Wall clock time and date at job start Sat Apr 11 2020 04:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47377 * 2 1 4 4 C 1.53000 * 109.47273 * 119.99978 * 2 1 3 5 5 C 1.50698 * 109.47158 * 295.00083 * 4 2 1 6 6 O 1.21278 * 120.00220 * 0.02562 * 5 4 2 7 7 N 1.34784 * 119.99511 * 179.97438 * 5 4 2 8 8 C 1.46503 * 119.99456 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46751 * 176.96659 * 8 7 5 10 10 N 1.46496 * 109.54298 * 54.82372 * 9 8 7 11 11 C 1.36933 * 120.00253 * 61.86859 * 10 9 8 12 12 H 1.08004 * 119.99523 * 354.89888 * 11 10 9 13 13 C 1.38817 * 120.00417 * 174.89752 * 11 10 9 14 14 N 1.31618 * 119.99998 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99415 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46773 * 269.99283 * 15 13 11 17 17 H 1.48495 * 109.47706 * 29.99633 * 15 13 11 18 18 H 1.48506 * 109.46939 * 150.00054 * 15 13 11 19 19 C 1.53175 * 109.53962 * 175.00215 * 9 8 7 20 20 C 1.53288 * 109.06274 * 176.85511 * 19 9 8 21 21 O 1.42908 * 109.45737 * 302.44080 * 20 19 9 22 22 C 1.42905 * 114.09697 * 61.16054 * 21 20 19 23 23 C 1.53097 * 109.41317 * 298.84214 * 22 21 20 24 24 C 1.50702 * 109.47339 * 240.00605 * 2 1 3 25 25 C 1.34516 * 125.79363 * 119.99905 * 24 2 1 26 26 C 1.41385 * 106.83800 * 180.02562 * 25 24 2 27 27 C 1.34513 * 106.84240 * 359.97438 * 26 25 24 28 28 O 1.34296 * 108.41980 * 359.73954 * 27 26 25 29 29 H 1.08998 * 109.46680 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47197 * 299.99614 * 1 2 3 31 31 H 1.08999 * 109.46967 * 59.99946 * 1 2 3 32 32 H 1.09003 * 109.47101 * 175.00138 * 4 2 1 33 33 H 1.08997 * 109.46672 * 55.00646 * 4 2 1 34 34 H 0.96998 * 120.00254 * 0.02562 * 7 5 4 35 35 H 1.09003 * 109.47061 * 56.96796 * 8 7 5 36 36 H 1.08999 * 109.47126 * 296.97036 * 8 7 5 37 37 H 0.97005 * 119.99871 * 241.86721 * 10 9 8 38 38 H 0.96999 * 119.99682 * 180.02562 * 14 13 11 39 39 H 1.09000 * 109.52289 * 296.83515 * 19 9 8 40 40 H 1.09001 * 109.52647 * 57.03164 * 19 9 8 41 41 H 1.09001 * 109.45777 * 182.44860 * 20 19 9 42 42 H 1.08998 * 109.47131 * 62.44127 * 20 19 9 43 43 H 1.09000 * 109.48145 * 178.85803 * 22 21 20 44 44 H 1.08997 * 109.48895 * 58.82545 * 22 21 20 45 45 H 1.09003 * 109.52172 * 297.70309 * 23 22 21 46 46 H 1.09000 * 109.57367 * 177.55047 * 23 22 21 47 47 H 1.07992 * 126.57900 * 359.95990 * 25 24 2 48 48 H 1.07999 * 126.57362 * 180.02562 * 26 25 24 49 49 H 1.08001 * 125.78749 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0109 1.0869 2.3634 7 7 1.9846 -0.3920 3.7002 8 6 1.5965 0.3643 4.8934 9 6 2.0400 -0.3954 6.1452 10 7 3.4766 -0.6718 6.0674 11 6 4.3712 0.3635 6.0147 12 1 4.0159 1.3812 5.9473 13 6 5.7347 0.1051 6.0480 14 7 6.5946 1.1003 5.9968 15 14 6.3490 -1.6552 6.1640 16 1 6.4941 -2.0357 7.5920 17 1 5.3758 -2.5636 5.5061 18 1 7.6657 -1.7656 5.4861 19 6 1.7475 0.4504 7.3883 20 6 2.1228 -0.3518 8.6394 21 8 1.3933 -1.5806 8.6535 22 6 1.6628 -2.4320 7.5379 23 6 1.2688 -1.7152 6.2438 24 6 2.0324 -0.7103 -1.2305 25 6 2.8090 -0.1718 -2.1878 26 6 3.0378 -1.1846 -3.1474 27 6 2.3878 -2.2815 -2.7189 28 8 1.7857 -1.9901 -1.5544 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1264 -0.7994 1.2056 33 1 1.6055 -1.7198 1.2950 34 1 2.4885 -1.2159 3.7907 35 1 0.5137 0.4888 4.9084 36 1 2.0746 1.3436 4.8741 37 1 3.7940 -1.5884 6.0533 38 1 7.5473 0.9196 6.0197 39 1 2.3352 1.3676 7.3514 40 1 0.6863 0.6976 7.4192 41 1 1.8766 0.2273 9.5294 42 1 3.1918 -0.5639 8.6278 43 1 1.0854 -3.3515 7.6345 44 1 2.7258 -2.6714 7.5116 45 1 0.1980 -1.5116 6.2517 46 1 1.5135 -2.3449 5.3884 47 1 3.1846 0.8403 -2.2181 48 1 3.6229 -1.0949 -4.0507 49 1 2.3592 -3.2361 -3.2233 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754740846.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:13 Heat of formation + Delta-G solvation = -62.301230 kcal Electronic energy + Delta-G solvation = -30160.557693 eV Core-core repulsion = 26089.516807 eV Total energy + Delta-G solvation = -4071.040886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.66607 -39.88387 -39.02423 -36.13094 -35.00769 -33.52170 -33.00353 -32.23912 -30.76853 -29.90505 -29.17283 -28.19783 -26.35725 -23.93095 -23.34065 -22.89879 -21.99387 -21.77391 -20.27340 -19.71960 -18.60858 -17.91042 -17.49304 -16.77262 -16.06071 -15.79790 -15.64014 -15.49165 -15.43922 -14.68182 -14.55683 -14.44758 -14.15928 -14.08488 -13.35014 -13.18252 -12.95286 -12.90361 -12.72948 -12.71985 -12.64191 -12.45446 -12.08582 -11.95974 -11.63188 -11.39117 -11.26086 -11.05199 -11.04406 -10.98911 -10.93998 -10.44531 -10.13510 -10.00531 -9.89722 -9.68700 -9.45812 -9.30028 -8.91274 -8.54333 -8.51905 -7.44780 -5.88419 -3.27243 1.65004 2.53424 2.90663 2.98335 3.22025 3.27660 3.35511 3.59749 4.24188 4.45605 4.54872 4.71160 4.91021 4.95283 4.95895 5.02908 5.07816 5.14185 5.24634 5.33388 5.41479 5.42399 5.52953 5.58249 5.60368 5.64701 5.71188 5.82746 5.84903 5.90731 5.95191 5.99077 6.01914 6.09975 6.13040 6.17018 6.24831 6.33874 6.40945 6.43875 6.50060 6.60959 6.67845 6.93750 7.06710 7.57989 7.84434 7.94142 8.29263 8.60312 9.04999 9.76892 9.94871 11.29184 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011831 B = 0.003269 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.160313 B = 8563.078839 C = 9691.814844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.008 3.992 3 H 0.109 0.891 4 C -0.139 4.139 5 C 0.513 3.487 6 O -0.551 6.551 7 N -0.703 5.703 8 C 0.119 3.881 9 C 0.195 3.805 10 N -0.740 5.740 11 C -0.242 4.242 12 H 0.092 0.908 13 C 0.012 3.988 14 N -0.927 5.927 15 Si 0.879 3.121 16 H -0.284 1.284 17 H -0.280 1.280 18 H -0.292 1.292 19 C -0.152 4.152 20 C 0.069 3.931 21 O -0.391 6.391 22 C 0.066 3.934 23 C -0.155 4.155 24 C 0.002 3.998 25 C -0.213 4.213 26 C -0.213 4.213 27 C -0.050 4.050 28 O -0.174 6.174 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.400 0.600 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.050 0.950 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.148 0.852 48 H 0.146 0.854 49 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.030 -7.847 -10.412 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 H 0.127 0.873 4 C -0.179 4.179 5 C 0.299 3.701 6 O -0.430 6.430 7 N -0.352 5.352 8 C -0.007 4.007 9 C 0.104 3.896 10 N -0.384 5.384 11 C -0.372 4.372 12 H 0.110 0.890 13 C -0.184 4.184 14 N -0.574 5.574 15 Si 0.709 3.291 16 H -0.211 1.211 17 H -0.206 1.206 18 H -0.218 1.218 19 C -0.192 4.192 20 C -0.008 4.008 21 O -0.310 6.310 22 C -0.011 4.011 23 C -0.193 4.193 24 C -0.048 4.048 25 C -0.232 4.232 26 C -0.232 4.232 27 C -0.118 4.118 28 O -0.070 6.070 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.235 0.765 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.195 0.805 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.165 0.835 48 H 0.164 0.836 49 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -11.639 -7.126 -10.142 17.002 hybrid contribution 1.503 -1.474 -0.505 2.165 sum -10.136 -8.600 -10.646 17.031 Atomic orbital electron populations 1.21967 0.93142 1.02086 1.03666 1.19525 0.97072 0.98086 0.86346 0.87327 1.21739 1.03537 1.00283 0.92375 1.20343 0.79491 0.85629 0.84611 1.90633 1.40996 1.24679 1.86697 1.45749 1.56335 1.27677 1.05466 1.21780 0.98066 0.96300 0.84518 1.19792 0.85016 0.92517 0.92295 1.42899 1.00308 1.05420 1.89738 1.18905 0.86341 0.88730 1.43217 0.88998 1.24648 0.95803 0.96219 1.01756 1.69686 1.01512 1.29492 1.56725 0.86676 0.78343 0.86153 0.77899 1.21064 1.20622 1.21804 1.22466 1.00559 1.00489 0.95655 1.22516 0.96715 0.84270 0.97280 1.87824 1.67771 1.30785 1.44628 1.22445 1.00167 0.92707 0.85807 1.22405 1.00829 0.97610 0.98449 1.22561 1.01013 0.82338 0.98912 1.21642 1.04077 1.01444 0.96065 1.21826 1.05334 0.93713 1.02320 1.23985 0.99791 1.00860 0.87115 1.83997 1.59847 1.28074 1.35076 0.92908 0.89424 0.92655 0.88465 0.88800 0.76547 0.92549 0.91137 0.80478 0.92972 0.89783 0.92320 0.89947 0.91618 0.89783 0.93161 0.90680 0.91283 0.83467 0.83627 0.78336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.92 37.16 0.33 -1.47 16 2 C 0.01 0.10 2.44 -91.77 -0.22 -0.12 16 3 H 0.11 1.42 7.91 -51.93 -0.41 1.01 16 4 C -0.14 -1.76 5.16 -27.88 -0.14 -1.91 16 5 C 0.51 8.06 7.55 -10.98 -0.08 7.97 16 6 O -0.55 -10.11 13.96 5.56 0.08 -10.03 16 7 N -0.70 -11.06 5.13 -60.29 -0.31 -11.37 16 8 C 0.12 2.02 4.36 -4.04 -0.02 2.00 16 9 C 0.20 3.22 0.41 -131.64 -0.05 3.17 16 10 N -0.74 -14.69 3.42 -47.06 -0.16 -14.85 16 11 C -0.24 -5.99 9.16 -15.06 -0.14 -6.13 16 12 H 0.09 2.52 7.00 -52.48 -0.37 2.15 16 13 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 14 N -0.93 -27.44 13.97 55.49 0.78 -26.66 16 15 Si 0.88 20.43 27.79 -169.99 -4.72 15.71 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -5.93 6.45 56.52 0.36 -5.57 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 C -0.15 -2.50 4.80 -26.49 -0.13 -2.62 16 20 C 0.07 1.13 6.68 37.31 0.25 1.38 16 21 O -0.39 -6.33 10.77 -35.23 -0.38 -6.71 16 22 C 0.07 0.94 6.67 37.21 0.25 1.19 16 23 C -0.15 -2.14 4.80 -26.59 -0.13 -2.26 16 24 C 0.00 0.03 5.83 -35.62 -0.21 -0.18 16 25 C -0.21 -2.50 10.78 -39.70 -0.43 -2.93 16 26 C -0.21 -2.19 10.91 -39.70 -0.43 -2.62 16 27 C -0.05 -0.49 12.09 29.42 0.36 -0.13 16 28 O -0.17 -2.09 10.65 5.72 0.06 -2.03 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.19 5.95 -51.93 -0.31 0.88 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.40 5.95 7.41 -40.82 -0.30 5.65 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.41 7.46 -51.93 -0.39 1.02 16 37 H 0.36 7.16 4.63 -40.82 -0.19 6.97 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.08 1.54 7.19 -51.93 -0.37 1.17 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.07 1.23 7.75 -51.93 -0.40 0.83 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.77 7.14 -51.93 -0.37 0.40 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.07 0.87 7.36 -51.93 -0.38 0.49 16 47 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 48 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 49 H 0.20 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 387.99 15.07 5.85 5.85 Total: -1.00 -30.75 387.99 -7.45 -38.20 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -7.74 Total: 16.34 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -0.90 Total: -4.44 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.30 Total: -52.88 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.24 Total: -18.77 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.72 Total: 15.71 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.75 -7.45 -38.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754740846.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.105 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds