Wall clock time and date at job start Sat Apr 11 2020 04:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46856 * 2 1 4 4 C 1.52996 * 109.47012 * 240.00213 * 2 1 3 5 5 C 1.50698 * 109.47255 * 65.00345 * 4 2 1 6 6 O 1.21276 * 119.99941 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99945 * 179.97438 * 5 4 2 8 8 C 1.46496 * 119.99749 * 184.72238 * 7 5 4 9 9 H 1.08994 * 109.47407 * 326.20858 * 8 7 5 10 10 C 1.52997 * 109.47051 * 206.20162 * 8 7 5 11 11 N 1.46499 * 109.47185 * 55.00314 * 10 8 7 12 12 C 1.36936 * 120.00401 * 179.97438 * 11 10 8 13 13 H 1.08001 * 119.99745 * 0.02562 * 12 11 10 14 14 C 1.38813 * 120.00271 * 179.97438 * 12 11 10 15 15 N 1.31618 * 119.99890 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00205 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47005 * 89.99962 * 16 14 12 18 18 H 1.48497 * 109.47481 * 210.00317 * 16 14 12 19 19 H 1.48505 * 109.47110 * 330.00285 * 16 14 12 20 20 C 1.52998 * 109.46693 * 86.20733 * 8 7 5 21 21 C 1.54269 * 110.03314 * 180.54310 * 20 8 7 22 22 C 1.54887 * 104.19847 * 217.10695 * 21 20 8 23 23 C 1.54891 * 102.74936 * 37.93940 * 22 21 20 24 24 C 1.53876 * 110.03713 * 63.37832 * 20 8 7 25 25 C 1.53003 * 109.47053 * 119.99983 * 2 1 3 26 26 F 1.39900 * 109.47087 * 179.97438 * 25 2 1 27 27 F 1.39899 * 109.47113 * 300.00580 * 25 2 1 28 28 F 1.39901 * 109.46959 * 60.00151 * 25 2 1 29 29 H 1.08997 * 109.47164 * 299.99568 * 1 2 3 30 30 H 1.08997 * 109.47100 * 60.00354 * 1 2 3 31 31 H 1.09004 * 109.46824 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47176 * 304.99596 * 4 2 1 33 33 H 1.09011 * 109.46868 * 185.00076 * 4 2 1 34 34 H 0.97001 * 119.99996 * 5.00501 * 7 5 4 35 35 H 1.08998 * 109.47555 * 175.00278 * 10 8 7 36 36 H 1.09000 * 109.47541 * 295.00561 * 10 8 7 37 37 H 0.97002 * 119.99570 * 0.02562 * 11 10 8 38 38 H 0.96995 * 119.99831 * 179.97438 * 15 14 12 39 39 H 1.09004 * 110.01855 * 301.98096 * 20 8 7 40 40 H 1.09006 * 110.48246 * 335.78417 * 21 20 8 41 41 H 1.09001 * 110.48836 * 98.41995 * 21 20 8 42 42 H 1.09000 * 110.75462 * 279.62666 * 22 21 20 43 43 H 1.09001 * 110.76114 * 156.25475 * 22 21 20 44 44 H 1.09003 * 110.48485 * 203.38252 * 23 22 21 45 45 H 1.08999 * 110.60077 * 80.79353 * 23 22 21 46 46 H 1.08996 * 110.02950 * 238.56968 * 24 20 8 47 47 H 1.09000 * 110.03026 * 359.94570 * 24 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4766 6 8 1.0111 1.0870 -2.3632 7 7 1.9854 -0.3913 -3.7001 8 6 1.6891 0.4161 -4.8861 9 1 0.7563 0.9585 -4.7326 10 6 1.5526 -0.4989 -6.1047 11 7 0.5462 -1.5280 -5.8324 12 6 0.2511 -2.4664 -6.7851 13 1 0.7607 -2.4480 -7.7371 14 6 -0.7021 -3.4419 -6.5268 15 7 -1.3227 -3.4646 -5.3663 16 14 -1.1050 -4.7215 -7.8266 17 1 -0.2151 -5.8980 -7.6557 18 1 -2.5205 -5.1461 -7.6812 19 1 -0.8997 -4.1375 -9.1765 20 6 2.8259 1.4127 -5.1215 21 6 2.5205 2.2796 -6.3606 22 6 3.8999 2.4732 -7.0380 23 6 4.5767 1.0948 -6.8354 24 6 4.1333 0.6595 -5.4235 25 6 2.0400 -0.7213 1.2493 26 9 3.4390 -0.7218 1.2490 27 9 1.5736 -0.0618 2.3915 28 9 1.5737 -2.0403 1.2492 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 3.1264 -0.7994 -1.2056 34 1 2.4255 -1.2504 -3.7958 35 1 1.2452 0.0902 -6.9688 36 1 2.5114 -0.9742 -6.3116 37 1 0.0882 -1.5443 -4.9774 38 1 -1.9890 -4.1460 -5.1860 39 1 2.9542 2.0465 -4.2440 40 1 1.8360 1.7594 -7.0307 41 1 2.1045 3.2413 -6.0602 42 1 4.4677 3.2593 -6.5402 43 1 3.7817 2.6933 -8.0990 44 1 5.6614 1.1920 -6.8816 45 1 4.2264 0.3821 -7.5820 46 1 4.8962 0.9284 -4.6930 47 1 3.9582 -0.4161 -5.4014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754650534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:59 Heat of formation + Delta-G solvation = -206.916265 kcal Electronic energy + Delta-G solvation = -30729.787087 eV Core-core repulsion = 26110.618483 eV Total energy + Delta-G solvation = -4619.168604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.20549 -47.70105 -47.65010 -40.10003 -38.44747 -35.51320 -34.81681 -33.59641 -31.30592 -29.84400 -28.62681 -27.91337 -26.37983 -26.11159 -23.40736 -22.11812 -21.51022 -20.68586 -20.08994 -18.79807 -18.67299 -18.43789 -17.63543 -17.19936 -16.46983 -15.88492 -15.66999 -15.58656 -15.04665 -14.63716 -14.49869 -14.43979 -14.11257 -13.91881 -13.83441 -13.76490 -13.71621 -13.48322 -13.31870 -13.08624 -13.03212 -12.53149 -12.33917 -12.01861 -11.57470 -11.46557 -11.42679 -11.32792 -11.17364 -11.02436 -10.94624 -10.90335 -10.87663 -10.57389 -10.43647 -10.24743 -9.96089 -9.77910 -9.60660 -8.93046 -8.67353 -6.98517 -5.82019 -3.11547 2.61048 2.81114 3.31075 3.39700 3.45349 3.46975 3.74957 3.96937 3.97538 4.52673 4.58407 4.70516 4.74366 4.74987 4.83278 5.00017 5.17739 5.37570 5.39213 5.42572 5.49799 5.50650 5.54873 5.61312 5.72889 5.75537 5.76983 5.85584 5.87521 5.93836 6.00835 6.07200 6.16487 6.26552 6.26928 6.27278 6.42143 6.48175 6.55592 6.71694 6.92294 7.64441 7.77095 8.36004 8.43733 9.48011 10.03801 10.38978 11.40313 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.008048 B = 0.003948 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3478.253379 B = 7090.287352 C = 9752.016844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.114 4.114 3 H 0.120 0.880 4 C -0.147 4.147 5 C 0.523 3.477 6 O -0.545 6.545 7 N -0.707 5.707 8 C 0.143 3.857 9 H 0.089 0.911 10 C 0.143 3.857 11 N -0.731 5.731 12 C -0.243 4.243 13 H 0.070 0.930 14 C -0.011 4.011 15 N -0.931 5.931 16 Si 0.906 3.094 17 H -0.290 1.290 18 H -0.291 1.291 19 H -0.282 1.282 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.120 4.120 25 C 0.452 3.548 26 F -0.186 7.186 27 F -0.184 7.184 28 F -0.181 7.181 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.405 0.595 35 H 0.035 0.965 36 H 0.029 0.971 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.334 9.437 8.433 16.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.134 4.134 3 H 0.138 0.862 4 C -0.187 4.187 5 C 0.309 3.691 6 O -0.423 6.423 7 N -0.356 5.356 8 C 0.038 3.962 9 H 0.107 0.893 10 C 0.015 3.985 11 N -0.376 5.376 12 C -0.374 4.374 13 H 0.088 0.912 14 C -0.207 4.207 15 N -0.579 5.579 16 Si 0.737 3.263 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.208 1.208 20 C -0.117 4.117 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.162 4.162 24 C -0.158 4.158 25 C 0.398 3.602 26 F -0.168 7.168 27 F -0.165 7.165 28 F -0.162 7.162 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.121 0.879 34 H 0.240 0.760 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.894 10.055 8.382 17.031 hybrid contribution -0.068 -1.399 -0.174 1.412 sum 10.826 8.656 8.208 16.109 Atomic orbital electron populations 1.22019 0.90732 1.03804 1.05122 1.22138 1.00508 1.01317 0.89398 0.86211 1.21723 1.03597 1.01367 0.91987 1.20072 0.79011 0.85482 0.84506 1.90653 1.39723 1.25304 1.86613 1.45916 1.60902 1.23255 1.05565 1.21262 0.97930 0.92040 0.84929 0.89343 1.21081 0.93485 0.90277 0.93646 1.42357 1.45385 1.31740 1.18137 1.19195 1.17415 1.05139 0.95615 0.91205 1.24732 0.99309 0.99524 0.97127 1.69657 1.29434 1.36553 1.22246 0.86212 0.77405 0.81743 0.80933 1.21719 1.21773 1.20763 1.22099 0.94808 0.96318 0.98427 1.22502 0.97493 0.99434 0.96673 1.22459 0.96255 0.97158 1.00130 1.22357 0.99454 0.96996 0.97359 1.22230 0.96282 1.00833 0.96437 1.20712 0.75247 0.77892 0.86347 1.93168 1.30325 1.96460 1.96827 1.93167 1.88476 1.80799 1.54062 1.93188 1.88394 1.37810 1.96807 0.91686 0.88084 0.91508 0.87192 0.87907 0.76028 0.94763 0.95309 0.78071 0.93471 0.91079 0.90334 0.91903 0.92016 0.91813 0.92290 0.91340 0.92581 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.69 37.16 0.32 -1.59 16 2 C -0.11 -1.26 2.01 -90.62 -0.18 -1.44 16 3 H 0.12 1.28 7.96 -51.93 -0.41 0.86 16 4 C -0.15 -1.65 4.93 -27.89 -0.14 -1.79 16 5 C 0.52 7.48 7.52 -10.98 -0.08 7.39 16 6 O -0.54 -9.17 13.58 5.56 0.08 -9.09 16 7 N -0.71 -10.20 4.05 -53.81 -0.22 -10.42 16 8 C 0.14 2.23 1.94 -67.93 -0.13 2.10 16 9 H 0.09 1.60 7.48 -51.93 -0.39 1.21 16 10 C 0.14 2.61 5.26 -4.04 -0.02 2.59 16 11 N -0.73 -17.32 5.43 -59.91 -0.33 -17.64 16 12 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 13 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 14 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 15 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 16 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.10 -1.24 2.95 -89.50 -0.26 -1.51 16 21 C -0.12 -1.49 6.19 -25.07 -0.16 -1.65 16 22 C -0.12 -1.28 6.91 -24.74 -0.17 -1.45 16 23 C -0.12 -1.34 6.83 -25.07 -0.17 -1.52 16 24 C -0.12 -1.40 5.62 -25.61 -0.14 -1.54 16 25 C 0.45 5.04 2.69 37.16 0.10 5.14 16 26 F -0.19 -2.08 16.71 2.25 0.04 -2.04 16 27 F -0.18 -2.12 16.80 2.25 0.04 -2.08 16 28 F -0.18 -2.19 16.37 2.25 0.04 -2.15 16 29 H 0.06 0.69 7.80 -51.93 -0.41 0.29 16 30 H 0.10 1.43 5.95 -51.93 -0.31 1.12 16 31 H 0.07 0.80 7.80 -51.93 -0.41 0.40 16 32 H 0.11 1.24 7.94 -51.93 -0.41 0.83 16 33 H 0.10 0.95 7.66 -51.92 -0.40 0.55 16 34 H 0.40 5.58 8.54 -40.82 -0.35 5.23 16 35 H 0.03 0.65 6.29 -51.93 -0.33 0.32 16 36 H 0.03 0.52 6.13 -51.93 -0.32 0.20 16 37 H 0.39 9.77 7.33 -40.82 -0.30 9.47 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.04 5.85 -51.93 -0.30 0.74 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.90 5.86 -51.93 -0.30 0.59 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -29.82 379.65 -7.36 -37.18 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -7.14 Total: 12.59 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.28 Total: -2.29 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.18 Total: -54.65 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.11 Total: -6.27 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.82 -7.36 -37.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754650534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.736 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds