Wall clock time and date at job start Sat Apr 11 2020 04:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46961 * 2 1 4 4 C 1.53003 * 109.46928 * 240.00392 * 2 1 3 5 5 C 1.50697 * 109.47356 * 64.99734 * 4 2 1 6 6 O 1.21278 * 120.00184 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00128 * 180.02562 * 5 4 2 8 8 C 1.46499 * 120.00214 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47164 * 176.66455 * 8 7 5 10 10 N 1.46497 * 109.54327 * 54.84832 * 9 8 7 11 11 C 1.36932 * 120.00285 * 62.21846 * 10 9 8 12 12 H 1.08000 * 119.99971 * 354.07483 * 11 10 9 13 13 C 1.38820 * 120.00190 * 174.07144 * 11 10 9 14 14 N 1.31623 * 119.99467 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00018 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46740 * 179.97438 * 15 13 11 17 17 H 1.48496 * 109.47499 * 299.99993 * 15 13 11 18 18 H 1.48504 * 109.47201 * 60.00433 * 15 13 11 19 19 C 1.53177 * 109.54067 * 175.02187 * 9 8 7 20 20 C 1.53285 * 109.06031 * 176.85195 * 19 9 8 21 21 O 1.42900 * 109.46053 * 302.44532 * 20 19 9 22 22 C 1.42904 * 114.09943 * 61.15813 * 21 20 19 23 23 C 1.53087 * 109.41425 * 298.84255 * 22 21 20 24 24 C 1.50693 * 109.47463 * 120.00248 * 2 1 3 25 25 C 1.34518 * 125.79168 * 239.71718 * 24 2 1 26 26 C 1.41384 * 106.84042 * 179.88747 * 25 24 2 27 27 C 1.34506 * 106.84261 * 0.37307 * 26 25 24 28 28 O 1.34307 * 125.78968 * 60.02022 * 24 2 1 29 29 H 1.08997 * 109.47292 * 59.99450 * 1 2 3 30 30 H 1.09000 * 109.46961 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47029 * 299.99833 * 1 2 3 32 32 H 1.09007 * 109.46801 * 304.99660 * 4 2 1 33 33 H 1.09001 * 109.47255 * 184.99978 * 4 2 1 34 34 H 0.97003 * 119.99486 * 0.02562 * 7 5 4 35 35 H 1.08999 * 109.47192 * 56.66264 * 8 7 5 36 36 H 1.09005 * 109.46742 * 296.66034 * 8 7 5 37 37 H 0.97006 * 119.99845 * 242.22108 * 10 9 8 38 38 H 0.97000 * 119.99280 * 179.97438 * 14 13 11 39 39 H 1.09001 * 109.52689 * 296.83908 * 19 9 8 40 40 H 1.08998 * 109.52129 * 57.03151 * 19 9 8 41 41 H 1.09007 * 109.45488 * 182.44942 * 20 19 9 42 42 H 1.09001 * 109.46894 * 62.45037 * 20 19 9 43 43 H 1.08998 * 109.48150 * 178.85483 * 22 21 20 44 44 H 1.09003 * 109.48614 * 58.82955 * 22 21 20 45 45 H 1.08995 * 109.52701 * 297.70105 * 23 22 21 46 46 H 1.09004 * 109.57496 * 177.54261 * 23 22 21 47 47 H 1.07998 * 126.57735 * 0.02562 * 25 24 2 48 48 H 1.08000 * 126.57560 * 180.16628 * 26 25 24 49 49 H 1.08002 * 125.78793 * 179.75458 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0108 1.0870 -2.3633 7 7 1.9843 -0.3918 -3.7003 8 6 1.5972 0.3651 -4.8933 9 6 2.1772 -0.3115 -6.1370 10 7 1.7582 -1.7149 -6.1718 11 6 0.4288 -2.0306 -6.2610 12 1 -0.3162 -1.2503 -6.2093 13 6 0.0385 -3.3535 -6.4179 14 7 0.9465 -4.3043 -6.4814 15 14 -1.7751 -3.7842 -6.5388 16 1 -1.9253 -5.2526 -6.7019 17 1 -2.4708 -3.3494 -5.3011 18 1 -2.3709 -3.0931 -7.7105 19 6 1.6719 0.4053 -7.3929 20 6 2.3208 -0.2307 -8.6274 21 8 3.7429 -0.1526 -8.5113 22 6 4.2749 -0.8448 -7.3799 23 6 3.7064 -0.2340 -6.0963 24 6 2.0324 -0.7104 1.2303 25 6 2.8134 -0.1736 2.1850 26 6 3.0388 -1.1852 3.1467 27 6 2.3889 -2.2821 2.7181 28 8 1.7810 -1.9887 1.5569 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7198 -1.2952 33 1 3.1263 -0.7994 -1.2057 34 1 2.4876 -1.2161 -3.7909 35 1 1.9830 1.3819 -4.8196 36 1 0.5101 0.3934 -4.9687 37 1 2.4227 -2.4205 -6.1315 38 1 0.6737 -5.2287 -6.5907 39 1 0.5882 0.3074 -7.4572 40 1 1.9410 1.4604 -7.3432 41 1 1.9992 0.3028 -9.5220 42 1 2.0187 -1.2756 -8.6990 43 1 5.3610 -0.7538 -7.3758 44 1 3.9985 -1.8978 -7.4348 45 1 4.0164 0.8081 -6.0204 46 1 4.0764 -0.7879 -5.2334 47 1 3.1934 0.8370 2.2127 48 1 3.6236 -1.0954 4.0502 49 1 2.3608 -3.2368 3.2221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754740845.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:10 Heat of formation + Delta-G solvation = -67.015898 kcal Electronic energy + Delta-G solvation = -30109.291408 eV Core-core repulsion = 26038.046079 eV Total energy + Delta-G solvation = -4071.245329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.65376 -39.78276 -38.91867 -36.00075 -34.95456 -33.46337 -32.99345 -32.20739 -30.64056 -29.22877 -29.12502 -28.13761 -26.23167 -24.10835 -23.25793 -22.90957 -21.95964 -21.74822 -20.24050 -19.67903 -18.61146 -17.46663 -17.27504 -16.67936 -16.03715 -15.74893 -15.64653 -15.44308 -15.11000 -14.83284 -14.48783 -14.30088 -14.11955 -13.77326 -13.50486 -13.22615 -13.00879 -12.90022 -12.72679 -12.63807 -12.39337 -12.16761 -11.99545 -11.76279 -11.49339 -11.32452 -11.23759 -10.95110 -10.92735 -10.90584 -10.79818 -10.39881 -10.04732 -10.00567 -9.77380 -9.72554 -9.41392 -9.22757 -8.79891 -8.53449 -8.47261 -7.13058 -5.89650 -3.20307 1.66545 2.52694 2.93328 3.01313 3.36984 3.42368 3.43652 3.65162 4.37881 4.48634 4.57960 4.75971 4.91179 4.95734 5.05215 5.14578 5.23727 5.25841 5.35580 5.46213 5.51212 5.54878 5.63722 5.64271 5.70231 5.71125 5.77508 5.81944 5.94829 5.99699 6.04731 6.07863 6.10554 6.14459 6.20752 6.30924 6.40774 6.41116 6.43500 6.53291 6.56819 6.71904 6.78309 7.00605 7.08729 7.61733 7.71710 8.00427 8.27543 8.64682 9.40187 9.90478 10.27207 11.31876 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011011 B = 0.003253 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.200528 B = 8605.028634 C = 9914.311121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.009 3.991 3 H 0.106 0.894 4 C -0.139 4.139 5 C 0.512 3.488 6 O -0.555 6.555 7 N -0.700 5.700 8 C 0.118 3.882 9 C 0.189 3.811 10 N -0.713 5.713 11 C -0.238 4.238 12 H 0.069 0.931 13 C -0.004 4.004 14 N -0.929 5.929 15 Si 0.902 3.098 16 H -0.292 1.292 17 H -0.286 1.286 18 H -0.286 1.286 19 C -0.152 4.152 20 C 0.070 3.930 21 O -0.393 6.393 22 C 0.066 3.934 23 C -0.150 4.150 24 C 0.004 3.996 25 C -0.216 4.216 26 C -0.215 4.215 27 C -0.047 4.047 28 O -0.171 6.171 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.403 0.597 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.384 0.616 38 H 0.256 0.744 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.146 0.854 48 H 0.145 0.855 49 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.568 6.574 11.751 14.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 H 0.124 0.876 4 C -0.179 4.179 5 C 0.298 3.702 6 O -0.435 6.435 7 N -0.350 5.350 8 C -0.008 4.008 9 C 0.097 3.903 10 N -0.355 5.355 11 C -0.369 4.369 12 H 0.087 0.913 13 C -0.201 4.201 14 N -0.577 5.577 15 Si 0.733 3.267 16 H -0.218 1.218 17 H -0.213 1.213 18 H -0.212 1.212 19 C -0.192 4.192 20 C -0.007 4.007 21 O -0.312 6.312 22 C -0.011 4.011 23 C -0.189 4.189 24 C -0.047 4.047 25 C -0.236 4.236 26 C -0.234 4.234 27 C -0.115 4.115 28 O -0.067 6.067 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.239 0.761 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.219 0.781 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.164 0.836 48 H 0.163 0.837 49 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 5.879 7.156 11.465 14.739 hybrid contribution -0.652 -1.148 0.443 1.393 sum 5.227 6.008 11.908 14.326 Atomic orbital electron populations 1.21978 0.93014 1.02479 1.03591 1.19513 0.97276 0.97740 0.86412 0.87571 1.21740 1.02961 1.00937 0.92286 1.20359 0.79529 0.85573 0.84731 1.90623 1.40781 1.25207 1.86857 1.45777 1.56517 1.27450 1.05235 1.21806 1.00411 0.93599 0.85023 1.19831 0.91324 0.87340 0.91813 1.42476 1.05652 0.99364 1.87996 1.19009 0.83551 0.91858 1.42442 0.91271 1.24690 0.97181 0.95898 1.02328 1.69634 1.31725 0.99796 1.56529 0.86362 0.85299 0.77124 0.77962 1.21755 1.21299 1.21233 1.22484 1.01892 0.98398 0.96466 1.22485 0.79762 1.01722 0.96706 1.87794 1.21896 1.75251 1.46295 1.22460 0.97202 0.96309 0.85147 1.22343 0.96274 1.01581 0.98670 1.22584 1.00657 0.82518 0.98901 1.21596 1.04471 1.01335 0.96157 1.21804 1.05666 0.93710 1.02268 1.24020 0.99443 1.00862 0.87156 1.84042 1.59277 1.28120 1.35239 0.89355 0.92638 0.92734 0.88261 0.88918 0.76137 0.92797 0.91730 0.78084 0.93408 0.90449 0.92684 0.90420 0.91228 0.90110 0.92188 0.91278 0.91303 0.83605 0.83672 0.78317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.92 37.16 0.33 -1.71 16 2 C 0.01 0.12 2.44 -91.77 -0.22 -0.11 16 3 H 0.11 1.30 7.91 -51.93 -0.41 0.88 16 4 C -0.14 -1.80 5.16 -27.88 -0.14 -1.94 16 5 C 0.51 8.15 7.55 -10.99 -0.08 8.07 16 6 O -0.55 -10.23 13.96 5.56 0.08 -10.15 16 7 N -0.70 -11.32 5.13 -60.30 -0.31 -11.63 16 8 C 0.12 2.04 4.37 -4.04 -0.02 2.02 16 9 C 0.19 3.25 0.41 -131.64 -0.05 3.20 16 10 N -0.71 -14.91 3.61 -47.06 -0.17 -15.08 16 11 C -0.24 -5.79 8.67 -15.06 -0.13 -5.92 16 12 H 0.07 1.70 6.78 -52.49 -0.36 1.35 16 13 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 14 N -0.93 -25.57 13.07 55.49 0.73 -24.85 16 15 Si 0.90 21.36 29.55 -169.99 -5.02 16.33 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 C -0.15 -2.59 4.80 -26.49 -0.13 -2.72 16 20 C 0.07 1.21 6.68 37.31 0.25 1.46 16 21 O -0.39 -6.80 10.77 -35.23 -0.38 -7.18 16 22 C 0.07 1.02 6.67 37.20 0.25 1.27 16 23 C -0.15 -2.24 4.80 -26.59 -0.13 -2.37 16 24 C 0.00 0.05 5.83 -35.63 -0.21 -0.16 16 25 C -0.22 -2.42 10.78 -39.70 -0.43 -2.84 16 26 C -0.22 -2.16 10.91 -39.70 -0.43 -2.59 16 27 C -0.05 -0.47 12.09 29.41 0.36 -0.12 16 28 O -0.17 -2.17 10.65 5.68 0.06 -2.11 16 29 H 0.09 1.35 5.95 -51.93 -0.31 1.04 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 1.32 8.14 -51.92 -0.42 0.90 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.40 6.35 7.42 -40.82 -0.30 6.05 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.28 7.47 -51.93 -0.39 0.89 16 37 H 0.38 8.65 6.81 -40.82 -0.28 8.38 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.08 1.41 7.19 -51.93 -0.37 1.04 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 42 H 0.07 1.40 7.75 -51.93 -0.40 1.00 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.04 7.14 -51.93 -0.37 0.67 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.07 0.95 7.37 -51.93 -0.38 0.57 16 47 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 48 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 49 H 0.20 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 391.19 15.07 5.90 5.90 Total: -1.00 -29.13 391.19 -7.79 -36.93 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: -7.78 Total: 16.52 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -0.89 Total: -4.67 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.25 Total: -51.56 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.24 Total: -19.44 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.13 -7.79 -36.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754740845.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.091 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds