Wall clock time and date at job start Sat Apr 11 2020 04:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46711 * 2 1 4 4 C 1.52995 * 109.47336 * 239.99854 * 2 1 3 5 5 C 1.53001 * 109.46925 * 66.15177 * 4 2 1 6 6 F 1.39897 * 109.47062 * 53.18017 * 5 4 2 7 7 F 1.39891 * 109.47282 * 293.17253 * 5 4 2 8 8 F 1.39909 * 109.47025 * 173.17145 * 5 4 2 9 9 C 1.50704 * 109.47312 * 119.99571 * 2 1 3 10 10 O 1.21275 * 119.99852 * 120.00366 * 9 2 1 11 11 N 1.34773 * 119.99944 * 300.00231 * 9 2 1 12 12 C 1.46501 * 119.99846 * 179.97438 * 11 9 2 13 13 C 1.53001 * 109.46864 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.49894 * 60.06546 * 13 12 11 15 15 C 1.53042 * 109.49671 * 180.16029 * 13 12 11 16 16 C 1.53040 * 109.53972 * 181.31696 * 15 13 12 17 17 C 1.53184 * 109.31097 * 298.63642 * 16 15 13 18 18 N 1.46926 * 108.77924 * 54.63341 * 17 16 15 19 19 C 1.36936 * 120.62729 * 126.40669 * 18 17 16 20 20 H 1.07999 * 120.00742 * 331.72531 * 19 18 17 21 21 C 1.38825 * 119.99440 * 151.72082 * 19 18 17 22 22 N 1.31611 * 119.99949 * 344.79775 * 21 19 18 23 23 Si 1.86800 * 119.99682 * 164.78904 * 21 19 18 24 24 H 1.48507 * 109.46868 * 90.00482 * 23 21 19 25 25 H 1.48496 * 109.47025 * 210.00363 * 23 21 19 26 26 H 1.48500 * 109.47325 * 330.00838 * 23 21 19 27 27 C 1.46917 * 118.73817 * 306.39310 * 18 17 16 28 28 H 1.09004 * 109.46688 * 170.76953 * 1 2 3 29 29 H 1.08999 * 109.46861 * 290.76672 * 1 2 3 30 30 H 1.08996 * 109.47142 * 50.76816 * 1 2 3 31 31 H 1.08997 * 109.47127 * 306.15241 * 4 2 1 32 32 H 1.08995 * 109.47432 * 186.15215 * 4 2 1 33 33 H 0.96999 * 120.00316 * 359.97438 * 11 9 2 34 34 H 1.08996 * 109.46738 * 299.99594 * 12 11 9 35 35 H 1.08998 * 109.47242 * 60.00376 * 12 11 9 36 36 H 1.09007 * 109.47323 * 59.99504 * 14 13 12 37 37 H 1.08998 * 109.47262 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.47463 * 299.99784 * 14 13 12 39 39 H 1.09002 * 109.46201 * 301.33853 * 15 13 12 40 40 H 1.08997 * 109.45798 * 61.29288 * 15 13 12 41 41 H 1.09005 * 109.49737 * 178.68429 * 16 15 13 42 42 H 1.09002 * 109.49460 * 58.59036 * 16 15 13 43 43 H 1.09005 * 109.58935 * 294.84156 * 17 16 15 44 44 H 1.09006 * 109.58554 * 174.42582 * 17 16 15 45 45 H 0.97001 * 120.00013 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.58733 * 293.81519 * 27 18 17 47 47 H 1.09005 * 109.58997 * 173.39257 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6602 0.0837 -2.4936 6 9 2.1060 1.4020 -2.3503 7 9 0.2698 0.0757 -2.6477 8 9 2.2577 -0.4906 -3.6208 9 6 2.0324 -0.7103 1.2305 10 8 2.7297 -1.6963 1.1193 11 7 1.7068 -0.2498 2.4546 12 6 2.1947 -0.9407 3.6508 13 6 1.6853 -0.2189 4.9000 14 6 0.1554 -0.2188 4.9015 15 6 2.1980 -0.9378 6.1500 16 6 1.6621 -0.2360 7.4000 17 6 2.1732 1.2078 7.4287 18 7 1.8089 1.8637 6.1655 19 6 1.1212 3.0479 6.1673 20 1 0.4594 3.2869 6.9866 21 6 1.2749 3.9413 5.1160 22 7 2.2822 3.8064 4.2797 23 14 0.0520 5.3349 4.8882 24 1 0.5146 6.5276 5.6425 25 1 -0.0521 5.6712 3.4456 26 1 -1.2786 4.9137 5.3956 27 6 2.1966 1.2252 4.9005 28 1 -0.3633 -1.0144 -0.1649 29 1 -0.3633 0.3644 0.9609 30 1 -0.3633 0.6499 -0.7960 31 1 1.5896 -1.7122 -1.3059 32 1 3.1244 -0.8176 -1.1958 33 1 1.1494 0.5390 2.5436 34 1 1.8310 -1.9681 3.6506 35 1 3.2847 -0.9410 3.6510 36 1 -0.2081 -1.2465 4.9023 37 1 -0.2071 0.2950 5.7918 38 1 -0.2089 0.2946 4.0117 39 1 1.8559 -1.9726 6.1398 40 1 3.2877 -0.9159 6.1602 41 1 2.0085 -0.7624 8.2894 42 1 0.5723 -0.2359 7.3781 43 1 3.2573 1.2095 7.5420 44 1 1.7159 1.7408 8.2625 45 1 2.3898 4.4309 3.5453 46 1 3.2827 1.2283 4.8074 47 1 1.7548 1.7695 4.0658 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754736960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:03 Heat of formation + Delta-G solvation = -191.984028 kcal Electronic energy + Delta-G solvation = -31169.813472 eV Core-core repulsion = 26551.292378 eV Total energy + Delta-G solvation = -4618.521094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.26959 -47.76844 -47.71152 -40.00410 -38.47660 -35.13121 -34.77587 -33.25330 -31.44493 -29.94811 -29.18159 -26.62459 -25.89114 -25.35448 -24.60267 -22.65633 -22.05251 -20.56654 -19.93360 -18.77461 -18.68991 -17.93588 -17.64902 -16.79619 -16.37526 -15.77188 -15.50679 -14.98688 -14.78552 -14.61608 -14.27805 -14.18930 -14.02360 -13.94465 -13.92972 -13.84354 -13.58370 -13.46099 -13.19759 -13.01261 -12.76955 -12.35805 -12.26068 -12.23882 -11.77295 -11.68585 -11.52821 -11.38247 -11.34990 -10.99828 -10.89651 -10.68946 -10.45180 -10.23412 -10.14268 -9.87903 -9.76873 -9.52953 -9.42618 -8.78186 -8.54401 -6.70912 -5.85574 -3.28761 2.57610 2.74026 3.28709 3.30935 3.39356 3.40446 3.72924 3.89440 3.92508 4.42582 4.50855 4.68002 4.82832 5.06771 5.13751 5.24918 5.33683 5.39076 5.43387 5.47149 5.54318 5.57960 5.73063 5.74876 5.92002 5.99471 6.01046 6.04786 6.12606 6.21328 6.36920 6.39763 6.50034 6.57117 6.69887 6.79112 6.83789 6.92502 7.00420 7.24672 7.53617 7.71349 7.72311 8.34888 8.37921 9.14825 9.77609 10.35076 11.22219 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.003610 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.804665 B = 7753.366831 C = 9369.785647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 H 0.114 0.886 4 C -0.146 4.146 5 C 0.452 3.548 6 F -0.181 7.181 7 F -0.182 7.182 8 F -0.185 7.185 9 C 0.523 3.477 10 O -0.552 6.552 11 N -0.711 5.711 12 C 0.136 3.864 13 C -0.104 4.104 14 C -0.125 4.125 15 C -0.095 4.095 16 C -0.135 4.135 17 C 0.143 3.857 18 N -0.589 5.589 19 C -0.249 4.249 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.904 5.904 23 Si 0.898 3.102 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.185 3.815 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.408 0.592 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.016 0.984 44 H 0.052 0.948 45 H 0.254 0.746 46 H 0.017 0.983 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 -9.728 -8.430 13.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.139 4.139 3 H 0.132 0.868 4 C -0.184 4.184 5 C 0.398 3.602 6 F -0.163 7.163 7 F -0.163 7.163 8 F -0.167 7.167 9 C 0.308 3.692 10 O -0.431 6.431 11 N -0.362 5.362 12 C 0.012 3.988 13 C -0.106 4.106 14 C -0.183 4.183 15 C -0.133 4.133 16 C -0.174 4.174 17 C 0.016 3.984 18 N -0.311 5.311 19 C -0.378 4.378 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.548 5.548 23 Si 0.728 3.272 24 H -0.214 1.214 25 H -0.215 1.215 26 H -0.205 1.205 27 C 0.059 3.941 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.244 0.756 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.461 -10.274 -8.639 13.647 hybrid contribution -0.790 1.342 -0.334 1.593 sum -3.251 -8.931 -8.973 13.071 Atomic orbital electron populations 1.22074 0.91837 1.03515 1.04051 1.21285 0.98647 1.01801 0.92193 0.86795 1.22690 1.06401 1.00068 0.89269 1.20610 0.74598 0.78914 0.86042 1.93199 1.89111 1.38201 1.95773 1.93155 1.30534 1.96449 1.96177 1.93187 1.83680 1.84472 1.55346 1.20093 0.80181 0.84371 0.84554 1.90679 1.38636 1.26744 1.86995 1.46043 1.52916 1.31976 1.05303 1.21400 0.98918 0.95126 0.83340 1.21558 0.96481 1.00061 0.92496 1.21718 0.94505 0.99487 1.02555 1.21343 0.99942 0.97473 0.94544 1.22045 1.00978 0.98247 0.96146 1.20937 0.96376 0.91021 0.90026 1.43977 1.65296 1.22452 0.99371 1.19174 1.17689 0.93920 1.07062 0.91769 1.25024 0.97110 0.97375 0.99988 1.70005 1.28414 1.38178 1.18250 0.86367 0.81229 0.82499 0.77125 1.21414 1.21536 1.20507 1.20815 0.96199 0.86489 0.90620 0.91545 0.91108 0.90427 0.86656 0.86333 0.75554 0.92235 0.91789 0.94545 0.90963 0.93711 0.93420 0.92578 0.93211 0.91961 0.96568 0.92946 0.93630 0.96504 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.32 37.16 0.31 -1.28 16 2 C -0.12 -1.35 2.62 -91.77 -0.24 -1.59 16 3 H 0.11 1.30 7.45 -51.93 -0.39 0.91 16 4 C -0.15 -1.49 4.20 -26.73 -0.11 -1.60 16 5 C 0.45 4.74 3.12 37.16 0.12 4.86 16 6 F -0.18 -2.13 16.42 2.25 0.04 -2.09 16 7 F -0.18 -1.92 14.49 2.25 0.03 -1.89 16 8 F -0.19 -2.02 17.32 2.25 0.04 -1.99 16 9 C 0.52 7.56 7.15 -10.99 -0.08 7.48 16 10 O -0.55 -9.44 15.89 5.56 0.09 -9.35 16 11 N -0.71 -10.58 4.82 -60.30 -0.29 -10.87 16 12 C 0.14 2.13 4.57 -4.04 -0.02 2.11 16 13 C -0.10 -1.74 0.53 -154.39 -0.08 -1.82 16 14 C -0.13 -2.02 7.81 37.16 0.29 -1.73 16 15 C -0.09 -1.48 4.71 -26.69 -0.13 -1.61 16 16 C -0.14 -2.18 5.74 -26.62 -0.15 -2.33 16 17 C 0.14 2.82 6.51 -3.71 -0.02 2.80 16 18 N -0.59 -13.57 2.43 -172.32 -0.42 -13.99 16 19 C -0.25 -6.36 9.59 -15.05 -0.14 -6.50 16 20 H 0.06 1.63 7.87 -52.49 -0.41 1.22 16 21 C 0.00 0.09 4.96 -17.43 -0.09 0.00 16 22 N -0.90 -24.41 11.09 55.49 0.62 -23.79 16 23 Si 0.90 20.51 29.58 -169.99 -5.03 15.48 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 C 0.19 3.95 3.71 -3.72 -0.01 3.94 16 28 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.07 0.72 7.32 -51.93 -0.38 0.34 16 30 H 0.08 0.75 6.19 -51.93 -0.32 0.43 16 31 H 0.12 1.08 8.10 -51.93 -0.42 0.66 16 32 H 0.12 1.23 7.91 -51.93 -0.41 0.82 16 33 H 0.41 6.07 5.56 -40.82 -0.23 5.85 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.07 1.30 5.97 -51.93 -0.31 0.99 16 38 H 0.04 0.71 6.87 -51.93 -0.36 0.35 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.02 6.34 -51.93 -0.33 0.69 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 45 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 2.09 4.91 -51.93 -0.25 1.84 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -28.37 370.90 -6.86 -35.23 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.16 Total: 4.94 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -0.36 Total: 2.72 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.09 Total: -48.65 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.11 Total: -5.96 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.37 -6.86 -35.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754736960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.755 kcal (2) G-P(sol) polarization free energy of solvation -28.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds