 2.6908 0.7001 -5.7719 11 7 3.6349 1.4927 -4.9804 12 6 4.7840 1.9648 -5.5565 13 1 4.9944 1.7525 -6.5943 14 6 5.6783 2.7162 -4.8067 15 7 5.4217 2.9754 -3.5420 16 14 7.2461 3.3596 -5.5924 17 1 6.9007 4.2460 -6.7327 18 1 8.0245 4.1274 -4.5875 19 1 8.0593 2.2175 -6.0819 20 6 0.5770 -0.6293 -5.6856 21 6 0.0874 0.0748 -6.9678 22 6 -1.3783 -0.4000 -7.1259 23 6 -1.8858 -0.4356 -5.6630 24 6 -0.6776 -0.9538 -4.8560 25 6 2.0400 -0.7213 1.2492 26 9 3.4390 -0.7208 1.2495 27 9 1.5737 -0.0618 2.3916 28 9 1.5736 -2.0403 1.2492 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7995 -1.2057 33 1 1.6053 -1.7198 -1.2952 34 1 2.5533 -1.1725 -3.7883 35 1 3.1885 -0.1972 -6.1396 36 1 2.3383 1.2919 -6.6166 37 1 3.4457 1.6836 -4.0484 38 1 6.0465 3.5008 -3.0181 39 1 1.1036 -1.5488 -5.9415 40 1 0.1268 1.1575 -6.8474 41 1 0.6839 -0.2364 -7.8255 42 1 -1.4165 -1.3938 -7.5722 43 1 -1.9558 0.3101 -7.7180 44 1 -2.7295 -1.1192 -5.5683 45 1 -2.1666 0.5638 -5.3301 46 1 -0.7604 -2.0308 -4.7099 47 1 -0.6282 -0.4488 -3.8912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754650533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:56 Heat of formation + Delta-G solvation = -209.825749 kcal Electronic energy + Delta-G solvation = -30895.394694 eV Core-core repulsion = 26276.099924 eV Total energy + Delta-G solvation = -4619.294769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.12708 -47.61163 -47.57975 -40.02164 -38.26543 -35.60984 -34.74895 -33.55617 -31.34942 -29.83182 -28.67313 -27.88762 -26.36384 -26.01942 -23.35755 -21.97529 -21.12286 -20.48268 -20.14413 -19.56188 -18.57457 -18.32370 -17.58941 -17.17606 -16.23513 -16.13023 -15.61836 -15.36414 -14.89873 -14.63323 -14.47763 -14.38977 -14.02738 -13.94293 -13.76147 -13.71366 -13.53576 -13.33001 -13.23960 -13.12462 -13.03471 -12.58638 -12.31407 -12.08659 -11.45943 -11.43028 -11.36655 -11.29644 -11.19718 -11.06070 -10.99100 -10.89828 -10.79798 -10.63569 -10.50853 -10.30805 -10.07500 -9.71534 -9.51276 -8.87589 -8.61057 -6.91229 -5.74598 -3.03920 2.69385 2.90646 3.36422 3.43930 3.48403 3.49720 3.82415 4.03831 4.05784 4.54977 4.63199 4.66849 4.69248 4.78502 4.84155 5.03096 5.20637 5.25919 5.41121 5.48748 5.52053 5.54969 5.56768 5.61520 5.68837 5.71903 5.73111 5.87777 5.88729 5.90336 5.98102 6.02502 6.11368 6.18005 6.27726 6.31336 6.36764 6.48056 6.51110 6.69236 6.96506 7.69073 7.79921 8.43408 8.52029 9.54924 10.12984 10.48157 11.47526 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.006923 B = 0.004724 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4043.386552 B = 5925.745150 C = 9445.446588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 H 0.126 0.874 4 C -0.144 4.144 5 C 0.526 3.474 6 O -0.536 6.536 7 N -0.709 5.709 8 C 0.138 3.862 9 H 0.101 0.899 10 C 0.143 3.857 11 N -0.728 5.728 12 C -0.242 4.242 13 H 0.068 0.932 14 C -0.012 4.012 15 N -0.930 5.930 16 Si 0.906 3.094 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.287 1.287 20 C -0.097 4.097 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.117 4.117 25 C 0.453 3.547 26 F -0.181 7.181 27 F -0.184 7.184 28 F -0.186 7.186 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.399 0.601 35 H 0.019 0.981 36 H 0.030 0.970 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.742 -12.167 3.250 18.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.137 4.137 3 H 0.144 0.856 4 C -0.184 4.184 5 C 0.312 3.688 6 O -0.413 6.413 7 N -0.358 5.358 8 C 0.033 3.967 9 H 0.119 0.881 10 C 0.014 3.986 11 N -0.373 5.373 12 C -0.374 4.374 13 H 0.086 0.914 14 C -0.208 4.208 15 N -0.578 5.578 16 Si 0.737 3.263 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.213 1.213 20 C -0.117 4.117 21 C -0.154 4.154 22 C -0.162 4.162 23 C -0.162 4.162 24 C -0.155 4.155 25 C 0.399 3.601 26 F -0.163 7.163 27 F -0.165 7.165 28 F -0.167 7.167 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.233 0.767 35 H 0.036 0.964 36 H 0.048 0.952 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.056 -11.404 3.260 18.391 hybrid contribution 1.474 -0.100 0.113 1.482 sum -12.582 -11.504 3.373 17.379 Atomic orbital electron populations 1.21990 0.91185 1.02977 1.05187 1.22160 0.99997 1.02151 0.89384 0.85559 1.21685 1.04384 1.00213 0.92118 1.20012 0.79189 0.85190 0.84376 1.90680 1.40941 1.23460 1.86259 1.45750 1.52056 1.32687 1.05332 1.21462 0.95341 0.95461 0.84415 0.88099 1.21017 0.89404 0.94567 0.93567 1.42291 1.21186 1.62174 1.11641 1.19155 0.96588 1.26505 0.95113 0.91363 1.24735 0.99043 1.01067 0.95950 1.69662 1.37416 1.43866 1.06854 0.86293 0.83399 0.78595 0.78012 1.21304 1.21705 1.21341 1.22092 0.95698 0.98751 0.95157 1.22392 0.95390 1.00859 0.96792 1.22492 0.96303 1.00849 0.96542 1.22351 0.97439 1.01094 0.95310 1.22161 0.93875 1.00304 0.99158 1.20695 0.75578 0.77506 0.86356 1.93207 1.29894 1.96378 1.96785 1.93167 1.88517 1.80776 1.54047 1.93147 1.88507 1.38226 1.96858 0.88261 0.92108 0.91624 0.87398 0.88022 0.76700 0.96371 0.95189 0.77966 0.93482 0.90924 0.90915 0.91418 0.91856 0.91824 0.92248 0.91672 0.92400 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.69 37.16 0.32 -1.40 16 2 C -0.12 -1.43 2.01 -90.62 -0.18 -1.61 16 3 H 0.13 1.74 7.95 -51.93 -0.41 1.33 16 4 C -0.14 -1.72 4.94 -27.88 -0.14 -1.85 16 5 C 0.53 7.91 6.83 -10.99 -0.08 7.84 16 6 O -0.54 -9.75 13.30 5.56 0.07 -9.68 16 7 N -0.71 -10.12 4.02 -53.81 -0.22 -10.34 16 8 C 0.14 2.13 1.71 -67.93 -0.12 2.01 16 9 H 0.10 1.83 6.91 -51.93 -0.36 1.48 16 10 C 0.14 2.73 5.60 -4.04 -0.02 2.70 16 11 N -0.73 -18.15 5.43 -59.91 -0.33 -18.48 16 12 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 13 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 14 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 15 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 16 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 C -0.10 -1.16 2.71 -89.51 -0.24 -1.40 16 21 C -0.12 -1.34 5.32 -25.07 -0.13 -1.47 16 22 C -0.12 -1.22 6.91 -24.74 -0.17 -1.39 16 23 C -0.12 -1.27 6.83 -25.07 -0.17 -1.44 16 24 C -0.12 -1.30 6.24 -25.62 -0.16 -1.46 16 25 C 0.45 5.49 2.69 37.16 0.10 5.59 16 26 F -0.18 -2.45 16.71 2.25 0.04 -2.41 16 27 F -0.18 -2.31 16.80 2.25 0.04 -2.27 16 28 F -0.19 -2.15 16.37 2.25 0.04 -2.11 16 29 H 0.10 1.26 5.95 -51.93 -0.31 0.95 16 30 H 0.06 0.58 7.80 -51.93 -0.41 0.18 16 31 H 0.06 0.68 7.80 -51.93 -0.41 0.27 16 32 H 0.11 1.31 7.66 -51.93 -0.40 0.92 16 33 H 0.10 0.94 7.94 -51.93 -0.41 0.53 16 34 H 0.40 4.95 8.83 -40.82 -0.36 4.59 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.03 0.58 7.17 -51.93 -0.37 0.21 16 37 H 0.39 10.38 7.31 -40.82 -0.30 10.09 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.93 7.52 -51.93 -0.39 0.54 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.86 6.88 -51.92 -0.36 0.50 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -31.65 383.55 -7.52 -39.17 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -7.41 Total: 11.68 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.24 Total: -1.20 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.18 Total: -56.38 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.68 kcal Atomic # 9 Polarization: -6.91 SS G_CDS: 0.11 Total: -6.80 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.65 -7.52 -39.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754650533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.654 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds