Wall clock time and date at job start Sat Apr 11 2020 04:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46856 * 2 1 4 4 C 1.52996 * 109.47012 * 240.00213 * 2 1 3 5 5 C 1.50698 * 109.47255 * 65.00345 * 4 2 1 6 6 O 1.21276 * 119.99941 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99945 * 179.97438 * 5 4 2 8 8 C 1.46496 * 119.99749 * 184.72238 * 7 5 4 9 9 H 1.08994 * 109.47407 * 326.20858 * 8 7 5 10 10 C 1.52997 * 109.47051 * 206.20162 * 8 7 5 11 11 N 1.46499 * 109.47185 * 55.00314 * 10 8 7 12 12 C 1.36936 * 120.00401 * 179.97438 * 11 10 8 13 13 H 1.08001 * 119.99745 * 0.02562 * 12 11 10 14 14 C 1.38813 * 120.00271 * 179.97438 * 12 11 10 15 15 N 1.31618 * 119.99890 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00205 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47005 * 89.99962 * 16 14 12 18 18 H 1.48497 * 109.47481 * 210.00317 * 16 14 12 19 19 H 1.48505 * 109.47110 * 330.00285 * 16 14 12 20 20 C 1.52998 * 109.46693 * 86.20733 * 8 7 5 21 21 C 1.54269 * 110.03314 * 180.54310 * 20 8 7 22 22 C 1.54887 * 104.19847 * 217.10695 * 21 20 8 23 23 C 1.54891 * 102.74936 * 37.93940 * 22 21 20 24 24 C 1.53876 * 110.03713 * 63.37832 * 20 8 7 25 25 C 1.53003 * 109.47053 * 119.99983 * 2 1 3 26 26 F 1.39900 * 109.47087 * 179.97438 * 25 2 1 27 27 F 1.39899 * 109.47113 * 300.00580 * 25 2 1 28 28 F 1.39901 * 109.46959 * 60.00151 * 25 2 1 29 29 H 1.08997 * 109.47164 * 299.99568 * 1 2 3 30 30 H 1.08997 * 109.47100 * 60.00354 * 1 2 3 31 31 H 1.09004 * 109.46824 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47176 * 304.99596 * 4 2 1 33 33 H 1.09011 * 109.46868 * 185.00076 * 4 2 1 34 34 H 0.97001 * 119.99996 * 5.00501 * 7 5 4 35 35 H 1.08998 * 109.47555 * 175.00278 * 10 8 7 36 36 H 1.09000 * 109.47541 * 295.00561 * 10 8 7 37 37 H 0.97002 * 119.99570 * 0.02562 * 11 10 8 38 38 H 0.96995 * 119.99831 * 179.97438 * 15 14 12 39 39 H 1.09004 * 110.01855 * 301.98096 * 20 8 7 40 40 H 1.09006 * 110.48246 * 335.78417 * 21 20 8 41 41 H 1.09001 * 110.48836 * 98.41995 * 21 20 8 42 42 H 1.09000 * 110.75462 * 279.62666 * 22 21 20 43 43 H 1.09001 * 110.76114 * 156.25475 * 22 21 20 44 44 H 1.09003 * 110.48485 * 203.38252 * 23 22 21 45 45 H 1.08999 * 110.60077 * 80.79353 * 23 22 21 46 46 H 1.08996 * 110.02950 * 238.56968 * 24 20 8 47 47 H 1.09000 * 110.03026 * 359.94570 * 24 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4766 6 8 1.0111 1.0870 -2.3632 7 7 1.9854 -0.3913 -3.7001 8 6 1.6891 0.4161 -4.8861 9 1 0.7563 0.9585 -4.7326 10 6 1.5526 -0.4989 -6.1047 11 7 0.5462 -1.5280 -5.8324 12 6 0.2511 -2.4664 -6.7851 13 1 0.7607 -2.4480 -7.7371 14 6 -0.7021 -3.4419 -6.5268 15 7 -1.3227 -3.4646 -5.3663 16 14 -1.1050 -4.7215 -7.8266 17 1 -0.2151 -5.8980 -7.6557 18 1 -2.5205 -5.1461 -7.6812 19 1 -0.8997 -4.1375 -9.1765 20 6 2.8259 1.4127 -5.1215 21 6 2.5205 2.2796 -6.3606 22 6 3.8999 2.4732 -7.0380 23 6 4.5767 1.0948 -6.8354 24 6 4.1333 0.6595 -5.4235 25 6 2.0400 -0.7213 1.2493 26 9 3.4390 -0.7218 1.2490 27 9 1.5736 -0.0618 2.3915 28 9 1.5737 -2.0403 1.2492 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 3.1264 -0.7994 -1.2056 34 1 2.4255 -1.2504 -3.7958 35 1 1.2452 0.0902 -6.9688 36 1 2.5114 -0.9742 -6.3116 37 1 0.0882 -1.5443 -4.9774 38 1 -1.9890 -4.1460 -5.1860 39 1 2.9542 2.0465 -4.2440 40 1 1.8360 1.7594 -7.0307 41 1 2.1045 3.2413 -6.0602 42 1 4.4677 3.2593 -6.5402 43 1 3.7817 2.6933 -8.0990 44 1 5.6614 1.1920 -6.8816 45 1 4.2264 0.3821 -7.5820 46 1 4.8962 0.9284 -4.6930 47 1 3.9582 -0.4161 -5.4014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754650534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:58 Heat of formation + Delta-G solvation = -223.711392 kcal Electronic energy + Delta-G solvation = -30730.515378 eV Core-core repulsion = 26110.618483 eV Total energy + Delta-G solvation = -4619.896896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.12061 -48.60454 -48.57807 -41.27941 -39.53565 -36.80643 -36.01428 -35.15617 -33.01669 -31.21734 -29.56465 -28.89782 -27.74781 -27.25523 -25.07258 -23.50087 -22.59587 -21.63409 -21.14783 -19.98405 -19.63526 -19.37098 -19.05615 -18.60467 -17.65286 -17.09917 -16.82309 -16.68219 -16.29539 -16.01301 -15.55966 -15.44208 -15.15807 -15.06794 -15.02141 -14.94224 -14.76783 -14.71683 -14.49832 -14.38139 -14.06457 -13.89302 -13.55057 -13.21848 -13.04573 -12.78135 -12.66720 -12.43833 -12.36686 -12.27278 -12.19803 -12.08844 -11.90063 -11.85554 -11.79897 -11.66343 -11.34176 -11.21719 -10.92216 -10.76344 -9.90501 -8.96943 -7.93216 -5.21805 1.49085 1.49828 1.58069 1.63563 1.69775 2.22915 2.56947 2.81533 3.02046 3.06136 3.41512 3.61540 3.66265 3.74548 3.78048 3.86366 3.97934 4.10777 4.22993 4.25831 4.41235 4.51166 4.55182 4.56882 4.61893 4.73214 4.74861 4.79236 4.88429 4.91827 4.94560 4.95692 5.12418 5.14837 5.20460 5.25051 5.31769 5.40332 5.51934 5.52770 5.57964 5.66908 6.27974 6.59715 7.27738 7.35663 8.09682 8.33345 9.29764 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.008048 B = 0.003948 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3478.253379 B = 7090.287352 C = 9752.016844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 H 0.127 0.873 4 C -0.140 4.140 5 C 0.521 3.479 6 O -0.572 6.572 7 N -0.706 5.706 8 C 0.154 3.846 9 H 0.058 0.942 10 C 0.147 3.853 11 N -0.742 5.742 12 C -0.241 4.241 13 H 0.077 0.923 14 C -0.071 4.071 15 N -0.967 5.967 16 Si 0.968 3.032 17 H -0.286 1.286 18 H -0.300 1.300 19 H -0.271 1.271 20 C -0.087 4.087 21 C -0.126 4.126 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.117 4.117 25 C 0.459 3.541 26 F -0.183 7.183 27 F -0.185 7.185 28 F -0.186 7.186 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.111 0.889 33 H 0.130 0.870 34 H 0.409 0.591 35 H 0.033 0.967 36 H 0.043 0.957 37 H 0.374 0.626 38 H 0.250 0.750 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.070 0.930 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.323 9.711 8.082 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.129 4.129 3 H 0.145 0.855 4 C -0.180 4.180 5 C 0.308 3.692 6 O -0.452 6.452 7 N -0.356 5.356 8 C 0.049 3.951 9 H 0.077 0.923 10 C 0.021 3.979 11 N -0.385 5.385 12 C -0.373 4.373 13 H 0.095 0.905 14 C -0.263 4.263 15 N -0.618 5.618 16 Si 0.798 3.202 17 H -0.213 1.213 18 H -0.227 1.227 19 H -0.196 1.196 20 C -0.108 4.108 21 C -0.164 4.164 22 C -0.154 4.154 23 C -0.161 4.161 24 C -0.154 4.154 25 C 0.405 3.595 26 F -0.165 7.165 27 F -0.166 7.166 28 F -0.168 7.168 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.129 0.871 33 H 0.148 0.852 34 H 0.245 0.755 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.206 0.794 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.929 10.346 8.005 18.392 hybrid contribution -0.674 -1.411 -0.069 1.565 sum 12.255 8.935 7.936 17.117 Atomic orbital electron populations 1.21946 0.91595 1.03352 1.04534 1.22081 0.99749 1.01718 0.89332 0.85520 1.21719 1.05256 1.00640 0.90377 1.20559 0.78259 0.85287 0.85086 1.90646 1.40874 1.26721 1.87005 1.45899 1.60857 1.23357 1.05453 1.21020 0.97966 0.91786 0.84334 0.92339 1.21179 0.92430 0.89451 0.94868 1.42525 1.46340 1.32448 1.17183 1.19589 1.16527 1.05064 0.96133 0.90534 1.25480 0.99941 1.01861 0.99031 1.69811 1.30379 1.37409 1.24152 0.85216 0.76443 0.79435 0.79108 1.21295 1.22687 1.19563 1.22010 0.94395 0.95657 0.98700 1.22513 0.98508 0.99220 0.96157 1.22445 0.94925 0.97389 1.00607 1.22361 1.00584 0.96828 0.96299 1.22199 0.95693 0.99970 0.97538 1.20576 0.75272 0.77511 0.86112 1.93175 1.30064 1.96425 1.96805 1.93167 1.88521 1.80799 1.54126 1.93182 1.88496 1.38256 1.96820 0.90493 0.90401 0.91888 0.87088 0.85245 0.75522 0.94910 0.93928 0.79382 0.94159 0.91399 0.91826 0.91571 0.90726 0.90971 0.90506 0.92286 0.91164 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 8.69 71.98 0.63 -3.12 16 2 C -0.11 -2.30 2.01 -10.79 -0.02 -2.32 16 3 H 0.13 2.54 7.96 -2.38 -0.02 2.52 16 4 C -0.14 -3.00 4.93 29.85 0.15 -2.86 16 5 C 0.52 14.79 7.52 87.66 0.66 15.45 16 6 O -0.57 -19.55 13.58 -3.02 -0.04 -19.59 16 7 N -0.71 -20.27 4.05 -442.56 -1.79 -22.07 16 8 C 0.15 4.82 1.94 44.99 0.09 4.91 16 9 H 0.06 2.20 7.48 -2.39 -0.02 2.18 16 10 C 0.15 5.36 5.26 86.38 0.45 5.81 16 11 N -0.74 -35.44 5.43 -343.46 -1.87 -37.31 16 12 C -0.24 -12.85 9.99 84.03 0.84 -12.01 16 13 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 14 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 15 N -0.97 -57.71 13.06 21.65 0.28 -57.43 16 16 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 17 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 C -0.09 -2.17 2.95 -10.07 -0.03 -2.20 16 21 C -0.13 -2.92 6.19 31.67 0.20 -2.73 16 22 C -0.12 -2.16 6.91 31.89 0.22 -1.94 16 23 C -0.12 -2.36 6.83 31.67 0.22 -2.15 16 24 C -0.12 -2.47 5.62 31.32 0.18 -2.29 16 25 C 0.46 9.55 2.69 71.98 0.19 9.74 16 26 F -0.18 -3.71 16.71 44.97 0.75 -2.96 16 27 F -0.18 -4.00 16.80 44.97 0.76 -3.24 16 28 F -0.19 -4.28 16.37 44.97 0.74 -3.54 16 29 H 0.08 1.61 7.80 -2.39 -0.02 1.59 16 30 H 0.08 2.26 5.95 -2.39 -0.01 2.25 16 31 H 0.06 1.52 7.80 -2.38 -0.02 1.50 16 32 H 0.11 2.42 7.94 -2.39 -0.02 2.40 16 33 H 0.13 2.09 7.66 -2.38 -0.02 2.07 16 34 H 0.41 11.06 8.54 -92.71 -0.79 10.27 16 35 H 0.03 1.24 6.29 -2.39 -0.02 1.22 16 36 H 0.04 1.48 6.13 -2.39 -0.01 1.46 16 37 H 0.37 19.42 7.33 -92.71 -0.68 18.74 16 38 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.06 1.66 5.85 -2.38 -0.01 1.65 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.06 1.46 5.86 -2.39 -0.01 1.44 16 Total: -1.00 -63.62 379.65 4.62 -59.00 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: -0.46 Total: 39.31 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 4.23 Total: 0.83 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -3.38 Total: -116.80 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.04 Total: -19.59 kcal Atomic # 9 Polarization: -11.99 SS G_CDS: 2.24 Total: -9.75 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -63.62 4.62 -59.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754650534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.706 kcal (2) G-P(sol) polarization free energy of solvation -63.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds