Wall clock time and date at job start Sat Apr 11 2020 04:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46961 * 2 1 4 4 C 1.53003 * 109.46928 * 240.00392 * 2 1 3 5 5 C 1.50697 * 109.47356 * 64.99734 * 4 2 1 6 6 O 1.21278 * 120.00184 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00128 * 180.02562 * 5 4 2 8 8 C 1.46499 * 120.00214 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47164 * 176.66455 * 8 7 5 10 10 N 1.46497 * 109.54327 * 54.84832 * 9 8 7 11 11 C 1.36932 * 120.00285 * 62.21846 * 10 9 8 12 12 H 1.08000 * 119.99971 * 354.07483 * 11 10 9 13 13 C 1.38820 * 120.00190 * 174.07144 * 11 10 9 14 14 N 1.31623 * 119.99467 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00018 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46740 * 179.97438 * 15 13 11 17 17 H 1.48496 * 109.47499 * 299.99993 * 15 13 11 18 18 H 1.48504 * 109.47201 * 60.00433 * 15 13 11 19 19 C 1.53177 * 109.54067 * 175.02187 * 9 8 7 20 20 C 1.53285 * 109.06031 * 176.85195 * 19 9 8 21 21 O 1.42900 * 109.46053 * 302.44532 * 20 19 9 22 22 C 1.42904 * 114.09943 * 61.15813 * 21 20 19 23 23 C 1.53087 * 109.41425 * 298.84255 * 22 21 20 24 24 C 1.50693 * 109.47463 * 120.00248 * 2 1 3 25 25 C 1.34518 * 125.79168 * 239.71718 * 24 2 1 26 26 C 1.41384 * 106.84042 * 179.88747 * 25 24 2 27 27 C 1.34506 * 106.84261 * 0.37307 * 26 25 24 28 28 O 1.34307 * 125.78968 * 60.02022 * 24 2 1 29 29 H 1.08997 * 109.47292 * 59.99450 * 1 2 3 30 30 H 1.09000 * 109.46961 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47029 * 299.99833 * 1 2 3 32 32 H 1.09007 * 109.46801 * 304.99660 * 4 2 1 33 33 H 1.09001 * 109.47255 * 184.99978 * 4 2 1 34 34 H 0.97003 * 119.99486 * 0.02562 * 7 5 4 35 35 H 1.08999 * 109.47192 * 56.66264 * 8 7 5 36 36 H 1.09005 * 109.46742 * 296.66034 * 8 7 5 37 37 H 0.97006 * 119.99845 * 242.22108 * 10 9 8 38 38 H 0.97000 * 119.99280 * 179.97438 * 14 13 11 39 39 H 1.09001 * 109.52689 * 296.83908 * 19 9 8 40 40 H 1.08998 * 109.52129 * 57.03151 * 19 9 8 41 41 H 1.09007 * 109.45488 * 182.44942 * 20 19 9 42 42 H 1.09001 * 109.46894 * 62.45037 * 20 19 9 43 43 H 1.08998 * 109.48150 * 178.85483 * 22 21 20 44 44 H 1.09003 * 109.48614 * 58.82955 * 22 21 20 45 45 H 1.08995 * 109.52701 * 297.70105 * 23 22 21 46 46 H 1.09004 * 109.57496 * 177.54261 * 23 22 21 47 47 H 1.07998 * 126.57735 * 0.02562 * 25 24 2 48 48 H 1.08000 * 126.57560 * 180.16628 * 26 25 24 49 49 H 1.08002 * 125.78793 * 179.75458 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0108 1.0870 -2.3633 7 7 1.9843 -0.3918 -3.7003 8 6 1.5972 0.3651 -4.8933 9 6 2.1772 -0.3115 -6.1370 10 7 1.7582 -1.7149 -6.1718 11 6 0.4288 -2.0306 -6.2610 12 1 -0.3162 -1.2503 -6.2093 13 6 0.0385 -3.3535 -6.4179 14 7 0.9465 -4.3043 -6.4814 15 14 -1.7751 -3.7842 -6.5388 16 1 -1.9253 -5.2526 -6.7019 17 1 -2.4708 -3.3494 -5.3011 18 1 -2.3709 -3.0931 -7.7105 19 6 1.6719 0.4053 -7.3929 20 6 2.3208 -0.2307 -8.6274 21 8 3.7429 -0.1526 -8.5113 22 6 4.2749 -0.8448 -7.3799 23 6 3.7064 -0.2340 -6.0963 24 6 2.0324 -0.7104 1.2303 25 6 2.8134 -0.1736 2.1850 26 6 3.0388 -1.1852 3.1467 27 6 2.3889 -2.2821 2.7181 28 8 1.7810 -1.9887 1.5569 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7198 -1.2952 33 1 3.1263 -0.7994 -1.2057 34 1 2.4876 -1.2161 -3.7909 35 1 1.9830 1.3819 -4.8196 36 1 0.5101 0.3934 -4.9687 37 1 2.4227 -2.4205 -6.1315 38 1 0.6737 -5.2287 -6.5907 39 1 0.5882 0.3074 -7.4572 40 1 1.9410 1.4604 -7.3432 41 1 1.9992 0.3028 -9.5220 42 1 2.0187 -1.2756 -8.6990 43 1 5.3610 -0.7538 -7.3758 44 1 3.9985 -1.8978 -7.4348 45 1 4.0164 0.8081 -6.0204 46 1 4.0764 -0.7879 -5.2334 47 1 3.1934 0.8370 2.2127 48 1 3.6236 -1.0954 4.0502 49 1 2.3608 -3.2368 3.2221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754740845.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:09 Heat of formation + Delta-G solvation = -85.038802 kcal Electronic energy + Delta-G solvation = -30110.072940 eV Core-core repulsion = 26038.046079 eV Total energy + Delta-G solvation = -4072.026861 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.48478 -41.13869 -40.25308 -37.39731 -36.08141 -35.05612 -33.85954 -33.79350 -31.96482 -30.95536 -30.13851 -29.19365 -27.53152 -25.92591 -24.50061 -24.11626 -23.17813 -22.62758 -21.36056 -20.74146 -20.08693 -19.09566 -18.43772 -17.79100 -17.20910 -17.00505 -16.85810 -16.76840 -16.43535 -16.23799 -15.90164 -15.59537 -15.40238 -15.33033 -14.89775 -14.37588 -14.22988 -13.99286 -13.68801 -13.68440 -13.67168 -13.48665 -13.21421 -13.15302 -12.91695 -12.81859 -12.67975 -12.44336 -12.27471 -12.26447 -12.10265 -11.97765 -11.74730 -11.39117 -11.13040 -10.99233 -10.81232 -10.72729 -10.31215 -9.85997 -9.35691 -8.97030 -7.90850 -5.17041 0.83504 1.45733 1.47965 1.51593 1.72773 1.74197 2.12771 2.40850 2.57176 3.08066 3.42245 3.63422 3.74321 3.76878 3.89663 3.98347 3.99501 4.12718 4.16697 4.18821 4.24630 4.31702 4.42397 4.48622 4.62676 4.63755 4.68376 4.78304 4.79607 4.83563 4.90365 4.90421 4.93846 5.05118 5.05391 5.11142 5.14215 5.19403 5.23036 5.29097 5.35303 5.36050 5.60291 5.65659 5.66746 6.26989 6.30885 6.37334 6.69618 7.35100 7.40538 8.09518 8.36391 9.30940 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011011 B = 0.003253 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.200528 B = 8605.028634 C = 9914.311121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.015 3.985 3 H 0.109 0.891 4 C -0.130 4.130 5 C 0.510 3.490 6 O -0.580 6.580 7 N -0.700 5.700 8 C 0.126 3.874 9 C 0.187 3.813 10 N -0.712 5.712 11 C -0.214 4.214 12 H 0.065 0.935 13 C -0.058 4.058 14 N -0.958 5.958 15 Si 0.947 3.053 16 H -0.299 1.299 17 H -0.290 1.290 18 H -0.283 1.283 19 C -0.150 4.150 20 C 0.075 3.925 21 O -0.398 6.398 22 C 0.064 3.936 23 C -0.142 4.142 24 C -0.019 4.019 25 C -0.217 4.217 26 C -0.224 4.224 27 C -0.049 4.049 28 O -0.193 6.193 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.406 0.594 35 H 0.067 0.933 36 H 0.035 0.965 37 H 0.377 0.623 38 H 0.248 0.752 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.034 0.966 43 H 0.112 0.888 44 H 0.036 0.964 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.160 0.840 48 H 0.169 0.831 49 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.102 7.639 13.071 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.003 4.003 3 H 0.127 0.873 4 C -0.170 4.170 5 C 0.298 3.702 6 O -0.462 6.462 7 N -0.350 5.350 8 C 0.000 4.000 9 C 0.096 3.904 10 N -0.353 5.353 11 C -0.346 4.346 12 H 0.083 0.917 13 C -0.251 4.251 14 N -0.609 5.609 15 Si 0.778 3.222 16 H -0.226 1.226 17 H -0.216 1.216 18 H -0.210 1.210 19 C -0.190 4.190 20 C -0.002 4.002 21 O -0.317 6.317 22 C -0.013 4.013 23 C -0.180 4.180 24 C -0.069 4.069 25 C -0.236 4.236 26 C -0.243 4.243 27 C -0.116 4.116 28 O -0.090 6.090 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.242 0.758 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.211 0.789 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.053 0.947 43 H 0.130 0.870 44 H 0.055 0.945 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.177 0.823 48 H 0.187 0.813 49 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 7.418 8.262 12.787 16.935 hybrid contribution -1.096 -1.393 0.088 1.774 sum 6.322 6.870 12.875 15.904 Atomic orbital electron populations 1.21897 0.94046 1.01758 1.02899 1.19395 0.96372 0.97972 0.86595 0.87284 1.21710 1.04318 1.00018 0.90947 1.20863 0.78726 0.85329 0.85286 1.90615 1.41815 1.26524 1.87233 1.45791 1.56556 1.27476 1.05161 1.21632 0.98567 0.94444 0.85377 1.20023 0.93363 0.85127 0.91871 1.42496 1.04227 1.00992 1.87631 1.19153 0.85016 0.91311 1.39165 0.91727 1.25171 0.99463 0.96337 1.04140 1.69741 1.32588 0.99454 1.59077 0.85619 0.82662 0.76233 0.77636 1.22592 1.21650 1.20997 1.22455 1.00790 0.99681 0.96083 1.22393 0.80142 0.99861 0.97758 1.87796 1.21481 1.75252 1.47153 1.22585 0.98921 0.94871 0.84907 1.22297 0.93858 1.02944 0.98889 1.22479 1.02181 0.82855 0.99370 1.21914 1.03569 1.02209 0.95893 1.22159 1.05943 0.93269 1.02929 1.24776 0.98314 1.02278 0.86188 1.84025 1.60072 1.28376 1.36483 0.91630 0.93322 0.91718 0.88693 0.86655 0.75784 0.91504 0.94701 0.78905 0.94345 0.92127 0.90365 0.88417 0.94730 0.87050 0.94537 0.89334 0.89994 0.82255 0.81309 0.75158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 8.92 71.98 0.64 -3.33 16 2 C 0.02 0.37 2.44 -11.54 -0.03 0.34 16 3 H 0.11 2.56 7.91 -2.39 -0.02 2.54 16 4 C -0.13 -3.24 5.16 29.85 0.15 -3.09 16 5 C 0.51 15.94 7.55 87.66 0.66 16.60 16 6 O -0.58 -21.28 13.96 -3.02 -0.04 -21.33 16 7 N -0.70 -22.07 5.13 -463.06 -2.38 -24.44 16 8 C 0.13 4.25 4.37 86.38 0.38 4.63 16 9 C 0.19 6.24 0.41 3.72 0.00 6.24 16 10 N -0.71 -29.86 3.61 -302.81 -1.09 -30.95 16 11 C -0.21 -10.54 8.67 84.04 0.73 -9.82 16 12 H 0.06 3.22 6.78 -2.91 -0.02 3.20 16 13 C -0.06 -3.07 5.50 84.86 0.47 -2.61 16 14 N -0.96 -53.79 13.07 21.65 0.28 -53.50 16 15 Si 0.95 44.69 29.55 68.60 2.03 46.72 16 16 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 17 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 19 C -0.15 -4.93 4.80 30.75 0.15 -4.79 16 20 C 0.08 2.53 6.68 72.08 0.48 3.01 16 21 O -0.40 -13.00 10.77 -148.98 -1.60 -14.61 16 22 C 0.06 1.86 6.67 72.01 0.48 2.34 16 23 C -0.14 -3.88 4.80 30.68 0.15 -3.73 16 24 C -0.02 -0.44 5.83 24.83 0.14 -0.30 16 25 C -0.22 -4.40 10.78 22.19 0.24 -4.16 16 26 C -0.22 -3.92 10.91 22.19 0.24 -3.68 16 27 C -0.05 -0.87 12.09 66.97 0.81 -0.06 16 28 O -0.19 -4.66 10.65 -2.58 -0.03 -4.68 16 29 H 0.06 2.05 5.95 -2.39 -0.01 2.03 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.41 12.39 7.42 -92.71 -0.69 11.70 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.03 1.38 7.47 -2.38 -0.02 1.36 16 37 H 0.38 17.10 6.81 -92.70 -0.63 16.46 16 38 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 39 H 0.06 2.19 7.19 -2.39 -0.02 2.17 16 40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 42 H 0.03 1.41 7.75 -2.39 -0.02 1.39 16 43 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.04 1.25 7.14 -2.39 -0.02 1.23 16 45 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.08 2.05 7.37 -2.39 -0.02 2.04 16 47 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 48 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 49 H 0.23 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -63.20 391.19 2.51 -60.70 By element: Atomic # 1 Polarization: 44.85 SS G_CDS: -0.36 Total: 44.49 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 5.70 Total: -2.39 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -3.19 Total: -108.90 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -1.67 Total: -40.62 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -63.20 2.51 -60.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754740845.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.343 kcal (2) G-P(sol) polarization free energy of solvation -63.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds