Wall clock time and date at job start Sat Apr 11 2020 04:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47073 * 2 1 4 4 C 1.53007 * 109.46834 * 240.00086 * 2 1 3 5 5 C 1.50695 * 109.47002 * 64.99895 * 4 2 1 6 6 O 1.21279 * 119.99982 * 0.02562 * 5 4 2 7 7 N 1.34770 * 120.00067 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00378 * 174.74981 * 7 5 4 9 9 H 1.09003 * 109.46832 * 4.65882 * 8 7 5 10 10 C 1.53005 * 109.47068 * 124.64946 * 8 7 5 11 11 N 1.46498 * 109.47340 * 305.00659 * 10 8 7 12 12 C 1.36938 * 119.99935 * 180.02562 * 11 10 8 13 13 H 1.07994 * 119.99995 * 359.97438 * 12 11 10 14 14 C 1.38807 * 119.99769 * 179.97438 * 12 11 10 15 15 N 1.31617 * 120.00279 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99823 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47224 * 59.99984 * 16 14 12 18 18 H 1.48502 * 109.47334 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47341 * 300.00013 * 16 14 12 20 20 C 1.52997 * 109.47196 * 244.65360 * 8 7 5 21 21 C 1.54266 * 110.03025 * 181.42073 * 20 8 7 22 22 C 1.54884 * 104.19645 * 217.10479 * 21 20 8 23 23 C 1.54891 * 102.75028 * 37.94053 * 22 21 20 24 24 C 1.53867 * 110.03486 * 64.25562 * 20 8 7 25 25 C 1.53000 * 109.47005 * 120.00426 * 2 1 3 26 26 F 1.39904 * 109.46931 * 180.02562 * 25 2 1 27 27 F 1.39905 * 109.47127 * 299.99438 * 25 2 1 28 28 F 1.39896 * 109.47529 * 59.99798 * 25 2 1 29 29 H 1.09000 * 109.47160 * 59.99588 * 1 2 3 30 30 H 1.08999 * 109.47073 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46945 * 299.99953 * 1 2 3 32 32 H 1.08999 * 109.46889 * 184.99945 * 4 2 1 33 33 H 1.08998 * 109.47091 * 305.00011 * 4 2 1 34 34 H 0.97001 * 119.99785 * 354.75338 * 7 5 4 35 35 H 1.09000 * 109.46724 * 65.00603 * 10 8 7 36 36 H 1.08995 * 109.47345 * 185.00033 * 10 8 7 37 37 H 0.97000 * 119.99658 * 359.97438 * 11 10 8 38 38 H 0.97002 * 119.99964 * 180.02562 * 15 14 12 39 39 H 1.09006 * 110.01458 * 302.85918 * 20 8 7 40 40 H 1.09004 * 110.49087 * 335.78488 * 21 20 8 41 41 H 1.09002 * 110.48772 * 98.42529 * 21 20 8 42 42 H 1.09005 * 110.75884 * 279.63055 * 22 21 20 43 43 H 1.09005 * 110.91853 * 156.33069 * 22 21 20 44 44 H 1.08997 * 110.49025 * 203.37626 * 23 22 21 45 45 H 1.09008 * 110.59571 * 80.79185 * 23 22 21 46 46 H 1.09001 * 110.03532 * 238.56896 * 24 20 8 47 47 H 1.09007 * 110.03125 * 359.97438 * 24 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6412 0.0570 -2.4766 6 8 1.0116 1.0874 -2.3632 7 7 1.9851 -0.3913 -3.7001 8 6 1.5008 0.3010 -4.8969 9 1 0.9508 1.1947 -4.6020 10 6 2.6908 0.7001 -5.7719 11 7 3.6349 1.4927 -4.9804 12 6 4.7840 1.9648 -5.5565 13 1 4.9944 1.7525 -6.5943 14 6 5.6783 2.7162 -4.8067 15 7 5.4217 2.9754 -3.5420 16 14 7.2461 3.3596 -5.5924 17 1 6.9007 4.2460 -6.7327 18 1 8.0245 4.1274 -4.5875 19 1 8.0593 2.2175 -6.0819 20 6 0.5770 -0.6293 -5.6856 21 6 0.0874 0.0748 -6.9678 22 6 -1.3783 -0.4000 -7.1259 23 6 -1.8858 -0.4356 -5.6630 24 6 -0.6776 -0.9538 -4.8560 25 6 2.0400 -0.7213 1.2492 26 9 3.4390 -0.7208 1.2495 27 9 1.5737 -0.0618 2.3916 28 9 1.5736 -2.0403 1.2492 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7995 -1.2057 33 1 1.6053 -1.7198 -1.2952 34 1 2.5533 -1.1725 -3.7883 35 1 3.1885 -0.1972 -6.1396 36 1 2.3383 1.2919 -6.6166 37 1 3.4457 1.6836 -4.0484 38 1 6.0465 3.5008 -3.0181 39 1 1.1036 -1.5488 -5.9415 40 1 0.1268 1.1575 -6.8474 41 1 0.6839 -0.2364 -7.8255 42 1 -1.4165 -1.3938 -7.5722 43 1 -1.9558 0.3101 -7.7180 44 1 -2.7295 -1.1192 -5.5683 45 1 -2.1666 0.5638 -5.3301 46 1 -0.7604 -2.0308 -4.7099 47 1 -0.6282 -0.4488 -3.8912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754650533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:55 Heat of formation + Delta-G solvation = -228.612187 kcal Electronic energy + Delta-G solvation = -30896.209335 eV Core-core repulsion = 26276.099924 eV Total energy + Delta-G solvation = -4620.109410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.13039 -48.61796 -48.58246 -41.21910 -39.31140 -36.94438 -35.97643 -35.17562 -33.08130 -31.25933 -29.58304 -28.85736 -27.67669 -27.23496 -25.09600 -23.29884 -22.29139 -21.54816 -21.19442 -20.58348 -19.60364 -19.35947 -19.16448 -18.60747 -17.38643 -17.25159 -16.78495 -16.68614 -16.14832 -15.97707 -15.60288 -15.48290 -15.18086 -15.09351 -15.03288 -14.86695 -14.76970 -14.72267 -14.38298 -14.23924 -14.12830 -13.90536 -13.54502 -13.29403 -12.99169 -12.81567 -12.58746 -12.40369 -12.34748 -12.27115 -12.22372 -12.12251 -11.89757 -11.86942 -11.78969 -11.59461 -11.41037 -11.32189 -10.97576 -10.71252 -9.86263 -8.98123 -7.93267 -5.22287 1.46291 1.49221 1.55415 1.67312 1.71597 2.25497 2.55932 2.81791 3.02245 3.06525 3.40106 3.58489 3.64158 3.76520 3.84587 3.87601 3.99377 4.17676 4.23018 4.28762 4.43502 4.52483 4.57118 4.62817 4.64369 4.75828 4.78262 4.81381 4.86561 4.91769 4.94858 4.97173 5.07366 5.13725 5.21209 5.26880 5.31428 5.38019 5.49234 5.52943 5.55849 5.71245 6.27216 6.63837 7.33879 7.35989 8.11475 8.33977 9.29479 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.006923 B = 0.004724 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4043.386552 B = 5925.745150 C = 9445.446588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 H 0.104 0.896 4 C -0.137 4.137 5 C 0.521 3.479 6 O -0.573 6.573 7 N -0.704 5.704 8 C 0.151 3.849 9 H 0.068 0.932 10 C 0.141 3.859 11 N -0.741 5.741 12 C -0.244 4.244 13 H 0.077 0.923 14 C -0.075 4.075 15 N -0.968 5.968 16 Si 0.972 3.028 17 H -0.280 1.280 18 H -0.298 1.298 19 H -0.275 1.275 20 C -0.088 4.088 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.112 4.112 25 C 0.460 3.540 26 F -0.190 7.190 27 F -0.186 7.186 28 F -0.178 7.178 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.410 0.590 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.373 0.627 38 H 0.249 0.751 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.050 0.950 46 H 0.077 0.923 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.288 -14.417 2.176 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.136 4.136 3 H 0.122 0.878 4 C -0.176 4.176 5 C 0.309 3.691 6 O -0.453 6.453 7 N -0.354 5.354 8 C 0.046 3.954 9 H 0.086 0.914 10 C 0.014 3.986 11 N -0.384 5.384 12 C -0.376 4.376 13 H 0.095 0.905 14 C -0.267 4.267 15 N -0.619 5.619 16 Si 0.801 3.199 17 H -0.206 1.206 18 H -0.225 1.225 19 H -0.201 1.201 20 C -0.108 4.108 21 C -0.158 4.158 22 C -0.154 4.154 23 C -0.162 4.162 24 C -0.150 4.150 25 C 0.406 3.594 26 F -0.171 7.171 27 F -0.167 7.167 28 F -0.159 7.159 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.154 0.846 34 H 0.246 0.754 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.205 0.795 38 H 0.058 0.942 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.613 -13.702 2.138 20.146 hybrid contribution 1.592 0.594 0.406 1.747 sum -13.021 -13.107 2.544 18.650 Atomic orbital electron populations 1.21923 0.90162 1.04041 1.04539 1.22097 1.00823 1.01033 0.89658 0.87820 1.21687 1.04425 1.01235 0.90282 1.20541 0.78477 0.84868 0.85261 1.90670 1.42641 1.25173 1.86794 1.45709 1.52040 1.32706 1.04930 1.21209 0.94033 0.95560 0.84598 0.91353 1.21210 0.89689 0.94067 0.93603 1.42499 1.21581 1.62835 1.11486 1.19596 0.97166 1.25419 0.95422 0.90540 1.25548 1.02460 1.02184 0.96512 1.69838 1.38477 1.45232 1.08344 0.85238 0.79629 0.78105 0.76929 1.20611 1.22484 1.20090 1.22046 0.95482 0.98358 0.94905 1.22417 0.97080 0.99590 0.96760 1.22468 0.94731 1.01865 0.96373 1.22357 0.97687 1.00759 0.95407 1.22112 0.93622 1.01260 0.98015 1.20554 0.75081 0.77696 0.86067 1.93193 1.30704 1.96440 1.96809 1.93164 1.88487 1.80910 1.54162 1.93161 1.88341 1.37600 1.96816 0.90065 0.90126 0.91084 0.87508 0.84621 0.75380 0.94927 0.95292 0.79522 0.94226 0.89163 0.93031 0.90671 0.90131 0.91228 0.90434 0.93097 0.90428 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.69 71.98 0.63 -2.59 16 2 C -0.12 -2.81 2.01 -10.79 -0.02 -2.83 16 3 H 0.10 3.00 7.95 -2.39 -0.02 2.98 16 4 C -0.14 -3.16 4.94 29.85 0.15 -3.01 16 5 C 0.52 15.84 6.83 87.66 0.60 16.44 16 6 O -0.57 -21.79 13.30 -3.03 -0.04 -21.83 16 7 N -0.70 -19.86 4.02 -442.54 -1.78 -21.64 16 8 C 0.15 4.67 1.71 44.99 0.08 4.75 16 9 H 0.07 2.60 6.91 -2.39 -0.02 2.58 16 10 C 0.14 5.36 5.60 86.38 0.48 5.85 16 11 N -0.74 -37.43 5.43 -343.46 -1.87 -39.30 16 12 C -0.24 -13.59 9.99 84.03 0.84 -12.75 16 13 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 14 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 15 N -0.97 -60.31 13.06 21.65 0.28 -60.03 16 16 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 20 C -0.09 -1.97 2.71 -10.07 -0.03 -2.00 16 21 C -0.12 -2.60 5.32 31.67 0.17 -2.44 16 22 C -0.12 -2.01 6.91 31.88 0.22 -1.79 16 23 C -0.12 -2.31 6.83 31.67 0.22 -2.09 16 24 C -0.11 -2.29 6.24 31.31 0.20 -2.09 16 25 C 0.46 10.75 2.69 71.98 0.19 10.94 16 26 F -0.19 -5.04 16.71 44.97 0.75 -4.29 16 27 F -0.19 -4.54 16.80 44.97 0.76 -3.79 16 28 F -0.18 -3.74 16.37 44.97 0.74 -3.01 16 29 H 0.08 2.10 5.95 -2.39 -0.01 2.08 16 30 H 0.08 1.39 7.80 -2.39 -0.02 1.37 16 31 H 0.07 1.43 7.80 -2.39 -0.02 1.41 16 32 H 0.11 2.54 7.66 -2.39 -0.02 2.52 16 33 H 0.14 2.18 7.94 -2.39 -0.02 2.16 16 34 H 0.41 9.65 8.83 -92.71 -0.82 8.83 16 35 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.03 1.12 7.17 -2.39 -0.02 1.11 16 37 H 0.37 20.66 7.31 -92.71 -0.68 19.98 16 38 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.05 1.33 7.52 -2.39 -0.02 1.31 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.05 1.16 6.88 -2.38 -0.02 1.15 16 Total: -1.00 -69.24 383.55 4.55 -64.69 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: -0.50 Total: 38.20 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 4.18 Total: 2.53 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -3.36 Total: -120.96 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.04 Total: -21.83 kcal Atomic # 9 Polarization: -13.33 SS G_CDS: 2.24 Total: -11.09 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -69.24 4.55 -64.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754650533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.924 kcal (2) G-P(sol) polarization free energy of solvation -69.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds