Wall clock time and date at job start Sat Apr 11 2020 04:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47377 * 2 1 4 4 C 1.53000 * 109.47273 * 119.99978 * 2 1 3 5 5 C 1.50698 * 109.47158 * 295.00083 * 4 2 1 6 6 O 1.21278 * 120.00220 * 0.02562 * 5 4 2 7 7 N 1.34784 * 119.99511 * 179.97438 * 5 4 2 8 8 C 1.46503 * 119.99456 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46751 * 176.96659 * 8 7 5 10 10 N 1.46496 * 109.54298 * 54.82372 * 9 8 7 11 11 C 1.36933 * 120.00253 * 61.86859 * 10 9 8 12 12 H 1.08004 * 119.99523 * 354.89888 * 11 10 9 13 13 C 1.38817 * 120.00417 * 174.89752 * 11 10 9 14 14 N 1.31618 * 119.99998 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99415 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46773 * 269.99283 * 15 13 11 17 17 H 1.48495 * 109.47706 * 29.99633 * 15 13 11 18 18 H 1.48506 * 109.46939 * 150.00054 * 15 13 11 19 19 C 1.53175 * 109.53962 * 175.00215 * 9 8 7 20 20 C 1.53288 * 109.06274 * 176.85511 * 19 9 8 21 21 O 1.42908 * 109.45737 * 302.44080 * 20 19 9 22 22 C 1.42905 * 114.09697 * 61.16054 * 21 20 19 23 23 C 1.53097 * 109.41317 * 298.84214 * 22 21 20 24 24 C 1.50702 * 109.47339 * 240.00605 * 2 1 3 25 25 C 1.34516 * 125.79363 * 119.99905 * 24 2 1 26 26 C 1.41385 * 106.83800 * 180.02562 * 25 24 2 27 27 C 1.34513 * 106.84240 * 359.97438 * 26 25 24 28 28 O 1.34296 * 108.41980 * 359.73954 * 27 26 25 29 29 H 1.08998 * 109.46680 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47197 * 299.99614 * 1 2 3 31 31 H 1.08999 * 109.46967 * 59.99946 * 1 2 3 32 32 H 1.09003 * 109.47101 * 175.00138 * 4 2 1 33 33 H 1.08997 * 109.46672 * 55.00646 * 4 2 1 34 34 H 0.96998 * 120.00254 * 0.02562 * 7 5 4 35 35 H 1.09003 * 109.47061 * 56.96796 * 8 7 5 36 36 H 1.08999 * 109.47126 * 296.97036 * 8 7 5 37 37 H 0.97005 * 119.99871 * 241.86721 * 10 9 8 38 38 H 0.96999 * 119.99682 * 180.02562 * 14 13 11 39 39 H 1.09000 * 109.52289 * 296.83515 * 19 9 8 40 40 H 1.09001 * 109.52647 * 57.03164 * 19 9 8 41 41 H 1.09001 * 109.45777 * 182.44860 * 20 19 9 42 42 H 1.08998 * 109.47131 * 62.44127 * 20 19 9 43 43 H 1.09000 * 109.48145 * 178.85803 * 22 21 20 44 44 H 1.08997 * 109.48895 * 58.82545 * 22 21 20 45 45 H 1.09003 * 109.52172 * 297.70309 * 23 22 21 46 46 H 1.09000 * 109.57367 * 177.55047 * 23 22 21 47 47 H 1.07992 * 126.57900 * 359.95990 * 25 24 2 48 48 H 1.07999 * 126.57362 * 180.02562 * 26 25 24 49 49 H 1.08001 * 125.78749 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0109 1.0869 2.3634 7 7 1.9846 -0.3920 3.7002 8 6 1.5965 0.3643 4.8934 9 6 2.0400 -0.3954 6.1452 10 7 3.4766 -0.6718 6.0674 11 6 4.3712 0.3635 6.0147 12 1 4.0159 1.3812 5.9473 13 6 5.7347 0.1051 6.0480 14 7 6.5946 1.1003 5.9968 15 14 6.3490 -1.6552 6.1640 16 1 6.4941 -2.0357 7.5920 17 1 5.3758 -2.5636 5.5061 18 1 7.6657 -1.7656 5.4861 19 6 1.7475 0.4504 7.3883 20 6 2.1228 -0.3518 8.6394 21 8 1.3933 -1.5806 8.6535 22 6 1.6628 -2.4320 7.5379 23 6 1.2688 -1.7152 6.2438 24 6 2.0324 -0.7103 -1.2305 25 6 2.8090 -0.1718 -2.1878 26 6 3.0378 -1.1846 -3.1474 27 6 2.3878 -2.2815 -2.7189 28 8 1.7857 -1.9901 -1.5544 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1264 -0.7994 1.2056 33 1 1.6055 -1.7198 1.2950 34 1 2.4885 -1.2159 3.7907 35 1 0.5137 0.4888 4.9084 36 1 2.0746 1.3436 4.8741 37 1 3.7940 -1.5884 6.0533 38 1 7.5473 0.9196 6.0197 39 1 2.3352 1.3676 7.3514 40 1 0.6863 0.6976 7.4192 41 1 1.8766 0.2273 9.5294 42 1 3.1918 -0.5639 8.6278 43 1 1.0854 -3.3515 7.6345 44 1 2.7258 -2.6714 7.5116 45 1 0.1980 -1.5116 6.2517 46 1 1.5135 -2.3449 5.3884 47 1 3.1846 0.8403 -2.2181 48 1 3.6229 -1.0949 -4.0507 49 1 2.3592 -3.2361 -3.2233 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754740846.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:12 Heat of formation + Delta-G solvation = -82.668077 kcal Electronic energy + Delta-G solvation = -30161.440866 eV Core-core repulsion = 26089.516807 eV Total energy + Delta-G solvation = -4071.924058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.49317 -41.20998 -40.30768 -37.48456 -36.10107 -35.09961 -33.93222 -33.81859 -32.00712 -31.66647 -30.16074 -29.19644 -27.59460 -25.68337 -24.54062 -24.08910 -23.18589 -22.65389 -21.40420 -20.75822 -20.04868 -19.80535 -18.46207 -17.83738 -17.13754 -17.04082 -16.87056 -16.75199 -16.63010 -16.27707 -15.95353 -15.62598 -15.39940 -15.22680 -14.92190 -14.34091 -14.26407 -14.08910 -13.98792 -13.88263 -13.72350 -13.49714 -13.27524 -13.21163 -12.96451 -12.90022 -12.69349 -12.41784 -12.27635 -12.18432 -12.09286 -11.96891 -11.76587 -11.49026 -11.18632 -11.03013 -10.83358 -10.74575 -10.38703 -9.89430 -9.36961 -9.30610 -7.96442 -5.31557 0.82303 1.35914 1.41791 1.48484 1.70475 1.73123 2.08675 2.37710 2.50646 3.04110 3.34440 3.46123 3.62726 3.71790 3.81468 3.90624 4.00176 4.08937 4.11632 4.16277 4.19704 4.31943 4.41335 4.42278 4.57842 4.62889 4.68238 4.73363 4.76392 4.78865 4.86396 4.91078 4.93831 5.01120 5.05308 5.07780 5.14230 5.18132 5.20085 5.26181 5.28368 5.36580 5.61863 5.62208 5.84920 6.23813 6.25660 6.33762 6.66773 7.11927 7.33985 7.83554 8.04149 9.24932 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011831 B = 0.003269 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.160313 B = 8563.078839 C = 9691.814844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.011 3.989 3 H 0.093 0.907 4 C -0.130 4.130 5 C 0.510 3.490 6 O -0.580 6.580 7 N -0.701 5.701 8 C 0.128 3.872 9 C 0.192 3.808 10 N -0.734 5.734 11 C -0.204 4.204 12 H 0.054 0.946 13 C -0.058 4.058 14 N -0.985 5.985 15 Si 0.942 3.058 16 H -0.287 1.287 17 H -0.241 1.241 18 H -0.307 1.307 19 C -0.150 4.150 20 C 0.075 3.925 21 O -0.395 6.395 22 C 0.059 3.941 23 C -0.146 4.146 24 C -0.015 4.015 25 C -0.227 4.227 26 C -0.228 4.228 27 C -0.042 4.042 28 O -0.184 6.184 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.407 0.593 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.367 0.633 38 H 0.253 0.747 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.037 0.963 43 H 0.118 0.882 44 H 0.039 0.961 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.150 0.850 48 H 0.166 0.834 49 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.785 -11.389 -11.394 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.007 4.007 3 H 0.112 0.888 4 C -0.169 4.169 5 C 0.298 3.702 6 O -0.462 6.462 7 N -0.351 5.351 8 C 0.002 3.998 9 C 0.102 3.898 10 N -0.378 5.378 11 C -0.335 4.335 12 H 0.072 0.928 13 C -0.250 4.250 14 N -0.636 5.636 15 Si 0.771 3.229 16 H -0.214 1.214 17 H -0.165 1.165 18 H -0.235 1.235 19 C -0.190 4.190 20 C -0.002 4.002 21 O -0.314 6.314 22 C -0.017 4.017 23 C -0.184 4.184 24 C -0.065 4.065 25 C -0.246 4.246 26 C -0.247 4.247 27 C -0.109 4.109 28 O -0.081 6.081 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.136 0.864 34 H 0.243 0.757 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.202 0.798 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.055 0.945 43 H 0.136 0.864 44 H 0.057 0.943 45 H 0.111 0.889 46 H 0.107 0.893 47 H 0.167 0.833 48 H 0.184 0.816 49 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -13.458 -10.714 -11.127 20.487 hybrid contribution 1.946 -0.291 -0.242 1.982 sum -11.513 -11.005 -11.370 19.569 Atomic orbital electron populations 1.21871 0.92812 1.02465 1.02943 1.19397 0.97300 0.97430 0.86618 0.88844 1.21713 1.03655 1.00838 0.90718 1.20901 0.78683 0.85356 0.85290 1.90626 1.42318 1.26086 1.87127 1.45734 1.56402 1.27723 1.05223 1.21583 0.98403 0.94596 0.85254 1.19998 0.83313 0.94597 0.91880 1.42788 1.01274 1.04373 1.89414 1.18709 0.86847 0.88412 1.39534 0.92791 1.25358 0.96165 1.00254 1.03191 1.69883 1.01432 1.32136 1.60128 0.85616 0.77705 0.81920 0.77684 1.21353 1.16474 1.23463 1.22431 1.01404 0.99276 0.95903 1.22399 0.95135 0.84888 0.97797 1.87831 1.67403 1.30496 1.45654 1.22678 1.00251 0.93561 0.85231 1.22375 1.01186 0.95619 0.99210 1.22408 1.02087 0.82873 0.99112 1.21918 1.03954 1.02119 0.96591 1.22148 1.06110 0.93516 1.02960 1.24791 0.98047 1.02084 0.85998 1.83985 1.60306 1.27706 1.36085 0.91888 0.91280 0.92159 0.88322 0.86434 0.75744 0.91182 0.95290 0.79816 0.93788 0.92733 0.90115 0.88381 0.94454 0.86438 0.94260 0.88865 0.89270 0.83263 0.81648 0.74547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.92 71.98 0.64 -2.67 16 2 C 0.01 0.28 2.44 -11.54 -0.03 0.25 16 3 H 0.09 2.51 7.91 -2.38 -0.02 2.49 16 4 C -0.13 -3.11 5.16 29.85 0.15 -2.95 16 5 C 0.51 15.71 7.55 87.66 0.66 16.38 16 6 O -0.58 -21.56 13.96 -3.02 -0.04 -21.60 16 7 N -0.70 -21.26 5.13 -463.05 -2.38 -23.63 16 8 C 0.13 4.28 4.36 86.38 0.38 4.65 16 9 C 0.19 6.10 0.41 3.72 0.00 6.10 16 10 N -0.73 -28.52 3.42 -302.82 -1.04 -29.55 16 11 C -0.20 -10.34 9.16 84.04 0.77 -9.57 16 12 H 0.05 3.14 7.00 -2.91 -0.02 3.12 16 13 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 14 N -0.98 -60.86 13.97 21.65 0.30 -60.56 16 15 Si 0.94 42.18 27.79 68.60 1.91 44.08 16 16 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.24 -9.08 6.45 99.48 0.64 -8.44 16 18 H -0.31 -14.52 7.11 99.48 0.71 -13.81 16 19 C -0.15 -4.87 4.80 30.75 0.15 -4.72 16 20 C 0.07 2.37 6.68 72.08 0.48 2.85 16 21 O -0.39 -11.66 10.77 -148.98 -1.60 -13.27 16 22 C 0.06 1.47 6.67 72.01 0.48 1.95 16 23 C -0.15 -3.49 4.80 30.69 0.15 -3.34 16 24 C -0.01 -0.35 5.83 24.83 0.14 -0.20 16 25 C -0.23 -5.11 10.78 22.19 0.24 -4.87 16 26 C -0.23 -4.22 10.91 22.19 0.24 -3.98 16 27 C -0.04 -0.70 12.09 66.97 0.81 0.11 16 28 O -0.18 -4.00 10.65 -2.44 -0.03 -4.02 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.86 5.95 -2.39 -0.01 1.85 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.41 11.16 7.41 -92.71 -0.69 10.47 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.03 1.21 7.46 -2.39 -0.02 1.19 16 37 H 0.37 13.63 4.63 -92.70 -0.43 13.20 16 38 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.05 2.08 7.19 -2.39 -0.02 2.07 16 40 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.04 1.39 7.75 -2.39 -0.02 1.37 16 43 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.04 1.07 7.14 -2.39 -0.02 1.06 16 45 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.09 1.82 7.36 -2.39 -0.02 1.81 16 47 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 48 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 49 H 0.24 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -69.88 387.99 2.64 -67.23 By element: Atomic # 1 Polarization: 44.28 SS G_CDS: -0.22 Total: 44.07 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 5.74 Total: -2.75 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -3.11 Total: -113.74 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.67 Total: -38.89 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.91 Total: 44.08 kcal Total: -69.88 2.64 -67.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754740846.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.434 kcal (2) G-P(sol) polarization free energy of solvation -69.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds