Wall clock time and date at job start Sat Apr 11 2020 04:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47288 * 2 1 4 4 C 1.52998 * 109.46990 * 239.99850 * 2 1 3 5 5 C 1.52998 * 109.47267 * 66.67899 * 4 2 1 6 6 F 1.39900 * 109.47024 * 54.24720 * 5 4 2 7 7 F 1.39901 * 109.47567 * 174.24992 * 5 4 2 8 8 F 1.39906 * 109.47025 * 294.24739 * 5 4 2 9 9 C 1.50703 * 109.46857 * 120.00434 * 2 1 3 10 10 O 1.21278 * 120.00064 * 119.99758 * 9 2 1 11 11 N 1.34779 * 119.99849 * 299.99661 * 9 2 1 12 12 C 1.46500 * 120.00029 * 180.02562 * 11 9 2 13 13 C 1.52998 * 109.47025 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.49912 * 299.99972 * 13 12 11 15 15 C 1.53040 * 109.49617 * 179.97438 * 13 12 11 16 16 C 1.53033 * 109.53765 * 178.71932 * 15 13 12 17 17 C 1.53187 * 109.34444 * 61.31530 * 16 15 13 18 18 N 1.46924 * 108.77796 * 305.38324 * 17 16 15 19 19 C 1.36937 * 120.63260 * 233.63278 * 18 17 16 20 20 H 1.08002 * 120.00218 * 150.56423 * 19 18 17 21 21 C 1.38814 * 119.99835 * 330.55674 * 19 18 17 22 22 N 1.31621 * 119.99926 * 161.44431 * 21 19 18 23 23 Si 1.86799 * 119.99961 * 341.44853 * 21 19 18 24 24 H 1.48492 * 109.47509 * 92.26370 * 23 21 19 25 25 H 1.48507 * 109.47181 * 212.26573 * 23 21 19 26 26 H 1.48508 * 109.47232 * 332.26280 * 23 21 19 27 27 C 1.46930 * 118.73807 * 53.60184 * 18 17 16 28 28 H 1.09001 * 109.47086 * 290.85829 * 1 2 3 29 29 H 1.09002 * 109.46819 * 50.85353 * 1 2 3 30 30 H 1.09003 * 109.47427 * 170.85179 * 1 2 3 31 31 H 1.08999 * 109.47364 * 306.67719 * 4 2 1 32 32 H 1.09002 * 109.47149 * 186.67770 * 4 2 1 33 33 H 0.97006 * 119.99850 * 0.02562 * 11 9 2 34 34 H 1.09001 * 109.46797 * 299.99943 * 12 11 9 35 35 H 1.09000 * 109.46825 * 59.99882 * 12 11 9 36 36 H 1.08999 * 109.47338 * 60.00361 * 14 13 12 37 37 H 1.09005 * 109.47051 * 179.97438 * 14 13 12 38 38 H 1.08995 * 109.47390 * 299.99753 * 14 13 12 39 39 H 1.09001 * 109.45834 * 298.70274 * 15 13 12 40 40 H 1.08991 * 109.45960 * 58.66466 * 15 13 12 41 41 H 1.09004 * 109.47313 * 301.36048 * 16 15 13 42 42 H 1.09008 * 109.49822 * 181.28499 * 16 15 13 43 43 H 1.09004 * 109.59212 * 185.59432 * 17 16 15 44 44 H 1.09002 * 109.70314 * 65.23572 * 17 16 15 45 45 H 0.97001 * 119.99975 * 179.97438 * 22 21 19 46 46 H 1.08997 * 109.58367 * 186.61031 * 27 18 17 47 47 H 1.09000 * 109.69968 * 66.25449 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6715 0.0902 -2.4928 6 9 2.1480 1.3983 -2.3541 7 9 2.2493 -0.4991 -3.6224 8 9 0.2804 0.1137 -2.6391 9 6 2.0323 -0.7105 1.2305 10 8 2.7295 -1.6966 1.1191 11 7 1.7067 -0.2501 2.4546 12 6 2.1954 -0.9404 3.6508 13 6 1.6858 -0.2189 4.9000 14 6 2.1955 1.2237 4.9001 15 6 2.1955 -0.9400 6.1499 16 6 1.7128 -0.2006 7.3999 17 6 0.1813 -0.2022 7.4307 18 7 -0.3178 0.3584 6.1676 19 6 -1.2051 1.4014 6.1696 20 1 -1.2140 2.1044 5.3497 21 6 -2.0934 1.5550 7.2252 22 7 -2.6813 2.7152 7.4271 23 14 -2.4541 0.1152 8.3593 24 1 -1.5291 0.1555 9.5202 25 1 -3.8564 0.2032 8.8404 26 1 -2.2639 -1.1580 7.6188 27 6 0.1539 -0.2208 4.9024 28 1 -0.3633 0.3659 0.9603 29 1 -0.3633 0.6488 -0.7970 30 1 -0.3634 -1.0146 -0.1634 31 1 1.5823 -1.7086 -1.3110 32 1 3.1234 -0.8259 -1.1915 33 1 1.1487 0.5385 2.5436 34 1 1.8323 -1.9682 3.6508 35 1 3.2854 -0.9401 3.6506 36 1 1.8319 1.7376 4.0103 37 1 1.8318 1.7375 5.7900 38 1 3.2854 1.2240 4.9000 39 1 1.8127 -1.9605 6.1618 40 1 3.2851 -0.9611 6.1380 41 1 2.0751 0.8272 7.3767 42 1 2.0951 -0.7016 8.2893 43 1 -0.1682 0.4070 8.2642 44 1 -0.1829 -1.2231 7.5464 45 1 -3.3022 2.8224 8.1646 46 1 -0.2136 0.3763 4.0678 47 1 -0.2105 -1.2438 4.8082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754736961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:05 Heat of formation + Delta-G solvation = -204.541396 kcal Electronic energy + Delta-G solvation = -30738.523163 eV Core-core repulsion = 26119.457541 eV Total energy + Delta-G solvation = -4619.065622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -51.11030 -48.60522 -48.56817 -41.27160 -40.05255 -36.64196 -35.93681 -34.78868 -33.05363 -32.35755 -30.08862 -28.08677 -27.51648 -26.97573 -25.61675 -23.85297 -23.45741 -22.50892 -21.06461 -19.76762 -19.53065 -19.33377 -18.69263 -18.53690 -17.57132 -17.11844 -16.93325 -16.65092 -15.98828 -15.70211 -15.50253 -15.43687 -15.40154 -15.14729 -15.10048 -14.96545 -14.78491 -14.68937 -14.64186 -14.20803 -14.15861 -13.94697 -13.77146 -13.38839 -13.17603 -13.10198 -12.87347 -12.66007 -12.55461 -12.39893 -12.37165 -12.24443 -12.06884 -11.95358 -11.61831 -11.46703 -11.26043 -11.09953 -10.79860 -10.63408 -10.04442 -8.83835 -8.13401 -5.45991 1.30716 1.42202 1.50032 1.58719 1.71531 2.21671 2.43650 2.88292 3.00110 3.10488 3.10510 3.33941 3.59747 3.82559 3.82928 3.86574 3.91329 3.95946 4.20505 4.28442 4.38434 4.43508 4.51671 4.64239 4.66676 4.69456 4.77069 4.79513 4.84634 4.92640 4.93082 5.01131 5.07124 5.12712 5.17451 5.25500 5.32608 5.34252 5.40344 5.48892 5.68784 5.92035 6.17195 6.50584 6.96095 7.18098 7.66380 8.08373 9.06424 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.002754 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.031744 B =10164.373896 C =11062.079271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.110 4.110 3 H 0.126 0.874 4 C -0.142 4.142 5 C 0.457 3.543 6 F -0.187 7.187 7 F -0.189 7.189 8 F -0.183 7.183 9 C 0.524 3.476 10 O -0.576 6.576 11 N -0.716 5.716 12 C 0.142 3.858 13 C -0.081 4.081 14 C -0.126 4.126 15 C -0.094 4.094 16 C -0.129 4.129 17 C 0.116 3.884 18 N -0.613 5.613 19 C -0.236 4.236 20 H 0.058 0.942 21 C -0.034 4.034 22 N -0.959 5.959 23 Si 0.943 3.057 24 H -0.278 1.278 25 H -0.317 1.317 26 H -0.263 1.263 27 C 0.158 3.842 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.410 0.590 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.027 0.973 45 H 0.259 0.741 46 H 0.059 0.941 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.566 -7.384 -15.703 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.131 4.131 3 H 0.144 0.856 4 C -0.181 4.181 5 C 0.403 3.597 6 F -0.168 7.168 7 F -0.170 7.170 8 F -0.164 7.164 9 C 0.311 3.689 10 O -0.456 6.456 11 N -0.367 5.367 12 C 0.018 3.982 13 C -0.083 4.083 14 C -0.184 4.184 15 C -0.132 4.132 16 C -0.168 4.168 17 C -0.009 4.009 18 N -0.337 5.337 19 C -0.366 4.366 20 H 0.075 0.925 21 C -0.228 4.228 22 N -0.605 5.605 23 Si 0.773 3.227 24 H -0.205 1.205 25 H -0.246 1.246 26 H -0.188 1.188 27 C 0.033 3.967 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.247 0.753 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 12.938 -7.985 -15.714 21.865 hybrid contribution -1.148 0.278 0.724 1.385 sum 11.790 -7.707 -14.989 20.569 Atomic orbital electron populations 1.22112 0.91125 1.04054 1.04356 1.21262 0.99017 1.01837 0.90973 0.85643 1.22672 1.06620 1.00151 0.88635 1.20598 0.74397 0.78655 0.86009 1.93180 1.88201 1.39596 1.95848 1.93185 1.84554 1.83877 1.55399 1.93167 1.30556 1.96452 1.96233 1.20526 0.79373 0.83952 0.85011 1.90694 1.39823 1.27779 1.87327 1.46062 1.53075 1.32248 1.05335 1.21291 0.99051 0.95474 0.82382 1.21165 0.96231 0.96460 0.94458 1.21709 1.00276 0.94720 1.01648 1.21379 1.00952 0.98394 0.92467 1.21949 0.94963 1.01168 0.98677 1.21423 0.94938 0.96052 0.88499 1.44370 1.49935 1.38024 1.01391 1.18836 1.09598 1.01276 1.06844 0.92459 1.25880 0.97883 0.98427 1.00658 1.69936 1.33611 1.24189 1.32788 0.85974 0.75223 0.82038 0.79437 1.20526 1.24624 1.18787 1.21087 0.92009 0.95992 0.87582 0.91140 0.89706 0.91389 0.86106 0.86077 0.75303 0.91862 0.90771 0.93082 0.93521 0.91787 0.91754 0.89910 0.92010 0.90453 0.93730 0.95507 0.93187 0.92302 0.95720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 8.35 71.98 0.60 -1.78 16 2 C -0.11 -1.68 2.63 -11.54 -0.03 -1.71 16 3 H 0.13 1.60 7.46 -2.39 -0.02 1.58 16 4 C -0.14 -2.05 4.20 30.59 0.13 -1.92 16 5 C 0.46 7.11 3.13 71.98 0.23 7.34 16 6 F -0.19 -3.15 16.46 44.97 0.74 -2.41 16 7 F -0.19 -3.27 17.32 44.97 0.78 -2.49 16 8 F -0.18 -3.04 14.44 44.97 0.65 -2.39 16 9 C 0.52 10.98 7.15 87.66 0.63 11.61 16 10 O -0.58 -15.69 15.88 -3.02 -0.05 -15.74 16 11 N -0.72 -14.66 4.82 -463.06 -2.23 -16.90 16 12 C 0.14 3.16 4.57 86.38 0.39 3.55 16 13 C -0.08 -2.09 0.53 -52.10 -0.03 -2.12 16 14 C -0.13 -3.32 7.81 71.98 0.56 -2.76 16 15 C -0.09 -2.31 4.71 30.62 0.14 -2.17 16 16 C -0.13 -3.86 5.74 30.67 0.18 -3.68 16 17 C 0.12 4.58 4.20 86.36 0.36 4.94 16 18 N -0.61 -26.30 2.19 -699.09 -1.53 -27.83 16 19 C -0.24 -12.49 10.03 84.03 0.84 -11.65 16 20 H 0.06 3.29 8.06 -2.91 -0.02 3.26 16 21 C -0.03 -1.92 5.25 84.86 0.45 -1.47 16 22 N -0.96 -58.74 13.97 21.65 0.30 -58.43 16 23 Si 0.94 45.74 24.33 68.60 1.67 47.41 16 24 H -0.28 -12.85 6.63 99.48 0.66 -12.19 16 25 H -0.32 -15.87 7.11 99.48 0.71 -15.17 16 26 H -0.26 -12.24 6.58 99.48 0.65 -11.59 16 27 C 0.16 5.31 4.94 86.36 0.43 5.74 16 28 H 0.07 1.09 7.33 -2.39 -0.02 1.07 16 29 H 0.08 1.20 6.13 -2.39 -0.01 1.19 16 30 H 0.07 1.03 8.09 -2.39 -0.02 1.01 16 31 H 0.12 1.66 8.10 -2.39 -0.02 1.64 16 32 H 0.12 1.71 7.90 -2.39 -0.02 1.70 16 33 H 0.41 7.85 5.56 -92.70 -0.52 7.33 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 1.27 6.86 -2.39 -0.02 1.25 16 37 H 0.05 1.55 5.97 -2.38 -0.01 1.53 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.96 6.34 -2.38 -0.02 1.94 16 42 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.04 2.00 4.61 -2.38 -0.01 1.99 16 44 H 0.03 1.05 6.99 -2.39 -0.02 1.04 16 45 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 46 H 0.06 1.94 6.84 -2.39 -0.02 1.93 16 47 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -66.10 364.49 5.59 -60.51 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.38 Total: 14.34 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 4.88 Total: 3.92 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -3.46 Total: -103.16 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.05 Total: -15.74 kcal Atomic # 9 Polarization: -9.46 SS G_CDS: 2.17 Total: -7.29 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.67 Total: 47.41 kcal Total: -66.10 5.59 -60.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754736961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.029 kcal (2) G-P(sol) polarization free energy of solvation -66.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds