Wall clock time and date at job start Sat Apr 11 2020 04:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46711 * 2 1 4 4 C 1.52995 * 109.47336 * 239.99854 * 2 1 3 5 5 C 1.53001 * 109.46925 * 66.15177 * 4 2 1 6 6 F 1.39897 * 109.47062 * 53.18017 * 5 4 2 7 7 F 1.39891 * 109.47282 * 293.17253 * 5 4 2 8 8 F 1.39909 * 109.47025 * 173.17145 * 5 4 2 9 9 C 1.50704 * 109.47312 * 119.99571 * 2 1 3 10 10 O 1.21275 * 119.99852 * 120.00366 * 9 2 1 11 11 N 1.34773 * 119.99944 * 300.00231 * 9 2 1 12 12 C 1.46501 * 119.99846 * 179.97438 * 11 9 2 13 13 C 1.53001 * 109.46864 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.49894 * 60.06546 * 13 12 11 15 15 C 1.53042 * 109.49671 * 180.16029 * 13 12 11 16 16 C 1.53040 * 109.53972 * 181.31696 * 15 13 12 17 17 C 1.53184 * 109.31097 * 298.63642 * 16 15 13 18 18 N 1.46926 * 108.77924 * 54.63341 * 17 16 15 19 19 C 1.36936 * 120.62729 * 126.40669 * 18 17 16 20 20 H 1.07999 * 120.00742 * 331.72531 * 19 18 17 21 21 C 1.38825 * 119.99440 * 151.72082 * 19 18 17 22 22 N 1.31611 * 119.99949 * 344.79775 * 21 19 18 23 23 Si 1.86800 * 119.99682 * 164.78904 * 21 19 18 24 24 H 1.48507 * 109.46868 * 90.00482 * 23 21 19 25 25 H 1.48496 * 109.47025 * 210.00363 * 23 21 19 26 26 H 1.48500 * 109.47325 * 330.00838 * 23 21 19 27 27 C 1.46917 * 118.73817 * 306.39310 * 18 17 16 28 28 H 1.09004 * 109.46688 * 170.76953 * 1 2 3 29 29 H 1.08999 * 109.46861 * 290.76672 * 1 2 3 30 30 H 1.08996 * 109.47142 * 50.76816 * 1 2 3 31 31 H 1.08997 * 109.47127 * 306.15241 * 4 2 1 32 32 H 1.08995 * 109.47432 * 186.15215 * 4 2 1 33 33 H 0.96999 * 120.00316 * 359.97438 * 11 9 2 34 34 H 1.08996 * 109.46738 * 299.99594 * 12 11 9 35 35 H 1.08998 * 109.47242 * 60.00376 * 12 11 9 36 36 H 1.09007 * 109.47323 * 59.99504 * 14 13 12 37 37 H 1.08998 * 109.47262 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.47463 * 299.99784 * 14 13 12 39 39 H 1.09002 * 109.46201 * 301.33853 * 15 13 12 40 40 H 1.08997 * 109.45798 * 61.29288 * 15 13 12 41 41 H 1.09005 * 109.49737 * 178.68429 * 16 15 13 42 42 H 1.09002 * 109.49460 * 58.59036 * 16 15 13 43 43 H 1.09005 * 109.58935 * 294.84156 * 17 16 15 44 44 H 1.09006 * 109.58554 * 174.42582 * 17 16 15 45 45 H 0.97001 * 120.00013 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.58733 * 293.81519 * 27 18 17 47 47 H 1.09005 * 109.58997 * 173.39257 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6602 0.0837 -2.4936 6 9 2.1060 1.4020 -2.3503 7 9 0.2698 0.0757 -2.6477 8 9 2.2577 -0.4906 -3.6208 9 6 2.0324 -0.7103 1.2305 10 8 2.7297 -1.6963 1.1193 11 7 1.7068 -0.2498 2.4546 12 6 2.1947 -0.9407 3.6508 13 6 1.6853 -0.2189 4.9000 14 6 0.1554 -0.2188 4.9015 15 6 2.1980 -0.9378 6.1500 16 6 1.6621 -0.2360 7.4000 17 6 2.1732 1.2078 7.4287 18 7 1.8089 1.8637 6.1655 19 6 1.1212 3.0479 6.1673 20 1 0.4594 3.2869 6.9866 21 6 1.2749 3.9413 5.1160 22 7 2.2822 3.8064 4.2797 23 14 0.0520 5.3349 4.8882 24 1 0.5146 6.5276 5.6425 25 1 -0.0521 5.6712 3.4456 26 1 -1.2786 4.9137 5.3956 27 6 2.1966 1.2252 4.9005 28 1 -0.3633 -1.0144 -0.1649 29 1 -0.3633 0.3644 0.9609 30 1 -0.3633 0.6499 -0.7960 31 1 1.5896 -1.7122 -1.3059 32 1 3.1244 -0.8176 -1.1958 33 1 1.1494 0.5390 2.5436 34 1 1.8310 -1.9681 3.6506 35 1 3.2847 -0.9410 3.6510 36 1 -0.2081 -1.2465 4.9023 37 1 -0.2071 0.2950 5.7918 38 1 -0.2089 0.2946 4.0117 39 1 1.8559 -1.9726 6.1398 40 1 3.2877 -0.9159 6.1602 41 1 2.0085 -0.7624 8.2894 42 1 0.5723 -0.2359 7.3781 43 1 3.2573 1.2095 7.5420 44 1 1.7159 1.7408 8.2625 45 1 2.3898 4.4309 3.5453 46 1 3.2827 1.2283 4.8074 47 1 1.7548 1.7695 4.0658 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754736960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:02 Heat of formation + Delta-G solvation = -206.741871 kcal Electronic energy + Delta-G solvation = -31170.453421 eV Core-core repulsion = 26551.292378 eV Total energy + Delta-G solvation = -4619.161042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.13543 -48.62336 -48.59477 -41.22519 -39.89120 -36.40780 -35.93862 -34.87958 -32.94979 -31.60791 -30.08824 -27.95787 -27.37658 -26.96733 -25.59859 -23.98005 -23.38370 -22.01074 -21.06897 -19.78934 -19.55326 -19.34454 -18.57882 -18.48182 -17.57145 -17.00617 -16.69785 -16.53275 -15.82407 -15.72507 -15.50396 -15.40639 -15.28694 -15.07703 -14.96948 -14.81835 -14.79785 -14.68673 -14.61700 -14.26206 -13.94548 -13.76587 -13.66470 -13.17009 -13.05113 -12.99300 -12.69860 -12.68068 -12.55255 -12.41873 -12.29893 -12.21689 -12.11885 -11.83616 -11.69660 -11.38526 -11.20929 -10.95379 -10.79092 -10.49459 -10.02600 -8.58763 -7.81537 -5.27175 1.48073 1.51754 1.58267 1.59346 1.69120 2.22602 2.54385 2.85775 2.98462 3.08268 3.31768 3.58048 3.64126 3.80755 3.87283 3.98112 4.06711 4.07390 4.19076 4.38466 4.49592 4.54428 4.58450 4.62084 4.74782 4.77608 4.79261 4.83573 4.90919 5.01657 5.06828 5.14288 5.19605 5.20904 5.31938 5.35651 5.43421 5.49986 5.54694 5.65987 5.75469 5.82334 6.44782 6.50937 7.16598 7.21334 7.91922 8.44213 9.23448 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.003610 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.804665 B = 7753.366831 C = 9369.785647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 H 0.112 0.888 4 C -0.140 4.140 5 C 0.458 3.542 6 F -0.190 7.190 7 F -0.180 7.180 8 F -0.187 7.187 9 C 0.523 3.477 10 O -0.578 6.578 11 N -0.712 5.712 12 C 0.142 3.858 13 C -0.092 4.092 14 C -0.118 4.118 15 C -0.095 4.095 16 C -0.123 4.123 17 C 0.135 3.865 18 N -0.605 5.605 19 C -0.255 4.255 20 H 0.062 0.938 21 C -0.041 4.041 22 N -0.931 5.931 23 Si 0.956 3.044 24 H -0.293 1.293 25 H -0.291 1.291 26 H -0.271 1.271 27 C 0.196 3.804 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.407 0.593 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.006 0.994 44 H 0.050 0.950 45 H 0.249 0.751 46 H -0.021 1.021 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.414 -11.135 -8.419 14.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.134 4.134 3 H 0.130 0.870 4 C -0.179 4.179 5 C 0.404 3.596 6 F -0.171 7.171 7 F -0.161 7.161 8 F -0.168 7.168 9 C 0.310 3.690 10 O -0.458 6.458 11 N -0.363 5.363 12 C 0.018 3.982 13 C -0.094 4.094 14 C -0.175 4.175 15 C -0.133 4.133 16 C -0.162 4.162 17 C 0.010 3.990 18 N -0.327 5.327 19 C -0.386 4.386 20 H 0.080 0.920 21 C -0.237 4.237 22 N -0.578 5.578 23 Si 0.785 3.215 24 H -0.220 1.220 25 H -0.217 1.217 26 H -0.196 1.196 27 C 0.070 3.930 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.146 0.854 32 H 0.135 0.865 33 H 0.244 0.756 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.024 0.976 44 H 0.069 0.931 45 H 0.058 0.942 46 H -0.003 1.003 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.906 -11.695 -8.609 15.038 hybrid contribution -0.285 1.797 -0.276 1.840 sum -4.192 -9.898 -8.885 13.946 Atomic orbital electron populations 1.22075 0.90518 1.04339 1.04209 1.21262 0.99670 1.01325 0.91191 0.86974 1.22656 1.06371 1.00401 0.88460 1.20559 0.74563 0.78472 0.85992 1.93187 1.89234 1.38881 1.95809 1.93158 1.30399 1.96412 1.96173 1.93185 1.83740 1.84448 1.55444 1.20537 0.79448 0.83983 0.85040 1.90664 1.39784 1.28031 1.87364 1.46076 1.52859 1.31914 1.05471 1.21289 0.98035 0.95740 0.83130 1.21358 0.97110 0.97001 0.93952 1.21632 0.93447 1.00883 1.01566 1.21372 0.99653 0.98860 0.93392 1.21917 1.00981 0.95604 0.97701 1.21105 0.95874 0.93380 0.88644 1.44224 1.65257 1.22321 1.00928 1.19434 1.17509 0.94796 1.06830 0.91983 1.25621 0.98508 0.99478 1.00071 1.70154 1.29918 1.38976 1.18707 0.85459 0.79720 0.79747 0.76602 1.21999 1.21728 1.19556 1.20586 0.93752 0.89183 0.89431 0.90504 0.91292 0.89815 0.85435 0.86544 0.75571 0.90625 0.93314 0.91822 0.92773 0.93928 0.90305 0.93160 0.90354 0.91709 0.97609 0.93144 0.94177 1.00250 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.32 71.98 0.60 -2.26 16 2 C -0.11 -2.48 2.62 -11.54 -0.03 -2.51 16 3 H 0.11 2.52 7.45 -2.39 -0.02 2.50 16 4 C -0.14 -2.70 4.20 30.59 0.13 -2.57 16 5 C 0.46 9.03 3.12 71.98 0.22 9.26 16 6 F -0.19 -4.29 16.42 44.97 0.74 -3.55 16 7 F -0.18 -3.50 14.49 44.97 0.65 -2.85 16 8 F -0.19 -3.85 17.32 44.97 0.78 -3.07 16 9 C 0.52 14.74 7.15 87.66 0.63 15.37 16 10 O -0.58 -19.30 15.89 -3.02 -0.05 -19.34 16 11 N -0.71 -20.82 4.82 -463.07 -2.23 -23.05 16 12 C 0.14 4.30 4.57 86.38 0.39 4.70 16 13 C -0.09 -2.99 0.53 -52.10 -0.03 -3.02 16 14 C -0.12 -3.57 7.81 71.98 0.56 -3.01 16 15 C -0.09 -2.75 4.71 30.62 0.14 -2.60 16 16 C -0.12 -3.71 5.74 30.67 0.18 -3.53 16 17 C 0.14 5.32 6.51 86.36 0.56 5.88 16 18 N -0.60 -28.16 2.43 -699.10 -1.70 -29.86 16 19 C -0.26 -13.17 9.59 84.04 0.81 -12.36 16 20 H 0.06 3.17 7.87 -2.91 -0.02 3.14 16 21 C -0.04 -2.16 4.96 84.87 0.42 -1.74 16 22 N -0.93 -51.54 11.09 21.65 0.24 -51.30 16 23 Si 0.96 42.47 29.58 68.60 2.03 44.50 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 C 0.20 8.55 3.71 86.36 0.32 8.87 16 28 H 0.08 1.27 8.09 -2.38 -0.02 1.25 16 29 H 0.07 1.31 7.32 -2.39 -0.02 1.29 16 30 H 0.08 1.47 6.19 -2.39 -0.01 1.45 16 31 H 0.13 2.15 8.10 -2.39 -0.02 2.13 16 32 H 0.12 2.32 7.91 -2.39 -0.02 2.30 16 33 H 0.41 12.09 5.56 -92.71 -0.52 11.57 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.05 1.85 5.97 -2.39 -0.01 1.84 16 38 H 0.04 1.29 6.87 -2.39 -0.02 1.27 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.06 1.95 6.34 -2.39 -0.02 1.94 16 43 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 44 H 0.05 1.95 7.93 -2.38 -0.02 1.93 16 45 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 46 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 47 H 0.07 3.29 4.91 -2.38 -0.01 3.28 16 Total: -1.00 -61.11 370.90 5.84 -55.27 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.47 Total: 22.79 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 4.91 Total: 10.47 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -3.69 Total: -104.22 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.05 Total: -19.34 kcal Atomic # 9 Polarization: -11.64 SS G_CDS: 2.17 Total: -9.47 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -61.11 5.84 -55.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754736960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.474 kcal (2) G-P(sol) polarization free energy of solvation -61.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds