Wall clock time and date at job start Sat Apr 11 2020 04:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47288 * 2 1 4 4 C 1.52998 * 109.46990 * 239.99850 * 2 1 3 5 5 C 1.52998 * 109.47267 * 66.67899 * 4 2 1 6 6 F 1.39900 * 109.47024 * 54.24720 * 5 4 2 7 7 F 1.39901 * 109.47567 * 174.24992 * 5 4 2 8 8 F 1.39906 * 109.47025 * 294.24739 * 5 4 2 9 9 C 1.50703 * 109.46857 * 120.00434 * 2 1 3 10 10 O 1.21278 * 120.00064 * 119.99758 * 9 2 1 11 11 N 1.34779 * 119.99849 * 299.99661 * 9 2 1 12 12 C 1.46500 * 120.00029 * 180.02562 * 11 9 2 13 13 C 1.52998 * 109.47025 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.49912 * 299.99972 * 13 12 11 15 15 C 1.53040 * 109.49617 * 179.97438 * 13 12 11 16 16 C 1.53033 * 109.53765 * 178.71932 * 15 13 12 17 17 C 1.53187 * 109.34444 * 61.31530 * 16 15 13 18 18 N 1.46924 * 108.77796 * 305.38324 * 17 16 15 19 19 C 1.36937 * 120.63260 * 233.63278 * 18 17 16 20 20 H 1.08002 * 120.00218 * 150.56423 * 19 18 17 21 21 C 1.38814 * 119.99835 * 330.55674 * 19 18 17 22 22 N 1.31621 * 119.99926 * 161.44431 * 21 19 18 23 23 Si 1.86799 * 119.99961 * 341.44853 * 21 19 18 24 24 H 1.48492 * 109.47509 * 92.26370 * 23 21 19 25 25 H 1.48507 * 109.47181 * 212.26573 * 23 21 19 26 26 H 1.48508 * 109.47232 * 332.26280 * 23 21 19 27 27 C 1.46930 * 118.73807 * 53.60184 * 18 17 16 28 28 H 1.09001 * 109.47086 * 290.85829 * 1 2 3 29 29 H 1.09002 * 109.46819 * 50.85353 * 1 2 3 30 30 H 1.09003 * 109.47427 * 170.85179 * 1 2 3 31 31 H 1.08999 * 109.47364 * 306.67719 * 4 2 1 32 32 H 1.09002 * 109.47149 * 186.67770 * 4 2 1 33 33 H 0.97006 * 119.99850 * 0.02562 * 11 9 2 34 34 H 1.09001 * 109.46797 * 299.99943 * 12 11 9 35 35 H 1.09000 * 109.46825 * 59.99882 * 12 11 9 36 36 H 1.08999 * 109.47338 * 60.00361 * 14 13 12 37 37 H 1.09005 * 109.47051 * 179.97438 * 14 13 12 38 38 H 1.08995 * 109.47390 * 299.99753 * 14 13 12 39 39 H 1.09001 * 109.45834 * 298.70274 * 15 13 12 40 40 H 1.08991 * 109.45960 * 58.66466 * 15 13 12 41 41 H 1.09004 * 109.47313 * 301.36048 * 16 15 13 42 42 H 1.09008 * 109.49822 * 181.28499 * 16 15 13 43 43 H 1.09004 * 109.59212 * 185.59432 * 17 16 15 44 44 H 1.09002 * 109.70314 * 65.23572 * 17 16 15 45 45 H 0.97001 * 119.99975 * 179.97438 * 22 21 19 46 46 H 1.08997 * 109.58367 * 186.61031 * 27 18 17 47 47 H 1.09000 * 109.69968 * 66.25449 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6715 0.0902 -2.4928 6 9 2.1480 1.3983 -2.3541 7 9 2.2493 -0.4991 -3.6224 8 9 0.2804 0.1137 -2.6391 9 6 2.0323 -0.7105 1.2305 10 8 2.7295 -1.6966 1.1191 11 7 1.7067 -0.2501 2.4546 12 6 2.1954 -0.9404 3.6508 13 6 1.6858 -0.2189 4.9000 14 6 2.1955 1.2237 4.9001 15 6 2.1955 -0.9400 6.1499 16 6 1.7128 -0.2006 7.3999 17 6 0.1813 -0.2022 7.4307 18 7 -0.3178 0.3584 6.1676 19 6 -1.2051 1.4014 6.1696 20 1 -1.2140 2.1044 5.3497 21 6 -2.0934 1.5550 7.2252 22 7 -2.6813 2.7152 7.4271 23 14 -2.4541 0.1152 8.3593 24 1 -1.5291 0.1555 9.5202 25 1 -3.8564 0.2032 8.8404 26 1 -2.2639 -1.1580 7.6188 27 6 0.1539 -0.2208 4.9024 28 1 -0.3633 0.3659 0.9603 29 1 -0.3633 0.6488 -0.7970 30 1 -0.3634 -1.0146 -0.1634 31 1 1.5823 -1.7086 -1.3110 32 1 3.1234 -0.8259 -1.1915 33 1 1.1487 0.5385 2.5436 34 1 1.8323 -1.9682 3.6508 35 1 3.2854 -0.9401 3.6506 36 1 1.8319 1.7376 4.0103 37 1 1.8318 1.7375 5.7900 38 1 3.2854 1.2240 4.9000 39 1 1.8127 -1.9605 6.1618 40 1 3.2851 -0.9611 6.1380 41 1 2.0751 0.8272 7.3767 42 1 2.0951 -0.7016 8.2893 43 1 -0.1682 0.4070 8.2642 44 1 -0.1829 -1.2231 7.5464 45 1 -3.3022 2.8224 8.1646 46 1 -0.2136 0.3763 4.0678 47 1 -0.2105 -1.2438 4.8082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754736961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:06 Heat of formation + Delta-G solvation = -186.362034 kcal Electronic energy + Delta-G solvation = -30737.734847 eV Core-core repulsion = 26119.457541 eV Total energy + Delta-G solvation = -4618.277306 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.40402 -47.89279 -47.85870 -40.26709 -38.79224 -35.40248 -35.05655 -33.29180 -31.39492 -30.86615 -29.35477 -26.88169 -26.25587 -25.38891 -24.79506 -22.83692 -21.97405 -21.18677 -20.16419 -18.92919 -18.82451 -18.12621 -17.82317 -16.97744 -16.46276 -15.98312 -15.74908 -15.34590 -15.02321 -14.76093 -14.61269 -14.34144 -14.16984 -14.15097 -14.01623 -13.99154 -13.79797 -13.69471 -13.53790 -13.21767 -12.78612 -12.63991 -12.41252 -12.35378 -12.01081 -11.91460 -11.70079 -11.60599 -11.53465 -11.32949 -11.26454 -10.73111 -10.58233 -10.52188 -10.08027 -9.99159 -9.80844 -9.64450 -9.49276 -9.06659 -8.66320 -6.99375 -6.00380 -3.39038 2.41690 2.50413 3.05781 3.28121 3.44851 3.47225 3.57516 3.71494 3.78209 4.33096 4.48030 4.51187 4.61557 4.74896 4.91152 5.04106 5.10268 5.13944 5.17425 5.28741 5.34522 5.45741 5.55547 5.58860 5.65620 5.73201 5.84634 5.88912 5.91942 5.96735 6.15491 6.19330 6.27918 6.31887 6.39437 6.51873 6.56016 6.58367 6.66975 6.71311 6.95992 7.42361 7.91579 8.09387 8.26988 8.87923 9.66249 10.04789 11.15463 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.002754 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.031744 B =10164.373896 C =11062.079271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.116 4.116 3 H 0.111 0.889 4 C -0.147 4.147 5 C 0.453 3.547 6 F -0.183 7.183 7 F -0.184 7.184 8 F -0.180 7.180 9 C 0.522 3.478 10 O -0.546 6.546 11 N -0.717 5.717 12 C 0.133 3.867 13 C -0.094 4.094 14 C -0.131 4.131 15 C -0.095 4.095 16 C -0.136 4.136 17 C 0.123 3.877 18 N -0.602 5.602 19 C -0.260 4.260 20 H 0.084 0.916 21 C 0.025 3.975 22 N -0.909 5.909 23 Si 0.885 3.115 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.271 1.271 27 C 0.162 3.838 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.405 0.595 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.024 0.976 45 H 0.263 0.737 46 H 0.059 0.941 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.705 -5.840 -15.040 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.137 4.137 3 H 0.129 0.871 4 C -0.186 4.186 5 C 0.399 3.601 6 F -0.165 7.165 7 F -0.166 7.166 8 F -0.161 7.161 9 C 0.308 3.692 10 O -0.424 6.424 11 N -0.369 5.369 12 C 0.009 3.991 13 C -0.096 4.096 14 C -0.189 4.189 15 C -0.134 4.134 16 C -0.175 4.175 17 C -0.002 4.002 18 N -0.325 5.325 19 C -0.388 4.388 20 H 0.102 0.898 21 C -0.174 4.174 22 N -0.552 5.552 23 Si 0.716 3.284 24 H -0.216 1.216 25 H -0.233 1.233 26 H -0.196 1.196 27 C 0.036 3.964 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.242 0.758 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.042 0.958 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 11.042 -6.412 -15.037 19.727 hybrid contribution -0.615 -0.224 0.605 0.891 sum 10.427 -6.636 -14.432 19.001 Atomic orbital electron populations 1.22116 0.91428 1.03951 1.04302 1.21283 0.98930 1.01410 0.92126 0.87071 1.22703 1.06409 1.00173 0.89280 1.20589 0.74636 0.78848 0.86039 1.93185 1.88168 1.39285 1.95846 1.93193 1.84485 1.83813 1.55099 1.93170 1.30293 1.96451 1.96213 1.20158 0.80130 0.84444 0.84511 1.90703 1.38404 1.26403 1.86922 1.46068 1.53161 1.32224 1.05441 1.21451 0.98667 0.95964 0.82988 1.21343 0.99089 0.96069 0.93105 1.21780 0.98994 0.95104 1.02976 1.21355 0.99216 0.98661 0.94131 1.22048 0.98471 1.00737 0.96263 1.21366 0.91832 0.96897 0.90120 1.44264 1.50387 1.38607 0.99244 1.18860 1.10079 1.01297 1.08599 0.89820 1.25314 0.97039 0.96592 0.98429 1.69811 1.31733 1.22263 1.31373 0.86921 0.76193 0.84640 0.80638 1.21647 1.23267 1.19586 1.20915 0.89529 0.96422 0.89564 0.90884 0.90219 0.91329 0.86506 0.86374 0.75800 0.91543 0.91695 0.93584 0.90318 0.93926 0.92409 0.92758 0.91284 0.92811 0.91070 0.95809 0.92738 0.92296 0.95919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.35 37.16 0.31 -1.03 16 2 C -0.12 -1.01 2.63 -91.77 -0.24 -1.25 16 3 H 0.11 0.84 7.46 -51.93 -0.39 0.45 16 4 C -0.15 -1.19 4.20 -26.73 -0.11 -1.30 16 5 C 0.45 3.89 3.13 37.16 0.12 4.00 16 6 F -0.18 -1.70 16.46 2.25 0.04 -1.66 16 7 F -0.18 -1.73 17.32 2.25 0.04 -1.69 16 8 F -0.18 -1.64 14.44 2.25 0.03 -1.60 16 9 C 0.52 6.03 7.15 -10.98 -0.08 5.95 16 10 O -0.55 -8.00 15.88 5.56 0.09 -7.91 16 11 N -0.72 -8.18 4.82 -60.29 -0.29 -8.47 16 12 C 0.13 1.68 4.57 -4.04 -0.02 1.66 16 13 C -0.09 -1.33 0.53 -154.39 -0.08 -1.41 16 14 C -0.13 -1.87 7.81 37.16 0.29 -1.58 16 15 C -0.10 -1.35 4.71 -26.69 -0.13 -1.47 16 16 C -0.14 -2.21 5.74 -26.62 -0.15 -2.37 16 17 C 0.12 2.53 4.20 -3.71 -0.02 2.51 16 18 N -0.60 -13.10 2.19 -172.32 -0.38 -13.48 16 19 C -0.26 -6.79 10.03 -15.06 -0.15 -6.94 16 20 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 21 C 0.03 0.71 5.25 -17.43 -0.09 0.61 16 22 N -0.91 -26.95 13.97 55.49 0.78 -26.18 16 23 Si 0.89 21.80 24.33 -169.99 -4.14 17.67 16 24 H -0.29 -6.88 6.63 56.52 0.37 -6.51 16 25 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 26 H -0.27 -6.57 6.58 56.52 0.37 -6.20 16 27 C 0.16 2.84 4.94 -3.71 -0.02 2.82 16 28 H 0.07 0.62 7.33 -51.93 -0.38 0.24 16 29 H 0.08 0.63 6.13 -51.93 -0.32 0.31 16 30 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.12 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.12 0.95 7.90 -51.93 -0.41 0.54 16 33 H 0.41 4.29 5.56 -40.82 -0.23 4.07 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.61 6.86 -51.93 -0.36 0.26 16 37 H 0.08 1.35 5.97 -51.93 -0.31 1.04 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 1.16 6.34 -51.93 -0.33 0.83 16 42 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 43 H 0.07 1.62 4.61 -51.93 -0.24 1.38 16 44 H 0.02 0.49 6.99 -51.93 -0.36 0.13 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.06 1.00 6.84 -51.93 -0.36 0.65 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 364.49 15.07 5.49 5.49 Total: -1.00 -30.35 364.49 -5.80 -36.14 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.09 Total: 1.48 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -0.37 Total: 0.21 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.11 Total: -48.12 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.09 Total: -7.91 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.11 Total: -4.96 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.14 Total: 17.67 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.35 -5.80 -36.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754736961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.218 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds